BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0249.0014.p (882 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770466.1| ABC transporter permease protein [Bradyrhizobiu... 665 0.0 ref|YP_001238502.1| putative high-affinity branched-chain amino ... 655 0.0 ref|ZP_08628999.1| ABC transporter permease protein [Bradyrhizob... 653 0.0 ref|YP_001204210.1| putative high-affinity branched-chain amino ... 650 0.0 ref|ZP_08627008.1| ABC transporter permease protein [Bradyrhizob... 630 e-178 >ref|NP_770466.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC49091.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 629 Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/386 (92%), Positives = 370/386 (95%) Query: 1 MAFYVVQFLTGLASAASLFLVASGLSIIFGVTRIVNFAHGAFYMLGAYVAFTLTERFSGA 60 MAFYVVQFLTGLASAASLFLVASGLSIIFGVTRIVNFAHGAFYM+GAY+AFTLTER SGA Sbjct: 1 MAFYVVQFLTGLASAASLFLVASGLSIIFGVTRIVNFAHGAFYMIGAYIAFTLTERLSGA 60 Query: 61 LGFWGGIVVAALAVAAIGVLVEMVLLRRIYHSPELFQLLATFGLTLMVEDLVVLIWGPDD 120 GFWG IV AALAVA IGV+VEMVLLRRIYH+PELFQLLATFGLTLMVEDLVVLIWGPDD Sbjct: 61 FGFWGSIVAAALAVALIGVIVEMVLLRRIYHAPELFQLLATFGLTLMVEDLVVLIWGPDD 120 Query: 121 LVGRRAPGFKGAIDFFGQNIPSYDLFLIVLGPVVLGVLWLLFQRTRWGVLVRAATQDRDM 180 LVGRRAPGFKGAIDFFGQNIPSYDLFLI LGPVVLG+LWLLFQRTRWGVLVRAATQDRDM Sbjct: 121 LVGRRAPGFKGAIDFFGQNIPSYDLFLIGLGPVVLGILWLLFQRTRWGVLVRAATQDRDM 180 Query: 181 VAALGVNQKWLFTSVFALGVFLAALGGALQIPRDAVNHAMDLRVIVEVFVVVVIGGLGSI 240 VAALGVNQKWLFTSVFA+GVFLAALGGALQIPRDAV+HAMDLR+IVEVFVVVVIGGLGSI Sbjct: 181 VAALGVNQKWLFTSVFAVGVFLAALGGALQIPRDAVHHAMDLRIIVEVFVVVVIGGLGSI 240 Query: 241 IGAFVAAVLVSELNAFGILIFPKISIILVFLVMAVVLIVRPWGLFGKPEAPARRTPGLTV 300 +GAFVAAVLVSELNAFGILIFPKISIILVFLVMAVVLIVRPWGLFGKPEA AR+TPGLTV Sbjct: 241 VGAFVAAVLVSELNAFGILIFPKISIILVFLVMAVVLIVRPWGLFGKPEAAARKTPGLTV 300 Query: 301 NPWRPLTMNERFAAIAVLVFAAALPFVAGNYVLTVGSEIAIFVIFAVSLHFLMSVGGLAS 360 NPWRPL+ NER AA+A LV AA LP AGNY LTVGSEIAIFVIFAVSLHFLMSVGGLAS Sbjct: 301 NPWRPLSSNERLAALATLVIAATLPLFAGNYALTVGSEIAIFVIFAVSLHFLMSVGGLAS 360 Query: 361 FGHAAYFGLGAYGVALLAKMAGLPMI 386 FGHAAYFGLGAYG+A LAKMAGLPMI Sbjct: 361 FGHAAYFGLGAYGIAFLAKMAGLPMI 386 >ref|YP_001238502.1| putative high-affinity branched-chain amino acid transport system permease [Bradyrhizobium sp. BTAi1] gb|ABQ34596.1| amino acid/amide ABC transporter membrane protein 