BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0249.0017.p         (194 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_770464.1| hypothetical protein blr3824 [Bradyrhizobium ja...   365   1e-99
ref|YP_001238500.1| hypothetical protein BBta_2427 [Bradyrhizobi...   345   2e-93
ref|YP_001204208.1| hypothetical protein BRADO2118 [Bradyrhizobi...   342   2e-92
ref|ZP_08628997.1| hypothetical protein CSIRO_2082 [Bradyrhizobi...   338   3e-91
ref|YP_485283.1| hypothetical protein RPB_1664 [Rhodopseudomonas...   323   7e-87

>ref|NP_770464.1| hypothetical protein blr3824 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49089.1| blr3824 [Bradyrhizobium japonicum USDA 110]
          Length = 194

 Score =  365 bits (938), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 182/194 (93%), Positives = 189/194 (97%)

Query: 1   MSAVIRKIVTVVEETHLEMGKTIAPPTRRAAAIAVIENPFAGRYVEDLSPLIAIGEELGE 60
           MSA+IRKIVTVVEET +EMG+ ++PPTRRAAAIAVIENPFAG+YVEDL+PLIAIGEELGE
Sbjct: 1   MSAIIRKIVTVVEETQMEMGRQVSPPTRRAAAIAVIENPFAGQYVEDLAPLIAIGEELGE 60

Query: 61  LLSKRAVAALGIDGAKAHSYGKAAAVGENGELEHAAAILHPKMGAPVRKVLSKGAALIPS 120
           LLSKRAVAALGIDGAK  SYGKAAAVGENGELEHAAAILHPKMGAPVRKVLSKGAALIPS
Sbjct: 61  LLSKRAVAALGIDGAKVQSYGKAAAVGENGELEHAAAILHPKMGAPVRKVLSKGAALIPS 120

Query: 121 SKKRSGPGTTLDIPLGHKDAAFVRSHFDGMEVQINDAPRANEIMVAVAVTDSGRPLPRVG 180
           SKKRSGPGTTLDIPLGHKDAAFVRSHFDGMEVQINDAPRANEIMVAVAVTDSGRPLPRVG
Sbjct: 121 SKKRSGPGTTLDIPLGHKDAAFVRSHFDGMEVQINDAPRANEIMVAVAVTDSGRPLPRVG 180

Query: 181 GLTVGEIKGEDGLR 194
           GLTV EIKGEDGLR
Sbjct: 181 GLTVAEIKGEDGLR 194


>ref|YP_001238500.1| hypothetical protein BBta_2427 [Bradyrhizobium sp. BTAi1]
 gb|ABQ34594.1| hypothetical protein BBta_2427 [Bradyrhizobium sp. BTAi1]
          Length = 194

 Score =  345 bits (885), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 174/194 (89%), Positives = 183/194 (94%)

Query: 1   MSAVIRKIVTVVEETHLEMGKTIAPPTRRAAAIAVIENPFAGRYVEDLSPLIAIGEELGE 60
           MSAVIRKIVTVVEE H EMG+ I+PPTRRAAA+AVIENPFAGRYVEDLSPLIAIGEELGE
Sbjct: 1   MSAVIRKIVTVVEEVHQEMGRPISPPTRRAAAVAVIENPFAGRYVEDLSPLIAIGEELGE 60

Query: 61  LLSKRAVAALGIDGAKAHSYGKAAAVGENGELEHAAAILHPKMGAPVRKVLSKGAALIPS 120
           +L+KRAVAALGI+G  AHSYGKAAAVG +GELEHAAAILHPKMGAPVRKVL KGAALIPS
Sbjct: 61  MLAKRAVAALGIEGPAAHSYGKAAAVGSDGELEHAAAILHPKMGAPVRKVLGKGAALIPS 120

Query: 121 SKKRSGPGTTLDIPLGHKDAAFVRSHFDGMEVQINDAPRANEIMVAVAVTDSGRPLPRVG 180
           SKKR G G TLDIPLGHKDAAFVRSHFDGMEVQINDAPRANEIMVA+AVTDSGRPLPRVG
Sbjct: 121 SKKRGGVGCTLDIPLGHKDAAFVRSHFDGMEVQINDAPRANEIMVALAVTDSGRPLPRVG 180

Query: 181 GLTVGEIKGEDGLR 194
           GLTV EIKG+DGLR
Sbjct: 181 GLTVAEIKGDDGLR 194


>ref|YP_001204208.1| hypothetical protein BRADO2118 [Bradyrhizobium sp. ORS 278]
 emb|CAL75971.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 194

 Score =  342 bits (876), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 173/194 (89%), Positives = 182/194 (93%)

Query: 1   MSAVIRKIVTVVEETHLEMGKTIAPPTRRAAAIAVIENPFAGRYVEDLSPLIAIGEELGE 60
           MSAVIRKIVTVVEE   EMGKTI+PPTRRAAA+AVIENPFAGRYVEDLSPLIAIGEELG+
Sbjct: 1   MSAVIRKIVTVVEEVRQEMGKTISPPTRRAAAVAVIENPFAGRYVEDLSPLIAIGEELGD 60

