BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0249.0013.p         (82 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_06535878.1| hypothetical protein Salmonellaentericaenteri...    37   1.0  
gb|EGE55388.1| hypothetical protein RHECNPAF_930033 [Rhizobium e...    35   3.5  

>ref|ZP_06535878.1| hypothetical protein Salmonellaentericaenterica_12687 [Salmonella
          enterica subsp. enterica serovar Typhi str. AG3]
          Length = 68

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 30/51 (58%)

Query: 2  RRQIGDVPAFEHHAAGAVLDQADDGAERGRFAGAVAPEQCHHLALADLERD 52
          R Q  +V   E + A  ++ Q  + A++ RFAG   P+Q +HLA  +++RD
Sbjct: 18 RVQAANVRTVETNMAAGLMFQPGNNAQQRRFAGTRRPQQGNHLAGRNIQRD 68


>gb|EGE55388.1| hypothetical protein RHECNPAF_930033 [Rhizobium etli CNPAF512]
          Length = 366

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 35/72 (48%)

Query: 1   MRRQIGDVPAFEHHAAGAVLDQADDGAERGRFAGAVAPEQCHHLALADLERDVEQDMRRA 60
           + RQ+GD+   E  A+      A D  +R RFA A   EQ  HLA+AD E  +  D+  A
Sbjct: 288 LARQVGDIAVAEEDASAGRPVNAADRKKRRRFAAAGRTEQRQHLAVADFELHILDDLGGA 347

Query: 61  VEAVEILYRQLH 72
               EI+    H
Sbjct: 348 EALREIVEEDAH 359