BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0250.0002.p (281 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772596.1| hypothetical protein blr5956 [Bradyrhizobium ja... 442 e-122 ref|YP_001207161.1| putative uroporphyrinogen-III synthase [Brad... 422 e-116 ref|YP_001241569.1| putative uroporphyrinogen-III synthase [Brad... 422 e-116 ref|ZP_08630804.1| uroporphyrinogen-III methyltransferase/ uropo... 421 e-116 ref|YP_534009.1| uroporphyrinogen III synthase HEM4 [Rhodopseudo... 400 e-109 >ref|NP_772596.1| hypothetical protein blr5956 [Bradyrhizobium japonicum USDA 110] dbj|BAC51221.1| blr5956 [Bradyrhizobium japonicum USDA 110] Length = 279 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 213/276 (77%), Positives = 244/276 (88%) Query: 1 MAERLNGYRILILETREEAQFSRLLAEQGADVLQCPMFTIHDAPDPVPIEAWIRRAIERP 60 MA+RLNGYRILILETREEAQFS+LLAEQGADV+QCPMFTIHDAPDP P+EAWIRRAI+RP Sbjct: 1 MADRLNGYRILILETREEAQFSKLLAEQGADVVQCPMFTIHDAPDPAPVEAWIRRAIDRP 60 Query: 61 LDDLVLMTGEGLRRLMKVVRRIGVEREFVDSLAKARKFARGPKPGRALREIGLEPQMTTE 120 DDLVLMTGEGLRR+MK+ R G+++ V +LAK+RKF RGPKPG+ALREI LE Q TTE Sbjct: 61 FDDLVLMTGEGLRRIMKLARTRGLDQALVAALAKSRKFTRGPKPGKALREISLEAQQTTE 120 Query: 121 KPTSEGVAEMLSKLDLTGHRLGLQLYPDKDHASLIGAIKAQGAEVDTVLPYVYDAQAADA 180 KPT+EGV EML KLDL G RLGLQLYPDKDH++L GA+ AQGAEVDTVLPYVYD++AADA Sbjct: 121 KPTTEGVIEMLGKLDLKGRRLGLQLYPDKDHSTLTGALSAQGAEVDTVLPYVYDSKAADA 180 Query: 181 NIVTAIEEMAQGRMDAIALTNLGQVRRLIEVARARGCEDRLREGFERTPIASVGPAVSDE 240 NIV AI++MA+GR+D+IALTNLGQVRRLIE A+A G E +LR G ERT IASVGPAVS E Sbjct: 181 NIVAAIDDMAEGRIDSIALTNLGQVRRLIEAAKAHGSEAKLRAGLERTLIASVGPAVSGE 240 Query: 241 LKSQGLRTDIYPAEDAFFMRPLISAMAAALSKNPPR 276 L + GLRTDI PAEDA+FMRPLISAMAAAL++ P+ Sbjct: 241 LAAHGLRTDIAPAEDAYFMRPLISAMAAALAEKRPK 276 >ref|YP_001207161.1| putative uroporphyrinogen-III synthase [Bradyrhizobium sp. ORS 278] emb|CAL78944.1| Putative uroporphyrinogen-III synthase [Bradyrhizobium sp. ORS 278] Length = 274 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 207/270 (76%), Positives = 232/270 (85%) Query: 1 MAERLNGYRILILETREEAQFSRLLAEQGADVLQCPMFTIHDAPDPVPIEAWIRRAIERP 60 MA+RL+G RILILETREEAQFSRLLAEQGADVLQCPMFTI DAPDP PIEAWIRR +RP Sbjct: 1 MADRLSGNRILILETREEAQFSRLLAEQGADVLQCPMFTIQDAPDPAPIEAWIRRCTDRP 60 Query: 61 LDDLVLMTGEGLRRLMKVVRRIGVEREFVDSLAKARKFARGPKPGRALREIGLEPQMTTE 