BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0249.0043.p (318 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_946797.1| putative oligopeptide ABC transporter permease ... 417 e-114 ref|YP_001990637.1| ABC transporter inner membrane protein [Rhod... 416 e-114 ref|YP_483853.1| binding-protein dependent transport system inne... 409 e-112 ref|YP_998167.1| binding-protein-dependent transport systems inn... 386 e-105 ref|YP_004110362.1| binding-protein-dependent transporter inner ... 372 e-101 >ref|NP_946797.1| putative oligopeptide ABC transporter permease [Rhodopseudomonas palustris CGA009] emb|CAE26890.1| putative oligopeptide ABC transporter (permease) [Rhodopseudomonas palustris CGA009] Length = 322 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 202/310 (65%), Positives = 256/310 (82%) Query: 7 VKVVGSRLVQALPVILLATFMVFALLKLVPGDIAVTLAGDNATDARITEIRKIYGLDRPF 66 ++++G RL+ A+PV++L+TF+VF LLKLVPGD+AVTLAGDNA++ RI EIR++YGL++PF Sbjct: 11 LRIIGRRLLHAVPVVVLSTFIVFGLLKLVPGDVAVTLAGDNASEQRIAEIRELYGLNQPF 70 Query: 67 LVQYGAWLGNVAQGDLSQSLLTGEKVADSIGRAFPNTLLIVVIALALALVTGIPMGVIAA 126 LVQYGAWL QGDLS SL++ E V SI R P+TLLIV +AL ALV G+P+G+ AA Sbjct: 71 LVQYGAWLWKAVQGDLSTSLVSSEAVLTSIERCLPHTLLIVALALFTALVIGVPLGIAAA 130 Query: 127 IKPNGWVDKLISMLASLGVAVPGFWLAMILVAEFSLKLNWLPATGAKSFSASPVDAIRHA 186 KP W+D ++ +ASLGVAVP FWL M+LVA FSL+LNWLPATGA S P A+ HA Sbjct: 131 AKPGSWIDGIVMAIASLGVAVPNFWLGMLLVAFFSLQLNWLPATGAASLMKDPAAALSHA 190 Query: 187 LLPGIAIAAYGMAEVARQLRGALLEVLSSQYVRTLHAKGLSMSRILWQHGLKNVGVNLLT 246 +LP +A+A+ G+AEVARQLR +L+E+LSSQ VRTLHAKGL S ILW+HGLKNV VNLLT Sbjct: 191 ILPALALASGGIAEVARQLRSSLVEILSSQQVRTLHAKGLPPSSILWRHGLKNVSVNLLT 250 Query: 247 IVSLLVNRMLAATVVIEAVFAIPGLGSLIVRGAIQRDFPIVQGVVFTMVVVVIAVNLVTD 306 ++SLL NRMLAATVV+EAVFAIPG+G LIV A+ RDFP+VQGVVFTMV++V+A+NL+TD Sbjct: 251 VISLLANRMLAATVVVEAVFAIPGMGGLIVNAAMHRDFPVVQGVVFTMVLIVVALNLLTD 310 Query: 307 LLCAAVDPRI 316 +L + +DPRI Sbjct: 311 ILYSVLDPRI 320 >ref|YP_001990637.1| ABC transporter inner membrane protein [Rhodopseudomonas palustris TIE-1] gb|ACF00162.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris TIE-1] Length = 318 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 201/310 (64%), Positives = 255/310 (82%) Query: 7 VKVVGSRLVQALPVILLATFMVFALLKLVPGDIAVTLAGDNATDARITEIRKIYGLDRPF 66 ++++G RL+ A+PV++L+TF+VF LLKLVPGD+AVTLAGDNA++ RI EIR++YGL++PF Sbjct: 7 LRIIGRRLLHAVPVVVLSTFIVFGLLKLVPGDVAVTLAGDNASEQRIAEIRELYGLNQPF 66 Query: 67 LVQYGAWLGNVAQGDLSQSLLTGEKVADSIGRAFPNTLLIVVIALALALVTGIPMGVIAA 126 LVQYGAWL QGDLS SL++ E V SI R P+TLLIV +AL ALV