BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0249.0044.p (515 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08629333.1| dipeptide-binding ABC transporter, periplasmi... 635 e-180 ref|NP_946796.1| peptide ABC transporter [Rhodopseudomonas palus... 629 e-178 ref|YP_001990636.1| family 5 extracellular solute-binding protei... 628 e-178 ref|YP_004110363.1| family 5 extracellular solute-binding protei... 619 e-175 ref|YP_998166.1| extracellular solute-binding protein [Vermineph... 612 e-173 >ref|ZP_08629333.1| dipeptide-binding ABC transporter, periplasmic substrate-binding component [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07826.1| dipeptide-binding ABC transporter, periplasmic substrate-binding component [Bradyrhizobiaceae bacterium SG-6C] Length = 511 Score = 635 bits (1639), Expect = e-180, Method: Compositional matrix adjust. Identities = 305/482 (63%), Positives = 377/482 (78%), Gaps = 3/482 (0%) Query: 33 KKGGTLRISAPANPSSLDPATGGAGSDHAFLFTMYDTLTEWEFDTLKPKPGLAESWKFTD 92 KKGG L+++APANPSSLDPATGGAGSDH+ L+TMYDTL EW++DTLKPKPGLA+ WK+ D Sbjct: 33 KKGGILKVAAPANPSSLDPATGGAGSDHSILWTMYDTLVEWDYDTLKPKPGLAK-WKYPD 91 Query: 93 PTTLVLNIRAGITFHDGTPLDAEAVRFNLERNRSDAKSNIKADLLSVAAVEVTGPQQVTL 152 P TLV +I++GI FHDGTPLDAEAV+FN++RNR D +SN+KADL SV + EVTGP QVTL Sbjct: 92 PKTLVFDIQSGIKFHDGTPLDAEAVKFNIDRNRQDQRSNVKADLTSVESAEVTGPLQVTL 151 Query: 153 KLKTPDTALPGILSDRAGMMVSPTALKAAEGGVVTRKPVGAGAYSFVSWADGEKIVVKRN 212 KLK PD+ALP I SDRAGMMVSPT +KA G RKPVGAG + FV WAD E IVV RN Sbjct: 152 KLKNPDSALPAIFSDRAGMMVSPTNIKAL-GNDTDRKPVGAGPWKFVRWADNEAIVVTRN 210 Query: 213 EKYWKPERPLPDAIEISIIPELTTGARSVTAGQNDLIYQLPPRQKVIIERASSVKVVHGP 272 + YW+P RP D IE +IIPEL T RSV AGQND+ + LP R K +I+RA ++ V P Sbjct: 211 DSYWRPGRPYLDGIEFNIIPELATALRSVVAGQNDMSFALPARLKPVIDRAKNLTTVTSP 270 Query: 273 TLYVLQIFLNWAKPPFDNLKVRQALNFAIDRESFVKAALAGLAEPAYMNLPKAHWAYDAE 332 TLY +Q+++N A+ P DN+KVRQA+NFA+DR++FVKA + GL EPA M LP HWAYD Sbjct: 271 TLYCVQVYINTARAPLDNVKVRQAINFALDRDAFVKATMNGLGEPARMTLPSTHWAYDKS 330 Query: 333 VAKLYPYDPDRARKLLAEAGFKEGTPIELGGYPDQDSVQRQEILIEQLRKAGIGVRFVNA 392 +A LYP+DP++ARKLLAEAGFK+G + +GGY DQDSV+R E++ +QL KAGI ++F Sbjct: 331 IAGLYPHDPEKARKLLAEAGFKDGLELTIGGYMDQDSVRRGEVIQDQLGKAGIRLKFTRG 390 Query: 393 