BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0248.0057.p (238 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001205043.1| putative outer-membrane immunogenic protein ... 340 1e-91 ref|NP_948710.1| putative outer membrane protein [Rhodopseudomon... 337 1e-90 ref|YP_001992826.1| porin [Rhodopseudomonas palustris TIE-1] >gi... 335 4e-90 ref|YP_485815.1| putative outer membrane protein [Rhodopseudomon... 332 3e-89 ref|YP_532964.1| OmpA-like transmembrane region [Rhodopseudomona... 330 1e-88 >ref|YP_001205043.1| putative outer-membrane immunogenic protein [Bradyrhizobium sp. ORS 278] emb|CAL76806.1| conserved hypothetical protein; putative outer-membrane immunogenic protein precursor; putative secreted protein [Bradyrhizobium sp. ORS 278] Length = 237 Score = 340 bits (872), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 172/239 (71%), Positives = 194/239 (81%), Gaps = 3/239 (1%) Query: 1 MKKFLFGTVALAALAGPAFAADMPARTYTKAPPPYTAPAVVYNWTGFYIGGHVGGAFTDG 60 MK+ VAL ALA PAFAADMPARTYTKAPP T P +Y+WTGFYIGGH+GGAF G Sbjct: 1 MKRVFLSAVALTALAVPAFAADMPARTYTKAPP-MTPPQAIYDWTGFYIGGHLGGAFAGG 59 Query: 61 NNLMGSDARFMGGVQGGFDYQFAPNWVMGAEAQYSWLPSSSNNGVLLPGGTLVTGN-TDQ 119 N L G++ARF+GGVQGGFDYQFAPNWV+G EAQYSW+ ++ N PG T+VT +Q Sbjct: 60 NGLEGNNARFLGGVQGGFDYQFAPNWVLGIEAQYSWMDRNTTN-FGFPGATVVTSTGANQ 118 Query: 120 IGSVTGRLGYTWGPALLYAKGGYAWRDNNNITASVGGVPASFTTDGGHKDGYTVGAGLEY 179 +GSVTGRLGYTWGPALLYAKGGYAWRD N + +V GVPA FTT G KDGYTVGAGLEY Sbjct: 119 LGSVTGRLGYTWGPALLYAKGGYAWRDGNGLGVNVAGVPAGFTTSGNAKDGYTVGAGLEY 178 Query: 180 MFAPNWSAKAEYQYYNFGKTNFTSGPADLVGTSFRNDEHTVKLGVNYRFGWGGPVGSRY 238 MFAPNWSAKAEYQYYNFG T FT GPA +VG+ F N++HTVK+GVNYRFGWGGPV S+Y Sbjct: 179 MFAPNWSAKAEYQYYNFGNTTFTGGPAPVVGSRFNNEDHTVKVGVNYRFGWGGPVASKY 237 >ref|NP_948710.1| putative outer membrane protein [Rhodopseudomonas palustris CGA009] emb|CAE28812.1| putative outer membrane protein [Rhodopseudomonas palustris CGA009] Length = 240 Score = 337 bits (863), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 165/238 (69%), Positives = 190/238 (79%), Gaps = 1/238 (0%) Query: 1 MKKFLFGTVALAALAGPAFAADMPARTYTKAPPPYTAPAVVYNWTGFYIGGHVGGAFTDG 60 MK L G A+ AL+ PAFAAD+P R YTKA P YTAP VVYNWTGFY+GGHVGGA+ Sbjct: 4 MKNTLLGAAAVIALSAPAFAADLPPRPYTKAAPAYTAPEVVYNWTGFYVGGHVGGAWAGD 63 Query: 61 NNLMGSDARFMGGVQGGFDYQFAPNWVMGAEAQYSWLPSSSNNGVLLPGGTLVTGNTDQI 120 NN+ G+ RF GGVQGG DYQFA NWV+G EAQYSW+ SS+N GV+ PGG+ T +T + Sbjct: 64 NNITGNSGRFFGGVQGGADYQFATNWVIGIEAQYSWM-SSNNTGVIFPGGSTATEDTRGL 122 Query: 121 GSVTGRLGYTWGPALLYAKGGYAWRDNNNITASVGGVPASFTTDGGHKDGYTVGAGLEYM 180 GSVTGRLGY WGP L+YAKGGYAWRD++ AS+GGVP+ +TT G DGYTVGAGLEYM Sbjct: 123 GSVTGRLGYAWGPTLVYAKGGYAWRDSDLSVASLGGVPSGYTTSGSRNDGYTVGAGLEYM 182 Query: 181 FAPNWSAKAEYQYYNFGKTNFTSGPADLVGTSFRNDEHTVKLGVNYRFGWGGPVGSRY 238 FAP+WSAK EYQYY FG T FT GPAD+VGTSFRNDEHTVK G+NYRFGWGGP ++Y Sbjct: 183 FAPSWSAKVEYQYYKFGDTTFTGGPADVVGTSFRNDEHTVKAGINYRFGWGGPAVAKY 240 >ref|YP_001992826.1| porin [Rhodopseudomonas palustris TIE-1] gb|ACF02351.1| porin [Rhodopseudomonas palustris TIE-1] Length = 240 Score = 335 bits (858), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 164/238 (68%), Positives = 189/238 (79%), Gaps = 1/238 (0%) Query: 1 MKKFLFGTVALAALAGPAFAADMPARTYTKAPPPYTAPAVVYNWTGFYIGGHVGGAFTDG 60 MK L G A+ AL+ PAFAAD+P R YTKA P YTAP VVYNWTGFY+GGHVGGA+ Sbjct: 4 MKNTLLGAAAVIALSAPAFAADLPPRPYTKAAPAYTAPEVVYNWTGFYVGGHVGGAWAGD 63 Query: 61 NNLMGSDARFMGGVQGGFDYQFAPNWVMGAEAQYSWLPSSSNNGVLLPGGTLVTGNTDQI 120 NN+ G+ RF GGVQGG DYQFA NWV+G EAQYSW+ SS+N GV+ PGG+ T +T + Sbjct: 64 NNITGNSGRFFGGVQGGADYQFATNWVIGIEAQYSWM-SSNNTGVIFPGGSTATEDTRGL 122 Query: 121 GSVTGRLGYTWGPALLYAKGGYAWRDNNNITASVGGVPASFTTDGGHKDGYTVGAGLEYM 180 GSVTGRLGY WGP L+YAKGGYAWRD++ AS+GGVP+ +T G DGYTVGAGLEYM Sbjct: 123 GSVTGRLGYAWGPTLVYAKGGYAWRDSDLSVASLGGVPSGYTASGSRNDGYTVGAGLEYM 182 Query: 181 FAPNWSAKAEYQYYNFGKTNFTSGPADLVGTSFRNDEHTVKLGVNYRFGWGGPVGSRY 238 FAP+WSAK EYQYY FG T FT GPAD+VGTSFRNDEHTVK G+NYRFGWGGP ++Y Sbjct: 183 FAPSWSAKVEYQYYKFGDTTFTGGPADVVGTSFRNDEHTVKAGINYRFGWGGPAVAKY 240 >ref|YP_485815.1| putative outer membrane protein [Rhodopseudomonas palustris HaA2] gb|ABD06904.1| putative outer membrane protein [Rhodopseudomonas palustris HaA2] Length = 237 Score = 332 bits (851), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 167/239 (69%), Positives = 192/239 (80%), Gaps = 3/239 (1%) Query: 1 MKKFLFGTVALAALAGPAFAADM-PARTYTKAPPPYTAPAVVYNWTGFYIGGHVGGAFTD 59 MKKFL VAL AL PAFAAD+ P YTKAPP TAP VVYNWTGFYIGG+VGGAF Sbjct: 1 MKKFLLSAVALGALGAPAFAADLGPRPAYTKAPPA-TAPTVVYNWTGFYIGGNVGGAFAG 59 Query: 60 GNNLMGSDARFMGGVQGGFDYQFAPNWVMGAEAQYSWLPSSSNNGVLLPGGTLVTGNTDQ 119 NNL RFMGGVQGGFDYQFAPNWV+G EAQYSW+ +S+N GV+ P G+ T NT Sbjct: 60 SNNLQSDSGRFMGGVQGGFDYQFAPNWVVGLEAQYSWM-ASNNTGVIFPAGSTATENTRG 118 Query: 120 IGSVTGRLGYTWGPALLYAKGGYAWRDNNNITASVGGVPASFTTDGGHKDGYTVGAGLEY 179 +GSVTGR+GYTWGPALLYAKGGYA+RD++ A+ GG+PA+++T G DGYTVGAGLEY Sbjct: 119 LGSVTGRIGYTWGPALLYAKGGYAFRDSSLGVATAGGIPAAYSTSGSRNDGYTVGAGLEY 178 Query: 180 MFAPNWSAKAEYQYYNFGKTNFTSGPADLVGTSFRNDEHTVKLGVNYRFGWGGPVGSRY 238 MFAP+WSAK EYQYY F T FTSGPAD+VGT+FRND+HTVK G+NYRFGWGGP ++Y Sbjct: 179 MFAPSWSAKVEYQYYKFDNTAFTSGPADMVGTTFRNDDHTVKAGINYRFGWGGPAVAKY 237 >ref|YP_532964.1| OmpA-like transmembrane region [Rhodopseudomonas palustris BisB18] gb|ABD88645.1| OmpA-like transmembrane region [Rhodopseudomonas palustris BisB18] Length = 236 Score = 330 bits (845), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 167/238 (70%), Positives = 190/238 (79%), Gaps = 2/238 (0%) Query: 1 MKKFLFGTVALAALAGPAFAADMPARTYTKAPPPYTAPAVVYNWTGFYIGGHVGGAFTDG 60 M+K L GT AL LA PAFAAD+PA TYTKAP YTAP VVYNWTGFYIGGHVGGAF Sbjct: 1 MRKLLLGTAALMVLAAPAFAADLPAPTYTKAPA-YTAPEVVYNWTGFYIGGHVGGAFAGD 59 Query: 61 NNLMGSDARFMGGVQGGFDYQFAPNWVMGAEAQYSWLPSSSNNGVLLPGGTLVTGNTDQI 120 NN+ G+D +F+GGVQ G DYQF NWV+G EAQYSWLPS+ N G+ PGG+LVT + + Sbjct: 60 NNISGNDGQFLGGVQIGADYQFTRNWVVGLEAQYSWLPSNDNGGLAFPGGSLVTQDNRGL 119 Query: 121 GSVTGRLGYTWGPALLYAKGGYAWRDNNNITASVGGVPASFTTDGGHKDGYTVGAGLEYM 180 GSVTGRLGYTWGPALLYAKGGYA+RD +++ S GV FTT G H+DGYTVGAGLEYM Sbjct: 120 GSVTGRLGYTWGPALLYAKGGYAFRD-SSLDLSNTGVGVPFTTSGNHRDGYTVGAGLEYM 178 Query: 181 FAPNWSAKAEYQYYNFGKTNFTSGPADLVGTSFRNDEHTVKLGVNYRFGWGGPVGSRY 238 FAPNWSAK EYQYY+FG T FT GP D++G S RNDEHTVK G+NYRFGWGGP ++Y Sbjct: 179 FAPNWSAKVEYQYYDFGNTTFTGGPPDVLGASVRNDEHTVKAGLNYRFGWGGPAVAKY 236