G+P+G+ AA Sbjct: 67 LVQYGAWLWKAVQGDLSTSLVSSEAVLTSIERCLPHTLLIVALALLTALVIGVPLGIAAA 126 Query: 127 IKPNGWVDKLISMLASLGVAVPGFWLAMILVAEFSLKLNWLPATGAKSFSASPVDAIRHA 186 KP W+D ++ +ASLGVAVP FWL M+LVA FSL+LNWLPATGA S P A+ HA Sbjct: 127 AKPGSWIDGIVMAIASLGVAVPNFWLGMLLVAFFSLQLNWLPATGAASLMKDPAAALSHA 186 Query: 187 LLPGIAIAAYGMAEVARQLRGALLEVLSSQYVRTLHAKGLSMSRILWQHGLKNVGVNLLT 246 +LP +A+A+ G+AEVARQLR +L+E+LSSQ VRTLHAKGL S ILW+HGLKNV VNLLT Sbjct: 187 ILPALALASGGIAEVARQLRSSLVEILSSQQVRTLHAKGLPPSSILWRHGLKNVAVNLLT 246 Query: 247 IVSLLVNRMLAATVVIEAVFAIPGLGSLIVRGAIQRDFPIVQGVVFTMVVVVIAVNLVTD 306 ++SLL NRMLAATVV+EAVFAIPG+G LIV A+ RDFP+VQGVVFTMV++V+ +NL+TD Sbjct: 247 VISLLANRMLAATVVVEAVFAIPGMGGLIVNAAMHRDFPVVQGVVFTMVLIVVTLNLLTD 306 Query: 307 LLCAAVDPRI 316 +L + +DPRI Sbjct: 307 ILYSVLDPRI 316 >ref|YP_483853.1| binding-protein dependent transport system inner membrane protein [Rhodopseudomonas palustris HaA2] gb|ABD04942.1| Binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris HaA2] Length = 318 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 200/316 (63%), Positives = 260/316 (82%) Query: 1 MARRSPVKVVGSRLVQALPVILLATFMVFALLKLVPGDIAVTLAGDNATDARITEIRKIY 60 M + + +VG R++QA+PV++L+TF+VF LLKLVPGD+AVTLAGDNA+D RI EIR++Y Sbjct: 1 MLNAARLHIVGRRVLQAIPVVVLSTFIVFGLLKLVPGDVAVTLAGDNASDQRIAEIRELY 60 Query: 61 GLDRPFLVQYGAWLGNVAQGDLSQSLLTGEKVADSIGRAFPNTLLIVVIALALALVTGIP 120 GL++PFL+QYG+WL QGDLS SL++ E V SI R P+TLLIV +AL AL+ G+P Sbjct: 61 GLNQPFLLQYGSWLAKAVQGDLSNSLVSNEAVLTSIQRCLPHTLLIVTLALLTALLIGVP 120 Query: 121 MGVIAAIKPNGWVDKLISMLASLGVAVPGFWLAMILVAEFSLKLNWLPATGAKSFSASPV 180 +G+ AA KP W+D ++ +ASLGVAVP FWL M+LVA FSL+LNWLPATGA +F+ P Sbjct: 121 LGIAAATKPGSWIDSVVMAIASLGVAVPNFWLGMLLVAFFSLQLNWLPATGAVAFTKDPW 180 Query: 181 DAIRHALLPGIAIAAYGMAEVARQLRGALLEVLSSQYVRTLHAKGLSMSRILWQHGLKNV 240 ++ HA+LP +A+A+ G+AEVARQLR +L+E+LSSQ VRTLHAKGL S ILW+HGLKNV Sbjct: 181 ASLSHAILPAVALASGGIAEVARQLRSSLVEILSSQQVRTLHAKGLPPSSILWRHGLKNV 240 Query: 241 GVNLLTIVSLLVNRMLAATVVIEAVFAIPGLGSLIVRGAIQRDFPIVQGVVFTMVVVVIA 300 VNLLT++SLL NRMLAATVV+EAVFAIPG+G LIV A+ RDFP+VQGVVFTMV++V++ Sbjct: 241 SVNLLTVISLLANRMLAATVVVEAVFAIPGMGGLIVNAAMHRDFPVVQGVVFTMVLIVVS 300 Query: 301 VNLVTDLLCAAVDPRI 316 +NL+TD+L + +DPRI Sbjct: 301 LNLLTDILYSVLDPRI 316 >ref|YP_998167.1| binding-protein-dependent transport systems inner membrane component [Verminephrobacter eiseniae EF01-2] gb|ABM59149.1| binding-protein-dependent transport systems inner membrane component [Verminephrobacter eiseniae EF01-2] Length = 332 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 209/310 (67%), Positives = 254/310 (81%) Query: 8 KVVGSRLVQALPVILLATFMVFALLKLVPGDIAVTLAGDNATDARITEIRKIYGLDRPFL 67 ++ RL+QALPV+L ATF+VF LLKLVPGDIAV LAGDNA+DAR+ EIR +YGLD+PFL Sbjct: 23 HLLARRLMQALPVLLFATFVVFGLLKLVPGDIAVALAGDNASDARLAEIRALYGLDQPFL 82 Query: 68 VQYGAWLGNVAQGDLSQSLLTGEKVADSIGRAFPNTLLIVVIALALALVTGIPMGVIAAI 127 VQYG WL QGDLSQSL++GE V SI R P T LIV +AL +AL GIP+G+ AA Sbjct: 83 VQYGHWLWQALQGDLSQSLMSGEAVTVSIARCLPKTALIVGLALLIALAVGIPLGMWAAA 142 Query: 128 KPNGWVDKLISMLASLGVAVPGFWLAMILVAEFSLKLNWLPATGAKSFSASPVDAIRHAL 187 K WVD + LASLGVAVP FWLAM+L+A F+L+LNWLPATG+ S A PV+A+RHAL Sbjct: 143 KCGTWVDGWVMTLASLGVAVPNFWLAMVLIAWFALQLNWLPATGSASLGAEPVEALRHAL 202 Query: 188 LPGIAIAAYGMAEVARQLRGALLEVLSSQYVRTLHAKGLSMSRILWQHGLKNVGVNLLTI 247 LP +A+AA G+AEV+RQLR +L+++LSSQ VRTLHAKGLS + IL +HGLKNVGVNLLT+ Sbjct: 203 LPALALAAGGIAEVSRQLRSSLVDLLSSQQVRTLHAKGLSPAAILCKHGLKNVGVNLLTV 262 Query: 248 VSLLVNRMLAATVVIEAVFAIPGLGSLIVRGAIQRDFPIVQGVVFTMVVVVIAVNLVTDL 307 V+LL NRMLAATVVIEAVFAIPG+G LIV+GA+ RDFP+VQGVVFTMV++VI +NL DL Sbjct: 263 VTLLANRMLAATVVIEAVFAIPGMGGLIVQGALSRDFPVVQGVVFTMVLIVITINLGADL 322 Query: 308 LCAAVDPRIE 317 L +DPR++ Sbjct: 323 LYGVIDPRVK 332 >ref|YP_004110362.1| binding-protein-dependent transporter inner membrane component [Rhodopseudomonas palustris DX-1] gb|ADU45629.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris DX-1] Length = 318 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 201/311 (64%), Positives = 255/311 (81%) Query: 7 VKVVGSRLVQALPVILLATFMVFALLKLVPGDIAVTLAGDNATDARITEIRKIYGLDRPF 66 ++++G RL+ A+PV++L+TF+VF LLKLVPGD+AVTLAGDNA++ RI EIR++YGL++PF Sbjct: 7 LRIIGRRLLHAVPVVVLSTFIVFGLLKLVPGDVAVTLAGDNASEQRIAEIRELYGLNQPF 66 Query: 67 LVQYGAWLGNVAQGDLSQSLLTGEKVADSIGRAFPNTLLIVVIALALALVTGIPMGVIAA 126 LVQYG+WL QGDLS SL++ E V SI R P+TLLIV +AL AL G+P+G+ AA Sbjct: 67 LVQYGSWLSKAVQGDLSTSLVSSEAVLTSIERCLPHTLLIVALALLTALAIGVPLGIAAA 126 Query: 127 IKPNGWVDKLISMLASLGVAVPGFWLAMILVAEFSLKLNWLPATGAKSFSASPVDAIRHA 186 KP W+D ++ +ASLGVAVP FWL M+LVA FSL+LNWLPATGA S P A+ HA Sbjct: 127 AKPGSWIDGIVMAVASLGVAVPNFWLGMLLVAFFSLQLNWLPATGAVSLMKDPAAALSHA 186 Query: 187 LLPGIAIAAYGMAEVARQLRGALLEVLSSQYVRTLHAKGLSMSRILWQHGLKNVGVNLLT 246 LLP +A+A+ G+AEVARQLR +L+E+LSSQ VRTLHAKGL S ILW+HGLKNV VNLLT Sbjct: 187 LLPALALASGGIAEVARQLRSSLVEILSSQQVRTLHAKGLPPSSILWRHGLKNVSVNLLT 246 Query: 247 IVSLLVNRMLAATVVIEAVFAIPGLGSLIVRGAIQRDFPIVQGVVFTMVVVVIAVNLVTD 306 ++SLL NRMLAATVV+EAVFAIPG+G LIV A+ RDFP+VQGVVFTMV++V+A+NL+TD Sbjct: 247 VISLLANRMLAATVVVEAVFAIPGMGGLIVNAAMNRDFPVVQGVVFTMVLIVVALNLLTD 306 Query: 307 LLCAAVDPRIE 317 +L + +DPRI Sbjct: 307 ILYSVLDPRIS 317