PIAEASAAFFGAEKKGAGLLSAWTGRPDPSLTYSLMFTKDAYYNAGRAPVPGELEAAIKE 452 IAE SA FFG EKK L+SAWTGRPDPS+TY+L F K AYYNAGR P EL A I+E Sbjct: 391 TIAEISAQFFGTEKKFDLLVSAWTGRPDPSMTYALGFDKGAYYNAGRLAAP-ELSALIQE 449 Query: 453 SRASEDIEVRRKAFSTVQRLVMENAFVVPLAFQFELVAMNKKVQGYRPNLLGKPKYDDVW 512 SR SED+ R F+ +QR MENA PLAFQFE+ A+++KV+G++PNLLGKPK++++ Sbjct: 450 SRESEDLAKRAAVFAKIQRFTMENALSAPLAFQFEIDALSEKVKGFKPNLLGKPKFENIS 509 Query: 513 LG 514 LG Sbjct: 510 LG 511 >ref|NP_946796.1| peptide ABC transporter [Rhodopseudomonas palustris CGA009] emb|CAE26889.1| possible dipeptide ABC transporter (dipeptide-binding protein) [Rhodopseudomonas palustris CGA009] Length = 517 Score = 629 bits (1621), Expect = e-178, Method: Compositional matrix adjust. Identities = 311/510 (60%), Positives = 386/510 (75%), Gaps = 8/510 (1%) Query: 6 RREVMALISGALASTTLG--GRAFAEGPPKKGGTLRISAPANPSSLDPATGGAGSDHAFL 63 RREV+AL+ GA A+ LG +A A K GG L+++APANPSSLDPATGGAGSDH+ L Sbjct: 13 RREVLALLGGAAATGVLGLPRQALAA---KTGGILKVAAPANPSSLDPATGGAGSDHSIL 69 Query: 64 FTMYDTLTEWEFDTLKPKPGLAESWKFTDPTTLVLNIRAGITFHDGTPLDAEAVRFNLER 123 +T+YDTL EW++DTLKPKPGLA+ W + DP T+VL+I GI FHDGT LDAEAV+FNL+R Sbjct: 70 WTIYDTLVEWDYDTLKPKPGLAK-WSYPDPNTMVLDISEGIKFHDGTSLDAEAVKFNLDR 128 Query: 124 NRSDAKSNIKADLLSVAAVEVTGPQQVTLKLKTPDTALPGILSDRAGMMVSPTALKAAEG 183 NRSD +SN+K DL SV +VEVTGP QVTLKLK PDTALP ILSDRAGMMVSPT +KA G Sbjct: 129 NRSDQRSNVKPDLSSVDSVEVTGPLQVTLKLKNPDTALPAILSDRAGMMVSPTNIKAL-G 187 Query: 184 GVVTRKPVGAGAYSFVSWADGEKIVVKRNEKYWKPERPLPDAIEISIIPELTTGARSVTA 243 RKPVGAG + FV W D E +VV RNE YW+ RP D IE +IIPE T RSV A Sbjct: 188 NDTDRKPVGAGPWKFVRWNDNEIVVVARNENYWRKGRPFLDGIEFNIIPENATALRSVVA 247 Query: 244 GQNDLIYQLPPRQKVIIERASSVKVVHGPTLYVLQIFLNWAKPPFDNLKVRQALNFAIDR 303 GQND+ +QLP R K +IERA +K+V PTLY +Q++ N+A+ P DN+KVRQA+NFA+DR Sbjct: 248 GQNDMAFQLPARLKPVIERAKDLKLVSSPTLYCIQVYFNYARAPLDNIKVRQAINFALDR 307 Query: 304 ESFVKAALAGLAEPAYMNLPKAHWAYDAEVAKLYPYDPDRARKLLAEAGFKEGTPIELGG 363 ++FVKAAL+GL EPA M LP +HWAY +VA YPYDP++A+KLLAEAG+K+G + +GG Sbjct: 308 DTFVKAALSGLGEPARMTLPSSHWAYAKDVAGTYPYDPEKAKKLLAEAGYKDGLEMTIGG 367 Query: 364 YPDQDSVQRQEILIEQLRKAGIGVRFVNAPIAEASAAFFGAEKKGAGLLSAWTGRPDPSL 423 Y DQDSV+R E++ +QL K GI ++F IAE SA FF EKK L+SAWTGRPDPS+ Sbjct: 368 