BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0249.0032.p         (123 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002665264.2| PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin...    34   8.4  
ref|ZP_08484388.1| SNF2-related protein [Methylomicrobium album ...    34   8.5  
ref|YP_826060.1| TonB family protein [Candidatus Solibacter usit...    33   9.8  

>ref|XP_002665264.2| PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin-protein ligase UBR1
            [Danio rerio]
          Length = 1697

 Score = 33.9 bits (76), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 22   QWCDNPLQALALSGELEFIRTPRIASEIT-----YAVAMHELGHIKSGDRSTDQ 70
            +WC N   + AL GE+  IR PR  + +      Y+V +++  H K  + S D+
Sbjct: 1515 RWCGNTAISKALKGEMHMIRYPRKRNRLIDLPEDYSVLLNQASHFKCPNSSDDE 1568


>ref|ZP_08484388.1| SNF2-related protein [Methylomicrobium album BG8]
 gb|EGL04518.1| SNF2-related protein [Methylomicrobium album BG8]
          Length = 1411

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 6   LKRHFLKLCADEEVDVQWCDNPLQALALSGELEFIRTPRIASEITYAVAMHELGHIKSGD 65
           + RH L L  D ++ ++W  NP  A  L       R P I  +I   +A+H+L H+ +  
Sbjct: 152 IGRHVLNLPPDHDIYLRWILNPFDAAWLKR-----RHPVILHDIAGYIALHQLSHLYADS 206

Query: 66  RSTDQIAR 73
              D ++R
Sbjct: 207 AIDDFLSR 214


>ref|YP_826060.1| TonB family protein [Candidatus Solibacter usitatus Ellin6076]
 gb|ABJ85775.1| TonB family protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 659

 Score = 33.5 bits (75), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 53  VAMHELGHIKSGDRSTDQIARERAAWDWARCNALKWT 89
           V MHEL H++ GD +T  +AR   A +W   N L W+
Sbjct: 209 VLMHELAHVRRGDAATHLVARTALALNW--WNPLAWS 243