BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0249.0005.p (257 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769372.1| cytochrome C [Bradyrhizobium japonicum USDA 110... 379 e-103 ref|YP_001238803.1| putative diheme cytochrome C [Bradyrhizobium... 367 e-100 ref|YP_001204470.1| putative diheme cytochrome C/sulfur oxidizin... 363 1e-98 ref|YP_003693901.1| diheme cytochrome C; sulfur oxidizing protei... 284 8e-75 ref|YP_001789103.1| putative cytochrome c [Leptothrix cholodnii ... 281 6e-74 >ref|NP_769372.1| cytochrome C [Bradyrhizobium japonicum USDA 110] dbj|BAC47997.1| bll2732 [Bradyrhizobium japonicum USDA 110] Length = 277 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 174/237 (73%), Positives = 204/237 (86%) Query: 21 EIPLVQRRSGYSFMSPDSKVMQDEDTANPGMLSVLDGEALWTRKAGTANMACADCHNDAS 80 EI RRSGY+FM PD++ MQD+DTANPGML VLDGEALWT+K G+A ACADCH DA Sbjct: 41 EIAPEARRSGYAFMGPDTRAMQDDDTANPGMLFVLDGEALWTKKTGSAEKACADCHGDAR 100 Query: 81 ASMKGVAAHYPAFDKALQKPVDLEGRINLCRTNHQQASPFAYESRELLALTAYVARQSRG 140 SMKGVAA YPAF+KA+ +P+ L+ RINLCR NHQQA+P YESR+LLAL+A+VA QSRG Sbjct: 101 GSMKGVAARYPAFEKAVGRPITLDQRINLCRANHQQATPLPYESRDLLALSAFVAHQSRG 160 Query: 141 MPITAGDDPELAPFVEHGHALFMQRQGQLNLGCTNCHDDNWDKKLAGSAITQGQPTGYPL 200 + ITAGDDP+L FVE G LFMQR+GQLNL CTNCHDDN+D+ LAG+ ITQ QPTGYPL Sbjct: 161 VAITAGDDPQLKQFVEQGRDLFMQREGQLNLACTNCHDDNFDRHLAGAPITQAQPTGYPL 220 Query: 201 YRLEWQALGSLQRRLRACITGIRAQAYDYGSPELVELELYLMTRARGMPVETPAVRP 257 YRLEWQ LGSL+RRLR+C++G+RAQAYDYG+PELV LELYLM+RARG+P+ETPAVRP Sbjct: 221 YRLEWQTLGSLERRLRSCMSGVRAQAYDYGAPELVALELYLMSRARGLPMETPAVRP 277 >ref|YP_001238803.1| putative diheme cytochrome C [Bradyrhizobium sp. BTAi1] gb|ABQ34897.1| diheme cytochrome SoxA (sulfur oxidation) [Bradyrhizobium sp. BTAi1] Length = 258 Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust. Identities = 172/237 (72%), Positives = 191/237 (80%) Query: 21 EIPLVQRRSGYSFMSPDSKVMQDEDTANPGMLSVLDGEALWTRKAGTANMACADCHNDAS 80 EI RRSGY FMS D+K MQD++TANP MLSVLDGE LW KAG A +C+DCH Sbjct: 22 EIGESARRSGYEFMSADTKAMQDDNTANPAMLSVLDGETLWRTKAGAAGKSCSDCHGAVD 81 Query: 81 ASMKGVAAHYPAFDKALQKPVDLEGRINLCRTNHQQASPFAYESRELLALTAYVARQSRG 140 SMKGVAA YPAF+ A PVDL R+NLCR HQ+A PFA ESRELLALTA +ARQSRG Sbjct: 82 VSMKGVAARYPAFNAASGAPVDLGQRVNLCRRQHQEAEPFAPESRELLALTALIARQSRG 141 Query: 141 MPITAGDDPELAPFVEHGHALFMQRQGQLNLGCTNCHDDNWDKKLAGSAITQGQPTGYPL 200 MPITAGDDP LAP V HG ALFMQRQGQLNL CTNCHDDNWDK LAGSAITQ QPTGYP+ Sbjct: 142 MPITAGDDPRLAPSVAHGRALFMQRQGQLNLACTNCHDDNWDKHLAGSAITQAQPTGYPI 201 Query: 201 YRLEWQALGSLQRRLRACITGIRAQAYDYGSPELVELELYLMTRARGMPVETPAVRP 257 YRLEWQ +GSLQRRLR C+TG+RAQAYD+ +P+++ LELYL +RA GM VE PAVRP Sbjct: 202 YRLEWQGMGSLQRRLRGCMTGVRAQAYDFDAPDMIALELYLTSRAHGMAVEAPAVRP 258 >ref|YP_001204470.1| putative diheme cytochrome C/sulfur oxidizing protein soxA [Bradyrhizobium sp. ORS 278] emb|CAL76233.1| putative diheme cytochrome C; sulfur oxidizing protein soxA [Bradyrhizobium sp. ORS 278] Length = 258 Score = 363 bits (933), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 167/240 (69%), Positives = 190/240 (79%) Query: 18 LATEIPLVQRRSGYSFMSPDSKVMQDEDTANPGMLSVLDGEALWTRKAGTANMACADCHN 77 LA EI RRSGY FMS DSK MQD+DTANP MLSVLDGE LW+ K+G AN +C DCH Sbjct: 19 LAGEIAPSDRRSGYEFMSSDSKAMQDDDTANPAMLSVLDGETLWSTKSGAANKSCNDCHG 78 Query: 78 DASASMKGVAAHYPAFDKALQKPVDLEGRINLCRTNHQQASPFAYESRELLALTAYVARQ 137 D + MKG AA YPAFD PVDL R+NLCR HQQA PFA ESRELLALTA +A+Q Sbjct: 79 DVTVGMKGTAARYPAFDATSATPVDLGQRVNLCRRQHQQADPFAPESRELLALTALIAKQ 138 Query: 138 SRGMPITAGDDPELAPFVEHGHALFMQRQGQLNLGCTNCHDDNWDKKLAGSAITQGQPTG 197 SRGMPI AGDDP LA V G LF QRQGQLNL C NCHDDNWD+ LAGS+ITQGQPTG Sbjct: 139 SRGMPINAGDDPRLASSVARGRELFFQRQGQLNLACANCHDDNWDRHLAGSSITQGQPTG 198 Query: 198 YPLYRLEWQALGSLQRRLRACITGIRAQAYDYGSPELVELELYLMTRARGMPVETPAVRP 257 YP+YRLEWQ +GSLQRRLR C+TG+RAQA+D+ +P+++ LELYLM+RARGM ++ PAVRP Sbjct: 199 YPIYRLEWQGMGSLQRRLRGCMTGVRAQAFDFDAPDMIALELYLMSRARGMKIDAPAVRP 258 >ref|YP_003693901.1| diheme cytochrome C; sulfur oxidizing protein SoxA [Starkeya novella DSM 506] gb|ADH89282.1| putative diheme cytochrome c; sulfur oxidizing protein SoxA [Starkeya novella DSM 506] Length = 256 Score = 284 bits (727), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 133/232 (57%), Positives = 163/232 (70%) Query: 26 QRRSGYSFMSPDSKVMQDEDTANPGMLSVLDGEALWTRKAGTANMACADCHNDASASMKG 85 +RRSG FMS ++ +Q +DTANPGML VL GE LW AG + +CA CH +A+ASM+G Sbjct: 25 ERRSGTDFMSAQTRAVQADDTANPGMLWVLQGETLWNEPAGASGRSCASCHGEAAASMRG 84 Query: 86 VAAHYPAFDKALQKPVDLEGRINLCRTNHQQASPFAYESRELLALTAYVARQSRGMPITA 145 VAA YPAFD A P+DL G+I+ CRT QQA ES + L L AYV QSRGMPI Sbjct: 85 VAARYPAFDAASGAPIDLAGKIDQCRTQRQQAETLPRESEDALGLAAYVGHQSRGMPIAP 144 Query: 146 GDDPELAPFVEHGHALFMQRQGQLNLGCTNCHDDNWDKKLAGSAITQGQPTGYPLYRLEW 205 +DP L G LF R GQL+L C++CHD W +L GSA+TQ PTGYP+YRLEW Sbjct: 145 PNDPRLDAARAEGKRLFETRMGQLDLACSSCHDAYWRGRLGGSAVTQAHPTGYPIYRLEW 204 Query: 206 QALGSLQRRLRACITGIRAQAYDYGSPELVELELYLMTRARGMPVETPAVRP 257 QA+GSLQRR+R C+ G+RA+ + YG+ E + LELYL +RA GMPVETPAVRP Sbjct: 205 QAVGSLQRRMRGCMVGVRAEPFAYGAAEFIALELYLNSRAAGMPVETPAVRP 256 >ref|YP_001789103.1| putative cytochrome c [Leptothrix cholodnii SP-6] gb|ACB32338.1| putative cytochrome c [Leptothrix cholodnii SP-6] Length = 261 Score = 281 bits (719), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 134/231 (58%), Positives = 164/231 (70%) Query: 27 RRSGYSFMSPDSKVMQDEDTANPGMLSVLDGEALWTRKAGTANMACADCHNDASASMKGV 86 RRSG+ M ++ MQ +DT NPG+L V DGEALW++ G A +CA CH + + SM+GV Sbjct: 31 RRSGFDDMGAQTQAMQRDDTLNPGLLWVQDGEALWSQPVGEAAKSCASCHGERATSMRGV 90 Query: 87 AAHYPAFDKALQKPVDLEGRINLCRTNHQQASPFAYESRELLALTAYVARQSRGMPITAG 146 AA YPAFD L +PVDL RINLCR HQQA A ES+ LLAL + +A SRG+P+ + Sbjct: 91 AARYPAFDTLLGRPVDLAQRINLCRQRHQQAPTLAAESQPLLALESALAHASRGLPLASA 150 Query: 147 DDPELAPFVEHGHALFMQRQGQLNLGCTNCHDDNWDKKLAGSAITQGQPTGYPLYRLEWQ 206 DDP LAPF + G AL+ QR GQ++L C CHD +L GS I QG GYP YRLEWQ Sbjct: 151 DDPRLAPFRDRGEALYRQRIGQIDLSCAQCHDQRAGLRLGGSRIPQGHVNGYPTYRLEWQ 210 Query: 207 ALGSLQRRLRACITGIRAQAYDYGSPELVELELYLMTRARGMPVETPAVRP 257 +GSLQRRLR C+TG+RAQ D+G+P LVELELYL R+RG+PVE PAVRP Sbjct: 211 GIGSLQRRLRNCLTGVRAQVPDWGAPALVELELYLAWRSRGLPVEAPAVRP 261