YTDQDSVRRGEVIQDQLGKVGIKLKFTRGTIAEISAQFFAQEKKFDMLVSAWTGRPDPSM 427 Query: 424 TYSLMFTKDAYYNAGRAPVPGELEAAIKESRASEDIEVRRKAFSTVQRLVMENAFVVPLA 483 TY L F K AYYNAGR P EL I+ESRAS+D+ R F+ +QR +E A PLA Sbjct: 428 TYGLGFDKGAYYNAGRTADP-ELSKLIQESRASQDLNERAAVFAKIQRFTVEQALSAPLA 486 Query: 484 FQFELVAMNKKVQGYRPNLLGKPKYDDVWL 513 FQ+EL A++ KV+ ++PNLLGKPK++++ L Sbjct: 487 FQYELDALSAKVKDFQPNLLGKPKFENISL 516 >ref|YP_001990636.1| family 5 extracellular solute-binding protein [Rhodopseudomonas palustris TIE-1] gb|ACF00161.1| extracellular solute-binding protein family 5 [Rhodopseudomonas palustris TIE-1] Length = 517 Score = 628 bits (1620), Expect = e-178, Method: Compositional matrix adjust. Identities = 311/510 (60%), Positives = 386/510 (75%), Gaps = 8/510 (1%) Query: 6 RREVMALISGALASTTLG--GRAFAEGPPKKGGTLRISAPANPSSLDPATGGAGSDHAFL 63 RREV+AL+ GA A+ LG +A A K GG L+++APANPSSLDPATGGAGSDH+ L Sbjct: 13 RREVLALLGGAAATGVLGLPRQALAA---KTGGILKVAAPANPSSLDPATGGAGSDHSIL 69 Query: 64 FTMYDTLTEWEFDTLKPKPGLAESWKFTDPTTLVLNIRAGITFHDGTPLDAEAVRFNLER 123 +T+YDTL EW++DTLKPKPGLA+ W + DP T+VL+I GI FHDGT LDAEAV+FNL+R Sbjct: 70 WTIYDTLVEWDYDTLKPKPGLAK-WSYPDPNTMVLDISEGIKFHDGTSLDAEAVKFNLDR 128 Query: 124 NRSDAKSNIKADLLSVAAVEVTGPQQVTLKLKTPDTALPGILSDRAGMMVSPTALKAAEG 183 NRSD +SN+K DL SV +VEVTGP QVTLKLK PDTALP ILSDRAGMMVSPT +KA G Sbjct: 129 NRSDQRSNVKPDLSSVDSVEVTGPLQVTLKLKNPDTALPAILSDRAGMMVSPTNIKAL-G 187 Query: 184 GVVTRKPVGAGAYSFVSWADGEKIVVKRNEKYWKPERPLPDAIEISIIPELTTGARSVTA 243 RKPVGAG + FV W D E +VV RNE YW+ RP D IE +IIPE T RSV A Sbjct: 188 NDTDRKPVGAGPWKFVRWNDNEIVVVARNENYWRKGRPFLDGIEFNIIPENATALRSVVA 247 Query: 244 GQNDLIYQLPPRQKVIIERASSVKVVHGPTLYVLQIFLNWAKPPFDNLKVRQALNFAIDR 303 GQND+ +QLP R K +IERA +K+V PTLY +Q++ N+A+ P DN+KVRQA+NFA+DR Sbjct: 248 GQNDMAFQLPARLKPVIERAKDLKLVSSPTLYCIQVYFNYARAPLDNVKVRQAINFALDR 307 Query: 304 ESFVKAALAGLAEPAYMNLPKAHWAYDAEVAKLYPYDPDRARKLLAEAGFKEGTPIELGG 363 ++FVKAAL+GL EPA M LP +HWAY +VA YPYDP++A+KLLAEAG+K+G + +GG Sbjct: 308 DTFVKAALSGLGEPARMTLPSSHWAYAKDVAGTYPYDPEKAKKLLAEAGYKDGLEMTIGG 367 Query: 364 YPDQDSVQRQEILIEQLRKAGIGVRFVNAPIAEASAAFFGAEKKGAGLLSAWTGRPDPSL 423 Y DQDSV+R E++ +QL K GI ++F IAE SA FF EKK L+SAWTGRPDPS+ Sbjct: 368 YTDQDSVRRGEVIQDQLGKVGIKLKFTRGTIAEISAQFFAQEKKFDMLVSAWTGRPDPSM 427 Query: 424 