2, HAAT family / amino acid/amide ABC transporter membrane protein 1, HAAT family [Bradyrhizobium sp. BTAi1] Length = 628 Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/389 (89%), Positives = 369/389 (94%) Query: 1 MAFYVVQFLTGLASAASLFLVASGLSIIFGVTRIVNFAHGAFYMLGAYVAFTLTERFSGA 60 MAFY VQFLTGLASAASLFLVASGLSIIFGVTRIVNFAHGAFYMLGAY+AF+LTER SGA Sbjct: 1 MAFYFVQFLTGLASAASLFLVASGLSIIFGVTRIVNFAHGAFYMLGAYIAFSLTERLSGA 60 Query: 61 LGFWGGIVVAALAVAAIGVLVEMVLLRRIYHSPELFQLLATFGLTLMVEDLVVLIWGPDD 120 LGFWGGIVVAALAVA IGV+VE+VLLRRIYH+PELFQLLATFGLTLMVEDLVVLIWGPDD Sbjct: 61 LGFWGGIVVAALAVAVIGVIVEIVLLRRIYHAPELFQLLATFGLTLMVEDLVVLIWGPDD 120 Query: 121 LVGRRAPGFKGAIDFFGQNIPSYDLFLIVLGPVVLGVLWLLFQRTRWGVLVRAATQDRDM 180 LVGRRAPGFKGA+DFFGQNIPSYDLFLIVLGPVVLG LWLLFQRTRWG+LVRAATQDRDM Sbjct: 121 LVGRRAPGFKGAVDFFGQNIPSYDLFLIVLGPVVLGALWLLFQRTRWGILVRAATQDRDM 180 Query: 181 VAALGVNQKWLFTSVFALGVFLAALGGALQIPRDAVNHAMDLRVIVEVFVVVVIGGLGSI 240 VAALGVNQKWLFTSVFA+GVFLAALGGALQIPRDAV+HAMDLR+IVEVFVVVVIGGLGSI Sbjct: 181 VAALGVNQKWLFTSVFAVGVFLAALGGALQIPRDAVHHAMDLRIIVEVFVVVVIGGLGSI 240 Query: 241 IGAFVAAVLVSELNAFGILIFPKISIILVFLVMAVVLIVRPWGLFGKPEAPARRTPGLTV 300 +GAFVAAVLVSELNAFGILIFP IS+ILVFLVMAVVL++RPWGLFGK EAPARRTPGLTV Sbjct: 241 LGAFVAAVLVSELNAFGILIFPTISLILVFLVMAVVLVIRPWGLFGKKEAPARRTPGLTV 300 Query: 301 NPWRPLTMNERFAAIAVLVFAAALPFVAGNYVLTVGSEIAIFVIFAVSLHFLMSVGGLAS 360 PWRPLT ER A++ L A LPF+AGNY LTVG+EIAIFVIFA SLHFLM+VGGLAS Sbjct: 301 IPWRPLTSVERLASVVALALVAMLPFIAGNYALTVGAEIAIFVIFAASLHFLMAVGGLAS 360 Query: 361 FGHAAYFGLGAYGVALLAKMAGLPMIACL 389 FGHAAYFGLGAYGVA LAKMAGLPMI C+ Sbjct: 361 FGHAAYFGLGAYGVAFLAKMAGLPMIVCI 389 >ref|ZP_08628999.1| ABC transporter permease protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08358.1| ABC transporter permease protein [Bradyrhizobiaceae bacterium SG-6C] Length = 628 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/388 (90%), Positives = 368/388 (94%) Query: 1 MAFYVVQFLTGLASAASLFLVASGLSIIFGVTRIVNFAHGAFYMLGAYVAFTLTERFSGA 60 M+FY QFLTGLASAASLFLVASGLSIIFGVTRIVNFAHGAFYMLGAYVAFTLTER SGA Sbjct: 1 MSFYFAQFLTGLASAASLFLVASGLSIIFGVTRIVNFAHGAFYMLGAYVAFTLTERLSGA 60 Query: 61 LGFWGGIVVAALAVAAIGVLVEMVLLRRIYHSPELFQLLATFGLTLMVEDLVVLIWGPDD 120 LGFWGGIV+AALAVA +GVLVEMVLLRRIY SPELFQLLATFGLTLMVED+VVLIWGPDD Sbjct: 61 LGFWGGIVIAALAVALLGVLVEMVLLRRIYKSPELFQLLATFGLTLMVEDIVVLIWGPDD 