BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0249.0011.p         (151 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08629002.1| transcriptional regulator, MarR family [Brady...   254   4e-66
ref|NP_770469.1| transcriptional regulator [Bradyrhizobium japon...   252   1e-65
ref|YP_001238505.1| MarR family transcriptional regulator [Brady...   227   4e-58
ref|YP_001204213.1| MarR family transcriptional regulator [Brady...   216   9e-55
ref|YP_001525706.1| transcriptional regulator [Azorhizobium caul...   180   8e-44

>ref|ZP_08629002.1| transcriptional regulator, MarR family [Bradyrhizobiaceae bacterium
           SG-6C]
 gb|EGP08361.1| transcriptional regulator, MarR family [Bradyrhizobiaceae bacterium
           SG-6C]
          Length = 167

 Score =  254 bits (648), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 122/149 (81%), Positives = 136/149 (91%)

Query: 3   RSAAQKRSVKATKPGYVLDEQIGFILRQVSQRHAVIFAREIGINLTPTQWAALSKLSEVG 62
           +  A KR+ KA+KP Y+LD+QIGF+LRQV QRHA IFA+EIGINLTPTQWAAL+KL+E G
Sbjct: 19  KPGAPKRNGKASKPLYILDDQIGFVLRQVWQRHATIFAKEIGINLTPTQWAALAKLTETG 78

Query: 63  ACSQNQLGRLTSMDVATIKGVIDRLTARGLTETAPDPDDGRRLLVSLTRAGQQMADKAAP 122
            CSQNQLGRLT+MDVATIKGVIDRLTARGLTET+PDPDDGRRLLVSLTRAGQ MA+KAAP
Sbjct: 79  PCSQNQLGRLTAMDVATIKGVIDRLTARGLTETSPDPDDGRRLLVSLTRAGQAMAEKAAP 138

Query: 123 NALVISRETLAPLDAKERETLIALLGKLR 151
           +AL IS+ETLAPLDAKERET IALL KLR
Sbjct: 139 HALAISKETLAPLDAKERETFIALLSKLR 167


>ref|NP_770469.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49094.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 151

 Score =  252 bits (643), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 123/151 (81%), Positives = 136/151 (90%)

Query: 1   MARSAAQKRSVKATKPGYVLDEQIGFILRQVSQRHAVIFAREIGINLTPTQWAALSKLSE 60
           MARS A K+SVK  KP YVLDEQ+GFILRQV QRH+ IF+R+IG NLTPTQWAALSKL+E
Sbjct: 1   MARSVAAKKSVKPAKPPYVLDEQVGFILRQVWQRHSSIFSRDIGTNLTPTQWAALSKLAE 60

Query: 61  VGACSQNQLGRLTSMDVATIKGVIDRLTARGLTETAPDPDDGRRLLVSLTRAGQQMADKA 120
            G CSQNQLGRLT+MDVATIKGVIDRLTARGLTET+ DP+DGRRLLVSLTRAGQQ+A+K 
Sbjct: 61  TGPCSQNQLGRLTAMDVATIKGVIDRLTARGLTETSQDPEDGRRLLVSLTRAGQQLAEKL 120

Query: 121 APNALVISRETLAPLDAKERETLIALLGKLR 151
           APNAL I+RETLAPLDAKERE L+ALL KLR
Sbjct: 121 APNALAITRETLAPLDAKEREMLMALLSKLR 151


>ref|YP_001238505.1| MarR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gb|ABQ34599.1| transcriptional regulator, MarR family [Bradyrhizobium sp. BTAi1]
          Length = 174

 Score =  227 bits (579), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 111/135 (82%), Positives = 121/135 (89%)

Query: 17  GYVLDEQIGFILRQVSQRHAVIFAREIGINLTPTQWAALSKLSEVGACSQNQLGRLTSMD 76
            YVLD+QIGFILRQV QRH +IFAR+IG NLTPTQWAALSKL E G CSQNQLGRLT+MD
Sbjct: 40  NYVLDDQIGFILRQVWQRHTMIFARDIGSNLTPTQWAALSKLVETGPCSQNQLGRLTAMD 99

Query: 77  VATIKGVIDRLTARGLTETAPDPDDGRRLLVSLTRAGQQMADKAAPNALVISRETLAPLD 136
           VATIKGVIDRLTARGLTET+ DP DGRRLLVSLTRAGQQ+A+K AP AL IS+ETLAPLD
Sbjct: 100 VATIKGVIDRLTARGLTETSADPQDGRRLLVSLTRAGQQLAEKTAPLALAISKETLAPLD 159

Query: 137 AKERETLIALLGKLR 151
           AKERETL+ LL +LR
Sbjct: 160 AKERETLLGLLSRLR 174


>ref|YP_001204213.1| MarR family transcriptional regulator [Bradyrhizobium sp. ORS 278]
 emb|CAL75976.1| putative transcriptional regulatory protein, MarR family
           [Bradyrhizobium sp. ORS 278]
          Length = 171

 Score =  216 bits (550), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 104/126 (82%), Positives = 113/126 (89%)

Query: 17  GYVLDEQIGFILRQVSQRHAVIFAREIGINLTPTQWAALSKLSEVGACSQNQLGRLTSMD 76
            YVLD+QIGFILRQV QRH +IFAR+IG NLTPTQWAA+SKL E G CSQNQLGR T+MD
Sbjct: 37  NYVLDDQIGFILRQVWQRHTMIFARDIGSNLTPTQWAAMSKLVETGPCSQNQLGRFTAMD 96

Query: 77  VATIKGVIDRLTARGLTETAPDPDDGRRLLVSLTRAGQQMADKAAPNALVISRETLAPLD 136
           VATIKGVIDRLTARGLTET+ DP DGRRLLVSLTRAGQQ+A+K AP AL IS+ETLAPLD
Sbjct: 97  VATIKGVIDRLTARGLTETSADPQDGRRLLVSLTRAGQQLAEKTAPLALAISKETLAPLD 156

Query: 137 AKERET 142
           AKERET
Sbjct: 157 AKERET 162


>ref|YP_001525706.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 dbj|BAF88788.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 167

 Score =  180 bits (456), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 90/149 (60%), Positives = 112/149 (75%), Gaps = 1/149 (0%)

Query: 4   SAAQKRSVKA-TKPGYVLDEQIGFILRQVSQRHAVIFAREIGINLTPTQWAALSKLSEVG 62
           +A ++R  KA   P YVLD Q+GF+LRQV QRH VIF  ++G +LT TQWAAL+KL E G
Sbjct: 19  TAVRRRRAKAPADPAYVLDAQVGFLLRQVVQRHTVIFGAKMGEDLTSTQWAALAKLHEKG 78

Query: 63  ACSQNQLGRLTSMDVATIKGVIDRLTARGLTETAPDPDDGRRLLVSLTRAGQQMADKAAP 122
            CSQN LGR+T+MD ATIKGV+DRL  R L ET PDP+DGRRL+V+LT  G  + +K+ P
Sbjct: 79  PCSQNLLGRMTAMDAATIKGVVDRLVKRKLVETRPDPEDGRRLVVALTAEGTALTEKSIP 138

Query: 123 NALVISRETLAPLDAKERETLIALLGKLR 151
            AL I+ ETLAPLDA ER  L++LL +LR
Sbjct: 139 LALDITEETLAPLDATERAQLVSLLERLR 167