TYSLMFTKDAYYNAGRAPVPGELEAAIKESRASEDIEVRRKAFSTVQRLVMENAFVVPLA 483 TY L F K AYYNAGR P EL I+ESRAS+D+ R F+ +QR +E A PLA Sbjct: 428 TYGLGFDKGAYYNAGRTADP-ELSKLIQESRASQDLNERAAVFAKIQRFTVEQALSAPLA 486 Query: 484 FQFELVAMNKKVQGYRPNLLGKPKYDDVWL 513 FQ+EL A++ KV+ ++PNLLGKPK++++ L Sbjct: 487 FQYELDALSAKVKDFQPNLLGKPKFENISL 516 >ref|YP_004110363.1| family 5 extracellular solute-binding protein [Rhodopseudomonas palustris DX-1] gb|ADU45630.1| extracellular solute-binding protein family 5 [Rhodopseudomonas palustris DX-1] Length = 517 Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust. Identities = 299/481 (62%), Positives = 372/481 (77%), Gaps = 3/481 (0%) Query: 33 KKGGTLRISAPANPSSLDPATGGAGSDHAFLFTMYDTLTEWEFDTLKPKPGLAESWKFTD 92 K GG L+++APANPSSLDPATGGAGSDH+ L+TMYDTL EW++DTLKPKPG+A+ W + D Sbjct: 39 KAGGILKVAAPANPSSLDPATGGAGSDHSILWTMYDTLVEWDYDTLKPKPGMAK-WSYPD 97 Query: 93 PTTLVLNIRAGITFHDGTPLDAEAVRFNLERNRSDAKSNIKADLLSVAAVEVTGPQQVTL 152 P T+VL+I GI FHDGTPLDAEAV+FNL+RNRSD +SN+K+DLL++ +V+VTGP QVTL Sbjct: 98 PKTMVLDISEGIKFHDGTPLDAEAVKFNLDRNRSDQRSNVKSDLLTIESVDVTGPLQVTL 157 Query: 153 KLKTPDTALPGILSDRAGMMVSPTALKAAEGGVVTRKPVGAGAYSFVSWADGEKIVVKRN 212 KLK PDT+LP ILSDRAGMMVSPT +KA G RKPVGAG + FV W D E IVV RN Sbjct: 158 KLKNPDTSLPAILSDRAGMMVSPTNIKAL-GNETDRKPVGAGPWKFVRWNDNEIIVVARN 216 Query: 213 EKYWKPERPLPDAIEISIIPELTTGARSVTAGQNDLIYQLPPRQKVIIERASSVKVVHGP 272 E YW+ RP D IE +IIPE T RSV AGQND+ +QLP R K +IERA +K+V P Sbjct: 217 ESYWRKGRPFLDGIEFNIIPENATALRSVVAGQNDMAFQLPARLKPVIERAKDLKMVSSP 276 Query: 273 TLYVLQIFLNWAKPPFDNLKVRQALNFAIDRESFVKAALAGLAEPAYMNLPKAHWAYDAE 332 TLY +Q++ N+A+ P DN+KVRQA+NFA+DRE+FVKAAL+GL EPA M LP HWAY + Sbjct: 277 TLYCIQVYFNYARAPLDNVKVRQAINFALDREAFVKAALSGLGEPARMTLPSTHWAYAKD 336 Query: 333 VAKLYPYDPDRARKLLAEAGFKEGTPIELGGYPDQDSVQRQEILIEQLRKAGIGVRFVNA 392 VA YP+DP++A+KLLAEAG+K+G + +GGY DQDSV+R EI+ +QL K GI ++F Sbjct: 337 VAGTYPHDPEKAKKLLAEAGYKDGLEMTIGGYTDQDSVRRGEIIQDQLGKVGIRLKFTRG 396 Query: 393 PIAEASAAFFGAEKKGAGLLSAWTGRPDPSLTYSLMFTKDAYYNAGRAPVPGELEAAIKE 452 IAE SA FF EKK L+SAWTGRPDPS+TY+L F K AYYNAGR P EL I+E Sbjct: 397 TIAEISAQFFAQEKKFDMLVSAWTGRPDPSMTYALGFDKGAYYNAGRTADP-ELSKLIQE 455 Query: 453 SRASEDIEVRRKAFSTVQRLVMENAFVVPLAFQFELVAMNKKVQGYRPNLLGKPKYDDVW 512 SRAS+D+ R F+ +QR+ + A PLAFQFEL