Query: 61  LLSKRAVAALGIDGAKAHSYGKAAAVGENGELEHAAAILHPKMGAPVRKVLSKGAALIPS 120
           +L+KRAVAALGI+G  AHSYGKAAAVG +GELEHAAAILHPKMGAPVRKVL KGAALIPS
Sbjct: 61  MLAKRAVAALGIEGPAAHSYGKAAAVGSDGELEHAAAILHPKMGAPVRKVLGKGAALIPS 120

Query: 121 SKKRSGPGTTLDIPLGHKDAAFVRSHFDGMEVQINDAPRANEIMVAVAVTDSGRPLPRVG 180
           SKKR G G TLDIPLGHKDAAFVRSHFDGMEVQINDAPRA EIMVA+AVTDSGRPLPRVG
Sbjct: 121 SKKRGGVGCTLDIPLGHKDAAFVRSHFDGMEVQINDAPRAGEIMVALAVTDSGRPLPRVG 180

Query: 181 GLTVGEIKGEDGLR 194
           GLTV EIKG+DGLR
Sbjct: 181 GLTVAEIKGDDGLR 194


>ref|ZP_08628997.1| hypothetical protein CSIRO_2082 [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP08356.1| hypothetical protein CSIRO_2082 [Bradyrhizobiaceae bacterium SG-6C]
          Length = 194

 Score =  338 bits (866), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 171/194 (88%), Positives = 182/194 (93%)

Query: 1   MSAVIRKIVTVVEETHLEMGKTIAPPTRRAAAIAVIENPFAGRYVEDLSPLIAIGEELGE 60
           M+AVIRKIVTVVEET +E G+ +APPTRRAAAIAVIENPFAG+Y ++L PLIAIGEELGE
Sbjct: 1   MNAVIRKIVTVVEETLIEGGRDVAPPTRRAAAIAVIENPFAGKYADNLDPLIAIGEELGE 60

Query: 61  LLSKRAVAALGIDGAKAHSYGKAAAVGENGELEHAAAILHPKMGAPVRKVLSKGAALIPS 120
           LL+ +AVAALGI+G+KA SYGKAAAVGENGELEHAAAILHPKMGAPVRKVLSKGAALIPS
Sbjct: 61  LLAMKAVAALGIEGSKAQSYGKAAAVGENGELEHAAAILHPKMGAPVRKVLSKGAALIPS 120

Query: 121 SKKRSGPGTTLDIPLGHKDAAFVRSHFDGMEVQINDAPRANEIMVAVAVTDSGRPLPRVG 180
           SKKR G G  LDIPLGHKDAAFVRSHFDGMEVQINDAPRANEIMVAVAVTDSGRPLPRVG
Sbjct: 121 SKKRGGLGAVLDIPLGHKDAAFVRSHFDGMEVQINDAPRANEIMVAVAVTDSGRPLPRVG 180

Query: 181 GLTVGEIKGEDGLR 194
           GLTV EIKGEDGLR
Sbjct: 181 GLTVDEIKGEDGLR 194


>ref|YP_485283.1| hypothetical protein RPB_1664 [Rhodopseudomonas palustris HaA2]
 gb|ABD06372.1| Protein of unknown function DUF1185 [Rhodopseudomonas palustris
           HaA2]
          Length = 194

 Score =  323 bits (829), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 162/194 (83%), Positives = 175/194 (90%)

Query: 1   MSAVIRKIVTVVEETHLEMGKTIAPPTRRAAAIAVIENPFAGRYVEDLSPLIAIGEELGE 60
           MSA IRKIV VVEET  EMG+++ PPTRRAAA+AVIENPFAGRYVEDLS LIAIGEELGE
Sbjct: 1   MSAKIRKIVVVVEETLTEMGRSVTPPTRRAAAVAVIENPFAGRYVEDLSELIAIGEELGE 60

Query: 61  LLSKRAVAALGIDGAKAHSYGKAAAVGENGELEHAAAILHPKMGAPVRKVLSKGAALIPS 120
           LL+++AV ALGIDG KA SYGKAA VGENGELEHAAA+LHPKMGAPVRKVL KGAALIPS
Sbjct: 61  LLAQKAVDALGIDGGKAESYGKAALVGENGELEHAAALLHPKMGAPVRKVLGKGAALIPS 120

Query: 121 SKKRSGPGTTLDIPLGHKDAAFVRSHFDGMEVQINDAPRANEIMVAVAVTDSGRPLPRVG 180
           SK+R G G  LDIPLGHKDAAFVRSHFDGM+V + DAPRANEI+VAVA+TDSGRPLPRVG
Sbjct: 121 SKRRGGLGAELDIPLGHKDAAFVRSHFDGMQVSVADAPRANEIVVAVAITDSGRPLPRVG 180

Query: 181 GLTVGEIKGEDGLR 194
           GLT  EIKGEDGLR
Sbjct: 181 GLTTAEIKGEDGLR 194