120 Query: 121 LVGRRAPGFKGAIDFFGQNIPSYDLFLIVLGPVVLGVLWLLFQRTRWGVLVRAATQDRDM 180 LVGRRAPGF+GA+DFFGQNIPSYDLFLIVLGPVVLG LWLLF+RTRWGVLVRAATQDRDM Sbjct: 121 LVGRRAPGFRGAVDFFGQNIPSYDLFLIVLGPVVLGALWLLFRRTRWGVLVRAATQDRDM 180 Query: 181 VAALGVNQKWLFTSVFALGVFLAALGGALQIPRDAVNHAMDLRVIVEVFVVVVIGGLGSI 240 VAALGVNQKWLFTSVFA+GVFLAALGGALQIPRDAV+HAMDLR+IV+VFVVVVIGGLGSI Sbjct: 181 VAALGVNQKWLFTSVFAVGVFLAALGGALQIPRDAVHHAMDLRIIVDVFVVVVIGGLGSI 240 Query: 241 IGAFVAAVLVSELNAFGILIFPKISIILVFLVMAVVLIVRPWGLFGKPEAPARRTPGLTV 300 GAFVAAVLVSELNAFGILIFPKISIILVFLVMA VLIVRPWGLFGKPEAPAR+TPGL+V Sbjct: 241 TGAFVAAVLVSELNAFGILIFPKISIILVFLVMAAVLIVRPWGLFGKPEAPARKTPGLSV 300 Query: 301 NPWRPLTMNERFAAIAVLVFAAALPFVAGNYVLTVGSEIAIFVIFAVSLHFLMSVGGLAS 360 PWRPLT NER AA+AVLV AAALP GNY LTVG+EIA+FV+FA SLHFLMS GGLAS Sbjct: 301 RPWRPLTTNERLAALAVLVIAAALPLFGGNYALTVGAEIAVFVVFAASLHFLMSAGGLAS 360 Query: 361 FGHAAYFGLGAYGVALLAKMAGLPMIAC 388 FGHAAYFGLGAYGVA LAK AGLPMIAC Sbjct: 361 FGHAAYFGLGAYGVAFLAKAAGLPMIAC 388 >ref|YP_001204210.1| putative high-affinity branched-chain amino acid transport system permease livM [Bradyrhizobium sp. ORS 278] emb|CAL75973.1| putative high-affinity branched-chain amino acid transport system permease protein livM [Bradyrhizobium sp. ORS 278] Length = 628 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/386 (90%), Positives = 367/386 (95%) Query: 1 MAFYVVQFLTGLASAASLFLVASGLSIIFGVTRIVNFAHGAFYMLGAYVAFTLTERFSGA 60 MAFY VQFLTGLASAASLFLVASGLSIIFGVTRIVNFAHGAFYMLGAYVAF+LTER SG Sbjct: 1 MAFYFVQFLTGLASAASLFLVASGLSIIFGVTRIVNFAHGAFYMLGAYVAFSLTERLSGP 60 Query: 61 LGFWGGIVVAALAVAAIGVLVEMVLLRRIYHSPELFQLLATFGLTLMVEDLVVLIWGPDD 120 LGFWGGIVVAALAVA IGVLVE+VLLRRIYH+PELFQLL TFGLTLMVEDLVVLIWGPDD Sbjct: 61 LGFWGGIVVAALAVAVIGVLVEIVLLRRIYHAPELFQLLGTFGLTLMVEDLVVLIWGPDD 120 Query: 121 LVGRRAPGFKGAIDFFGQNIPSYDLFLIVLGPVVLGVLWLLFQRTRWGVLVRAATQDRDM 180 LVGRRAPGFKGA+DFFGQNIPSYDLFLIVLGPVVLG LWLLFQRTRWG+LVRAATQDRDM Sbjct: 121 LVGRRAPGFKGAVDFFGQNIPSYDLFLIVLGPVVLGALWLLFQRTRWGILVRAATQDRDM 180 Query: 181 VAALGVNQKWLFTSVFALGVFLAALGGALQIPRDAVNHAMDLRVIVEVFVVVVIGGLGSI 240 VAALGVNQKWLFTSVFA+GVFLAALGGALQIPRDAV+HAMDLR+IVEVFVVVVIGGLGSI Sbjct: 181 VAALGVNQKWLFTSVFAVGVFLAALGGALQIPRDAVHHAMDLRIIVEVFVVVVIGGLGSI 240 Query: 241 IGAFVAAVLVSELNAFGILIFPKISIILVFLVMAVVLIVRPWGLFGKPEAPARRTPGLTV 300 +GAFVAAVLVSELNAFGILIFP