A++ KV+ ++PNLLGKPK+++V Sbjct: 456 SRASQDLAERAAVFAKIQRITVGQALSAPLAFQFELDALSAKVKDFQPNLLGKPKFENVS 515 Query: 513 L 513 L Sbjct: 516 L 516 >ref|YP_998166.1| extracellular solute-binding protein [Verminephrobacter eiseniae EF01-2] gb|ABM59148.1| extracellular solute-binding protein, family 5 [Verminephrobacter eiseniae EF01-2] Length = 526 Score = 612 bits (1577), Expect = e-173, Method: Compositional matrix adjust. Identities = 293/487 (60%), Positives = 369/487 (75%), Gaps = 2/487 (0%) Query: 27 FAEGPPKKGGTLRISAPANPSSLDPATGGAGSDHAFLFTMYDTLTEWEFDTLKPKPGLAE 86 FA+ PKKGG LRI++PANPSSLDPA GGAGSDHA L+TMYDTL EW++ TLKPKPG+AE Sbjct: 40 FAQTAPKKGGVLRIASPANPSSLDPAVGGAGSDHAILWTMYDTLVEWDYATLKPKPGMAE 99 Query: 87 SWKFTDPTTLVLNIRAGITFHDGTPLDAEAVRFNLERNRSDAKSNIKADLLSVAAVEVTG 146 W F DP T++L I+ GI+FHDGTP DAEAVR+N+ERNR DA SN+KADL S+ A V Sbjct: 100 -WIFPDPKTMLLRIKPGISFHDGTPCDAEAVRWNIERNRGDAASNLKADLSSIEASAVVS 158 Query: 147 PQQVTLKLKTPDTALPGILSDRAGMMVSPTALKAAEGGVVTRKPVGAGAYSFVSWADGEK 206 P QV L L PD ALP + SDRAGMMVSPTA KAA G R PVGAG + FVSWAD +K Sbjct: 159 PTQVKLMLDQPDAALPAVFSDRAGMMVSPTAQKAA-GKAFGRNPVGAGPWRFVSWADNQK 217 Query: 207 IVVKRNEKYWKPERPLPDAIEISIIPELTTGARSVTAGQNDLIYQLPPRQKVIIERASSV 266 ++V R+ +YW+ P D IE SIIPEL TG RSV + QNDL YQL R + II R ++ Sbjct: 218 VIVTRHAQYWRTGLPYLDGIEFSIIPELATGLRSVVSRQNDLAYQLSARYRPIITREKAL 277 Query: 267 KVVHGPTLYVLQIFLNWAKPPFDNLKVRQALNFAIDRESFVKAALAGLAEPAYMNLPKAH 326 ++V GPTLY +Q+++N+A+ P DN K+RQA+NFA++RE+FVKA + G+ EPA+MNLP H Sbjct: 278 RLVTGPTLYCIQLYMNYARAPLDNPKLRQAINFALNREAFVKATMDGVGEPAHMNLPSTH 337 Query: 327 WAYDAEVAKLYPYDPDRARKLLAEAGFKEGTPIELGGYPDQDSVQRQEILIEQLRKAGIG 386 WAYD VA LYP+D +AR+L+A+AG G + +GGY DQD+V+R EI+++QL K GI Sbjct: 338 WAYDKSVAGLYPHDVAKARQLMADAGLAAGIDLTIGGYTDQDAVRRGEIVMDQLGKIGIR 397 Query: 387 VRFVNAPIAEASAAFFGAEKKGAGLLSAWTGRPDPSLTYSLMFTKDAYYNAGRAPVPGEL 446 ++F N I E S FFG EKK LLSAWTGRPDPS++YSLM+ K AYYNAGR+ EL Sbjct: 398 LKFTNGTIPEISGQFFGTEKKFDMLLSAWTGRPDPSMSYSLMYAKGAYYNAGRSEFSPEL 457 Query: 447 EAAIKESRASEDIEVRRKAFSTVQRLVMENAFVVPLAFQFELVAMNKKVQGYRPNLLGKP 506 A ++ESRA EDI+ R+ F+ +QR+VMENA V PLAFQFE+ A++ VQG+ PNLLGKP Sbjct: 458 SALLQESRAREDIQWRKSVFAKIQRMVMENALVAPLAFQFEIDALSNAVQGFVPNLLGKP 517 Query: 507 KYDDVWL 513 K++++ L Sbjct: 518 KFNNLSL 524