120 DDLVLMTGEGLRRLM VVRRIGVE EFV +L KARKF RGPKPGRALRE+GLE Q+TTE Sbjct: 61 FDDLVLMTGEGLRRLMTVVRRIGVETEFVAALGKARKFTRGPKPGRALRELGLESQVTTE 120 Query: 121 KPTSEGVAEMLSKLDLTGHRLGLQLYPDKDHASLIGAIKAQGAEVDTVLPYVYDAQAADA 180 KPTSEGVAE+L + DL GHRLGLQLYPDKDH++LIGAI+A GAEVD VLPYVYDA+AADA Sbjct: 121 KPTSEGVAELLGRYDLKGHRLGLQLYPDKDHSALIGAIEATGAEVDAVLPYVYDAKAADA 180 Query: 181 NIVTAIEEMAQGRMDAIALTNLGQVRRLIEVARARGCEDRLREGFERTPIASVGPAVSDE 240 NI+TAI+EM G++DAIALT+ GQ RRL +VA+A G EDRLR G RT IASVGP V++E Sbjct: 181 NILTAIDEMTAGKVDAIALTSSGQPRRLFDVAKAHGVEDRLRHGLARTQIASVGPVVTEE 240 Query: 241 LKSQGLRTDIYPAEDAFFMRPLISAMAAAL 270 L + GL I P +A+FM+PLISAMA AL Sbjct: 241 LAAHGLSPSITPVGEAYFMKPLISAMATAL 270 >ref|YP_001241569.1| putative uroporphyrinogen-III synthase [Bradyrhizobium sp. BTAi1] gb|ABQ37663.1| Putative uroporphyrinogen-III synthase [Bradyrhizobium sp. BTAi1] Length = 277 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 206/271 (76%), Positives = 235/271 (86%) Query: 1 MAERLNGYRILILETREEAQFSRLLAEQGADVLQCPMFTIHDAPDPVPIEAWIRRAIERP 60 MA+RL G RILILETREEAQFSRLLAEQGADVLQCPMFTI DAPDP P+EAWI R IERP Sbjct: 1 MADRLTGNRILILETREEAQFSRLLAEQGADVLQCPMFTIQDAPDPAPVEAWIHRCIERP 60 Query: 61 LDDLVLMTGEGLRRLMKVVRRIGVEREFVDSLAKARKFARGPKPGRALREIGLEPQMTTE 120 LDDLVLMTGEGLRRLM VVRRIGVE F+ +L KARKF RGPKPGRALRE+GLE Q+TTE Sbjct: 61 LDDLVLMTGEGLRRLMTVVRRIGVEPAFIAALGKARKFTRGPKPGRALRELGLESQVTTE 120 Query: 121 KPTSEGVAEMLSKLDLTGHRLGLQLYPDKDHASLIGAIKAQGAEVDTVLPYVYDAQAADA 180 KPTSEGVAE+L++ DL GHRLGLQLYPDKDH++LIGAI+A+GA+VD VLPYVYDA+AADA Sbjct: 121 KPTSEGVAELLARYDLKGHRLGLQLYPDKDHSALIGAIQAEGADVDPVLPYVYDAKAADA 180 Query: 181 NIVTAIEEMAQGRMDAIALTNLGQVRRLIEVARARGCEDRLREGFERTPIASVGPAVSDE 240 NI+TAI+EM G++DAIALT+ GQ RRL +VA+A G EDRLR+G RT IASVGP V++E Sbjct: 181 NILTAIDEMTAGKVDAIALTSSGQPRRLFDVAKAHGVEDRLRQGLARTQIASVGPVVTEE 240 Query: 241 LKSQGLRTDIYPAEDAFFMRPLISAMAAALS 271 L + GL I PA +A+FM+PLISAMA AL Sbjct: 241 LAAHGLAPSIVPAGEAYFMKPLISAMATALG 271 >ref|ZP_08630804.1| uroporphyrinogen-III methyltransferase/ uroporphyrinogen-III synthase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06521.1| uroporphyrinogen-III methyltransferase/ uroporphyrinogen-III synthase [Bradyrhizobiaceae bacterium SG-6C] Length = 280 Score = 421 bits (1081), Expect = e-116, Method: Compositional matrix adjust. Identities = 204/277 (73%), Positives = 234/277 (84%) Query: 1 MAERLNGYRILILETREEAQFSRLLAEQGADVLQCPMFTIHDAPDPVPIEAWIRRAIERP 60 M RL GYRILILETREEAQFSRLL EQGA VLQCPMFTI DAPDP PIEAWI I +P Sbjct: 1 MPGRLEGYRILILETREEAQFSRLLQEQGAHVLQCPMFTIRDAPDPAPIEAWIGLFIAKP 60 Query: 61 LDDLVLMTGEGLRRLMKVVRRIGVEREFVDSLAKARKFARGPKPGRALREIGLEPQMTTE 120 DDLVLMTGEGLRR+MKV +RIG +++ + ++AKA+++ARGPKP RALREIGLE + TE Sbjct: 61 FDDLVLMTGEGLRRIMKVAQRIGADQDLIAAIAKAKRYARGPKPVRALREIGLEADVQTE 120 Query: 121 KPTSEGVAEMLSKLDLTGHRLGLQLYPDKDHASLIGAIKAQGAEVDTVLPYVYDAQAADA 180 PTSEGVA ML++ DLTGHR+GLQLYPDKDHA LIGAI + GA V+TVLPY+YD +AAD Sbjct: 121 TPTSEGVAAMLAQQDLTGHRVGLQLYPDKDHAKLIGAITSLGAHVETVLPYIYDGEAADT 180 Query: 181 NIVTAIEEMAQGRMDAIALTNLGQVRRLIEVARARGCEDRLREGFERTPIASVGPAVSDE 240 NIV AI+EMAQ R+DAIALT+ GQVRRL++VARA GCEDRLR G +TPIASVGP VSDE Sbjct: 181 NIVAAIDEMAQRRVDAIALTSSGQVRRLVDVARAHGCEDRLRAGLAQTPIASVGPVVSDE 240 Query: 241 LKSQGLRTDIYPAEDAFFMRPLISAMAAALSKNPPRA 277 LK+ GL TDIYPA D+FFM+PLISAMA L+K PPRA Sbjct: 241 LKAYGLHTDIYPANDSFFMKPLISAMALELNKTPPRA 277 >ref|YP_534009.1| uroporphyrinogen III synthase HEM4 [Rhodopseudomonas palustris BisB18] gb|ABD89690.1| Uroporphyrinogen III synthase HEM4 [Rhodopseudomonas palustris BisB18] Length = 280 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/280 (69%), Positives = 225/280 (80%) Query: 1 MAERLNGYRILILETREEAQFSRLLAEQGADVLQCPMFTIHDAPDPVPIEAWIRRAIERP 60 M ERL+GYRILILETREEAQF+RLL EQGA VLQCPMF IHDAPDP P+EAWIRR I +P Sbjct: 1 MVERLDGYRILILETREEAQFARLLTEQGAAVLQCPMFAIHDAPDPAPVEAWIRRCIAQP 60 Query: 61 LDDLVLMTGEGLRRLMKVVRRIGVEREFVDSLAKARKFARGPKPGRALREIGLEPQMTTE 120 DDLVL TGEGLRRL+K RRI + + ++ ++R FARGPKPGRALREIGLE + TE Sbjct: 61 FDDLVLTTGEGLRRLVKAARRIELGEPLIAAIGQSRSFARGPKPGRALREIGLEASIVTE 120 Query: 121 KPTSEGVAEMLSKLDLTGHRLGLQLYPDKDHASLIGAIKAQGAEVDTVLPYVYDAQAADA 180 PTSEG+A L +DL G RLGLQLYPDKDH+ LI AI A GA VD VLPYVYDA+AA++ Sbjct: 121 VPTSEGIAATLKAVDLRGRRLGLQLYPDKDHSVLIAAITAGGASVDPVLPYVYDARAAES 180 Query: 181 NIVTAIEEMAQGRMDAIALTNLGQVRRLIEVARARGCEDRLREGFERTPIASVGPAVSDE 240 N++ AI+ MA G +DA+ALT+ GQ+RRLI+VARA CE RLRE TPIASVGP VS+E Sbjct: 181 NVLAAIDAMAAGSIDALALTSSGQIRRLIDVARAHHCEPRLREALAATPIASVGPVVSEE 240 Query: 241 LKSQGLRTDIYPAEDAFFMRPLISAMAAALSKNPPRATAR 280 LKS GLRTDIYPA DAFFM+PLISAMA AL+ PRA A+ Sbjct: 241 LKSYGLRTDIYPANDAFFMKPLISAMATALNARKPRAAAQ 280