BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0249.0027.p         (142 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001237060.1| hypothetical protein BBta_0896 [Bradyrhizobi...   213   5e-54
ref|YP_001208457.1| hypothetical protein BRADO6638 [Bradyrhizobi...   212   2e-53
ref|NP_767895.1| hypothetical protein blr1255 [Bradyrhizobium ja...   206   9e-52
ref|YP_487949.1| hypothetical protein RPB_4351 [Rhodopseudomonas...   201   3e-50
ref|YP_571398.1| hypothetical protein RPD_4280 [Rhodopseudomonas...   196   8e-49

>ref|YP_001237060.1| hypothetical protein BBta_0896 [Bradyrhizobium sp. BTAi1]
 gb|ABQ33154.1| hypothetical protein BBta_0896 [Bradyrhizobium sp. BTAi1]
          Length = 147

 Score =  213 bits (543), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 107/137 (78%), Positives = 118/137 (86%), Gaps = 1/137 (0%)

Query: 7   LKLIALDADDLAVISAHVQDARVQPSDIVWRQDEKRLVVGLNRLDWEQTLSGGTCSRRLI 66
           LKLIALDADDLAVISAHVQDARVQP+DI+WRQ EKRLV+G+NRLDW Q L G +  RRL+
Sbjct: 5   LKLIALDADDLAVISAHVQDARVQPADIIWRQAEKRLVIGMNRLDWAQALHGQSEPRRLL 64

Query: 67  AALRFDRVLACKSRNIDLEAPEATLELLGIEFY-ATDPPGGSALLMFGHGGALRLDVECL 125
           AALRFDRV ACKSR IDL APE  LEL+GIEF+   +PP GSALL+F HGGALRLDVECL
Sbjct: 65  AALRFDRVQACKSRRIDLAAPETVLELIGIEFHIGAEPPAGSALLLFAHGGALRLDVECL 124

Query: 126 ECELTDLGEDDLGMAPG 142
           ECELTDLGEDDLG + G
Sbjct: 125 ECELTDLGEDDLGTSDG 141


>ref|YP_001208457.1| hypothetical protein BRADO6638 [Bradyrhizobium sp. ORS 278]
 emb|CAL80242.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 150

 Score =  212 bits (539), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 107/135 (79%), Positives = 118/135 (87%), Gaps = 1/135 (0%)

Query: 7   LKLIALDADDLAVISAHVQDARVQPSDIVWRQDEKRLVVGLNRLDWEQTLSGGTCSRRLI 66
           LKLIALDADDLAVISAHVQDARVQP+DI+WRQ EKRLV+G+NRLDWEQ L G    RRL+
Sbjct: 5   LKLIALDADDLAVISAHVQDARVQPADIIWRQAEKRLVIGMNRLDWEQALHGENEPRRLL 64

Query: 67  AALRFDRVLACKSRNIDLEAPEATLELLGIEFY-ATDPPGGSALLMFGHGGALRLDVECL 125
           AALRFDRVLACKSR IDL AP+A LEL+GIEF+  T+ P GSALL+F HGGALRLDVECL
Sbjct: 65  AALRFDRVLACKSRRIDLAAPDAVLELIGIEFHPGTEAPAGSALLLFSHGGALRLDVECL 124

Query: 126 ECELTDLGEDDLGMA 140
           ECELTDLG DDLG +
Sbjct: 125 ECELTDLGADDLGTS 139


>ref|NP_767895.1| hypothetical protein blr1255 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46520.1| blr1255 [Bradyrhizobium japonicum USDA 110]
          Length = 150

 Score =  206 bits (524), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 108/142 (76%), Positives = 119/142 (83%), Gaps = 6/142 (4%)

Query: 1   MSPPAPLKLIALDADDLAVISAHVQDARVQPSDIVWRQDEKRLVVGLNRLDWEQTLSGGT 60
           MSP   LKLIALDADDLAVIS HVQDARVQ SDI+WRQ EKRLVVG++RLDWEQTL G T
Sbjct: 4   MSPQ--LKLIALDADDLAVISTHVQDARVQASDIIWRQSEKRLVVGMSRLDWEQTLDGET 61

Query: 61  CSRRLIAALRFDRVLACKSRNIDLEAPEATLELLGIEFYATD----PPGGSALLMFGHGG 116
             RRL+AALRFDRVLACKSRNIDL AP+  L+L+GIEF+  D     PGGSALL+F  GG
Sbjct: 62  EPRRLVAALRFDRVLACKSRNIDLGAPDEVLDLVGIEFHPQDGHDEEPGGSALLLFAQGG 121

Query: 117 ALRLDVECLECELTDLGEDDLG 138
           A+RLDVECLECELTDLG D+LG
Sbjct: 122 AIRLDVECLECELTDLGADELG 143


>ref|YP_487949.1| hypothetical protein RPB_4351 [Rhodopseudomonas palustris HaA2]
 gb|ABD09038.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 152

 Score =  201 bits (511), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 105/133 (78%), Positives = 112/133 (84%), Gaps = 1/133 (0%)

Query: 7   LKLIALDADDLAVISAHVQDARVQPSDIVWRQDEKRLVVGLNRLDWEQTLSGGTCSRRLI 66
           LKL+ALD DDLAVISAHVQDARV+  DIVWRQ EKRLVVGL+RLDWEQTLSG     RLI
Sbjct: 4   LKLLALDPDDLAVISAHVQDARVETGDIVWRQTEKRLVVGLHRLDWEQTLSGEPVPGRLI 63

Query: 67  AALRFDRVLACKSRNIDLEAPEATLELLGIEFY-ATDPPGGSALLMFGHGGALRLDVECL 125
           AALRFDRVLACKSRNI ++APE  LELLGIEFY A +PPGGS +LMF  GG LRLDVECL
Sbjct: 64  AALRFDRVLACKSRNIAIDAPETALELLGIEFYPAQEPPGGSVVLMFSRGGMLRLDVECL 123

Query: 126 ECELTDLGEDDLG 138
           EC LTDLG D LG
Sbjct: 124 ECALTDLGPDHLG 136


>ref|YP_571398.1| hypothetical protein RPD_4280 [Rhodopseudomonas palustris BisB5]
 gb|ABE41497.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 148

 Score =  196 bits (499), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 102/133 (76%), Positives = 111/133 (83%), Gaps = 1/133 (0%)

Query: 7   LKLIALDADDLAVISAHVQDARVQPSDIVWRQDEKRLVVGLNRLDWEQTLSGGTCSRRLI 66
           LKL+ALD DDLAVISAHVQDARV+  DIVWRQ EKRLVVGL+RLDWEQTLSG     RLI
Sbjct: 4   LKLLALDPDDLAVISAHVQDARVETGDIVWRQAEKRLVVGLHRLDWEQTLSGDPIPGRLI 63

Query: 67  AALRFDRVLACKSRNIDLEAPEATLELLGIEFY-ATDPPGGSALLMFGHGGALRLDVECL 125
           AALRFDRVLACKSRNID+ APE +LEL+GIEFY A + P GS +LMF  GG LRLD+ECL
Sbjct: 64  AALRFDRVLACKSRNIDIGAPETSLELIGIEFYPAQEAPAGSVVLMFSRGGMLRLDIECL 123

Query: 126 ECELTDLGEDDLG 138
           EC LTDLG D LG
Sbjct: 124 ECALTDLGPDHLG 136