IS+ILVFLVMAVVL+VRPWGLFG+ EAPARRTPGLTV Sbjct: 241 LGAFVAAVLVSELNAFGILIFPTISLILVFLVMAVVLVVRPWGLFGRKEAPARRTPGLTV 300 Query: 301 NPWRPLTMNERFAAIAVLVFAAALPFVAGNYVLTVGSEIAIFVIFAVSLHFLMSVGGLAS 360 PWRPL+ ER A++ L FAA LPF+AGNY LTVGSEIAIFVIFA SLHFLM+VGGLAS Sbjct: 301 IPWRPLSSVERLASLVALAFAAMLPFIAGNYALTVGSEIAIFVIFAASLHFLMAVGGLAS 360 Query: 361 FGHAAYFGLGAYGVALLAKMAGLPMI 386 FGHAAYFGLGAYGVA LAKMAGLPMI Sbjct: 361 FGHAAYFGLGAYGVAFLAKMAGLPMI 386 >ref|ZP_08627008.1| ABC transporter permease protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP10288.1| ABC transporter permease protein [Bradyrhizobiaceae bacterium SG-6C] Length = 434 Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust. Identities = 357/433 (82%), Positives = 382/433 (88%), Gaps = 10/433 (2%) Query: 1 MAFYVVQFLTGLASAASLFLVASGLSIIFGVTRIVNFAHGAFYMLGAYVAFTLTERFSGA 60 MAFY VQFLTGLASA+SLFL+ASGLSIIFGVTRIVNFAHGAFYMLGAY+A+TLTERF+GA Sbjct: 1 MAFYFVQFLTGLASASSLFLMASGLSIIFGVTRIVNFAHGAFYMLGAYIAYTLTERFAGA 60 Query: 61 LGFWGGIVVAALAVAAIGVLVEMVLLRRIYHSPELFQLLATFGLTLMVEDLVVLIWGPDD 120 LGFWGGI VAAL VA IGVLVE+V LRRIYH+PELFQLLATFGLTLMVEDLVVLIWG D Sbjct: 61 LGFWGGIAVAALVVALIGVLVEIVFLRRIYHAPELFQLLATFGLTLMVEDLVVLIWGSAD 120 Query: 121 LVGRRAPGFKGAIDFFGQNIPSYDLFLIVLGPVVLGVLWLLFQRTRWGVLVRAATQDRDM 180 L+GRRAPGFKGA+DFFGQ IP YDLFLI+LGP+VL LW LF +RWGVLVRAATQDRDM Sbjct: 121 LLGRRAPGFKGALDFFGQKIPEYDLFLILLGPLVLLALWTLFHLSRWGVLVRAATQDRDM 180 Query: 181 VAALGVNQKWLFTSVFALGVFLAALGGALQIPRDAVNHAMDLRVIVEVFVVVVIGGLGSI 240 VAALGVNQKWLFT VFALGVFLA LGGALQIPRDAVNH MDLR+IVEVFVVV+IGGLGSI Sbjct: 181 VAALGVNQKWLFTGVFALGVFLAGLGGALQIPRDAVNHTMDLRIIVEVFVVVIIGGLGSI 240 Query: 241 IGAFVAAVLVSELNAFGILIFPKISIILVFLVMAVVLIVRPWGLFGKPEAPARRTPGLTV 300 GAFVAAVLVSELNAFGIL+FPKISIILVFLVMAVVLIVRPWGLFGKP+AP RRTPGLTV Sbjct: 241 TGAFVAAVLVSELNAFGILVFPKISIILVFLVMAVVLIVRPWGLFGKPDAPVRRTPGLTV 300 Query: 301 NPWRPLTMNERFAAIAVLVFAAALPFVAGNYVLTVGSEIAIFVIFAVSLHFLMSVGGLAS 360 NPWRPLT NER A+ A LV AAALP G Y+L+V SEIAIFVIFAVSLHFLMSVGGLAS Sbjct: 301 NPWRPLTTNERLASFAALVLAAALPLFGGTYILSVASEIAIFVIFAVSLHFLMSVGGLAS 360 Query: 361 FGHAAYFGLGAYGVALLAKMAGLPMIACLR----------RRIRLLRRAALRGLFRDADP 410 FGHAAYFGLGAYGVA LAK+AG+PMIACL +R+ RRAALR LF DAD Sbjct: 361 FGHAAYFGLGAYGVAFLAKLAGMPMIACLLLGPLAGPLRGSDLRIFRRAALRCLFCDADA 420 Query: 411 GLCPDRLVDRVPM 423 + DR+VDRV M Sbjct: 421 RVRTDRVVDRVSM 433