BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0249.0016.p         (171 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_770465.1| ABC transporter substrate-binding protein [Brad...   239   1e-61
ref|ZP_08628998.1| ABC transporter substrate-binding protein [Br...   236   1e-60
ref|YP_001204209.1| putative branched-chain amino acid ABC trans...   228   2e-58
ref|YP_001238501.1| putative branched-chain amino acid ABC trans...   220   6e-56
ref|YP_001525710.1| ABC transporter substrate-binding protein [A...   200   7e-50

>ref|NP_770465.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum
           USDA 110]
 dbj|BAC49090.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum
           USDA 110]
          Length = 400

 Score =  239 bits (609), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 120/141 (85%), Positives = 124/141 (87%), Gaps = 6/141 (4%)

Query: 2   RGYFVGAGLAIAVATMATSAMTTQALAQSEIKIGEINSYSLLPAFTEPYRKGWQLAVEEI 61
           R YFVGA  A+    MA SAM        +IKIGEINSYSLLPAFTEPYRKGWQLAVEEI
Sbjct: 4   RNYFVGAAFALLAGGMAHSAMA------QDIKIGEINSYSLLPAFTEPYRKGWQLAVEEI 57

Query: 62  NAAGGINGKKLVVVSKDDGGKPADAQTAANELVSSENVAMLTGTFLSNIGLAVSDFANQK 121
           NAAGGINGKKLVVVSKDDGGKPADAQTAANELVSSE VAMLTGTFLSNIGLAVSDFANQK
Sbjct: 58  NAAGGINGKKLVVVSKDDGGKPADAQTAANELVSSEGVAMLTGTFLSNIGLAVSDFANQK 117

Query: 122 KVFFLAAEPLTDAITWSKGNR 142
           KVFFLAAEPLTDA+TWSKGN+
Sbjct: 118 KVFFLAAEPLTDAVTWSKGNK 138


>ref|ZP_08628998.1| ABC transporter substrate-binding protein [Bradyrhizobiaceae
           bacterium SG-6C]
 gb|EGP08357.1| ABC transporter substrate-binding protein [Bradyrhizobiaceae
           bacterium SG-6C]
          Length = 410

 Score =  236 bits (602), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 122/137 (89%), Positives = 127/137 (92%), Gaps = 2/137 (1%)

Query: 8   AGLAIAVAT-MATSAMTTQALAQS-EIKIGEINSYSLLPAFTEPYRKGWQLAVEEINAAG 65
           +GLAIA    +A SA+ T A+AQS EIKIGEINSYSLLPAFTEPYRKGWQLAVEEINAAG
Sbjct: 12  SGLAIAAGLGLAGSALATTAMAQSGEIKIGEINSYSLLPAFTEPYRKGWQLAVEEINAAG 71

Query: 66  GINGKKLVVVSKDDGGKPADAQTAANELVSSENVAMLTGTFLSNIGLAVSDFANQKKVFF 125
           GINGKKLVVVSKDD GKPADAQTAANELVS+ENVAMLTGTFLSNIGLAVSDFA QKKVFF
Sbjct: 72  GINGKKLVVVSKDDSGKPADAQTAANELVSNENVAMLTGTFLSNIGLAVSDFAKQKKVFF 131

Query: 126 LAAEPLTDAITWSKGNR 142
           LAAEPLTDAITWSKGNR
Sbjct: 132 LAAEPLTDAITWSKGNR 148


>ref|YP_001204209.1| putative branched-chain amino acid ABC transporter periplasmic
           substrate-binding protein [Bradyrhizobium sp. ORS 278]
 emb|CAL75972.1| putative branched-chain amino acid ABC transporter, periplasmic
           substrate-binding protein [Bradyrhizobium sp. ORS 278]
          Length = 405

 Score =  228 bits (581), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 117/141 (82%), Positives = 123/141 (87%), Gaps = 5/141 (3%)

Query: 2   RGYFVGAGLAIAVATMATSAMTTQALAQSEIKIGEINSYSLLPAFTEPYRKGWQLAVEEI 61
           R   + AGL +AVA +  +A      A+  IKIGEINSYSLLPAFTEPYRKGWQLAVEEI
Sbjct: 8   RRTMLAAGLGLAVAGLMGTAR-----AEDVIKIGEINSYSLLPAFTEPYRKGWQLAVEEI 62

Query: 62  NAAGGINGKKLVVVSKDDGGKPADAQTAANELVSSENVAMLTGTFLSNIGLAVSDFANQK 121
           NAAGGINGKKLVVVSKDD GKPADAQTAANELVSSENVAML GTFLSNIGLAVSDFANQK
Sbjct: 63  NAAGGINGKKLVVVSKDDSGKPADAQTAANELVSSENVAMLAGTFLSNIGLAVSDFANQK 122

Query: 122 KVFFLAAEPLTDAITWSKGNR 142
           KVFFLAAEPLTDAITWSKGN+
Sbjct: 123 KVFFLAAEPLTDAITWSKGNK 143


>ref|YP_001238501.1| putative branched-chain amino acid ABC transporter periplasmic
           substrate- binding protein [Bradyrhizobium sp. BTAi1]
 gb|ABQ34595.1| amino acid/amide ABC transporter substrate-binding protein, HAAT
           family [Bradyrhizobium sp. BTAi1]
          Length = 395

 Score =  220 bits (561), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 106/111 (95%), Positives = 109/111 (98%)

Query: 32  IKIGEINSYSLLPAFTEPYRKGWQLAVEEINAAGGINGKKLVVVSKDDGGKPADAQTAAN 91
           IKIGEINSYSLLPAFTEPYRKGWQLAVEE+NAAGGINGKKLVVVSKDD GKPADAQTAAN
Sbjct: 23  IKIGEINSYSLLPAFTEPYRKGWQLAVEEVNAAGGINGKKLVVVSKDDSGKPADAQTAAN 82

Query: 92  ELVSSENVAMLTGTFLSNIGLAVSDFANQKKVFFLAAEPLTDAITWSKGNR 142
           ELVSSENVAML GTFLSNIGLAVSDFANQKKVFFLAAEPLTDAITW+KGN+
Sbjct: 83  ELVSSENVAMLAGTFLSNIGLAVSDFANQKKVFFLAAEPLTDAITWAKGNK 133


>ref|YP_001525710.1| ABC transporter substrate-binding protein [Azorhizobium caulinodans
           ORS 571]
 dbj|BAF88792.1| ABC transporter substrate binding protein [Azorhizobium caulinodans
           ORS 571]
          Length = 411

 Score =  200 bits (508), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 95/114 (83%), Positives = 105/114 (92%)

Query: 29  QSEIKIGEINSYSLLPAFTEPYRKGWQLAVEEINAAGGINGKKLVVVSKDDGGKPADAQT 88
           Q E+K+GEINSYS LPAFTEPYRKGWQLAVEEINA+GG+ GKK VVVSKDDGGKPADA T
Sbjct: 36  QGEVKVGEINSYSGLPAFTEPYRKGWQLAVEEINASGGVLGKKFVVVSKDDGGKPADAVT 95

Query: 89  AANELVSSENVAMLTGTFLSNIGLAVSDFANQKKVFFLAAEPLTDAITWSKGNR 142
           AANELVSSE VAMLTGTF SNIGLAV+D+A QKKV FLAAEPLTDA+TW++GN+
Sbjct: 96  AANELVSSEGVAMLTGTFFSNIGLAVADYAKQKKVLFLAAEPLTDAMTWAQGNK 149