BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0248.0054.p (182 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772152.1| hypothetical protein blr5512 [Bradyrhizobium ja... 230 7e-59 ref|YP_001241071.1| hypothetical protein BBta_5172 [Bradyrhizobi... 212 2e-53 ref|YP_781280.1| TPR repeat-containing protein [Rhodopseudomonas... 211 3e-53 ref|NP_774551.1| hypothetical protein bll7911 [Bradyrhizobium ja... 206 1e-51 ref|ZP_08630454.1| hypothetical protein CSIRO_3563 [Bradyrhizobi... 204 3e-51 >ref|NP_772152.1| hypothetical protein blr5512 [Bradyrhizobium japonicum USDA 110] dbj|BAC50777.1| blr5512 [Bradyrhizobium japonicum USDA 110] Length = 180 Score = 230 bits (586), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 124/184 (67%), Positives = 145/184 (78%), Gaps = 6/184 (3%) Query: 1 MSRKTKFLGLAVLSMTLASGPVI-SAYAAGSDNPS-PPASDSGSSKGKKAKKDKSSAIDD 58 M + + L +++MTLA+GPV+ SAYAAGSD PS PP SD+ + KGKK S D Sbjct: 1 MRKLSMLLLPGLVAMTLAAGPVLTSAYAAGSDEPSSPPKSDTSTKKGKKKSSSVS----D 56 Query: 59 QKFLAGYRAAYTTIYDKHDYTAAIGQLKALGQDDRADVANLIGYSYRKLGDYKVSQIWYE 118 KFLA YR AYTTIYD HDYT AI QLK+L +D+ ADVANLIGYSYRKLGDY+ S+++YE Sbjct: 57 PKFLAAYRTAYTTIYDNHDYTGAIDQLKSLKRDEVADVANLIGYSYRKLGDYQSSKVYYE 116 Query: 119 RALKADPAHVRTWQYYGLWQVEQGNRDQAQYHLNRIAQLAGTNSDEYRSLAAALEKPPGT 178 ALK DP HVRTWQYYGLWQ+EQGNR+QAQYHLN+IA LAGT+S EYRSLAAAL+KP G Sbjct: 117 LALKDDPNHVRTWQYYGLWQLEQGNREQAQYHLNKIASLAGTDSSEYRSLAAALDKPTGA 176 Query: 179 GLVY 182 LVY Sbjct: 177 TLVY 180 >ref|YP_001241071.1| hypothetical protein BBta_5172 [Bradyrhizobium sp. BTAi1] gb|ABQ37165.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 181 Score = 212 bits (540), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 118/175 (67%), Positives = 140/175 (80%), Gaps = 6/175 (3%) Query: 10 LAVLSMTLASGPVI--SAYAAGSDNPSPPASDSGSSKGKKAKKDKSSAIDDQKFLAGYRA 67 LA+ SM +ASGP++ AYAAGSD S +S K KKDKSS+I+D KFLA YR Sbjct: 11 LALFSMAVASGPLLLSKAYAAGSDT----PSSPPASDSSKKKKDKSSSIEDPKFLAAYRT 66 Query: 68 AYTTIYDKHDYTAAIGQLKALGQDDRADVANLIGYSYRKLGDYKVSQIWYERALKADPAH 127 AYT+IYD+ DY AI QLKAL ++D ADVANLIGYSYRKLG+Y+ S+ +YE+AL DP H Sbjct: 67 AYTSIYDRGDYATAIEQLKALNREDVADVANLIGYSYRKLGNYQASKQYYEQALADDPNH 126 Query: 128 VRTWQYYGLWQVEQGNRDQAQYHLNRIAQLAGTNSDEYRSLAAALEKPPGTGLVY 182 VRTWQYYGLWQ+EQGNR+QA+YHL+++AQLAGTNS EYRSLA ALEK PGTGLVY Sbjct: 127 VRTWQYYGLWQLEQGNREQARYHLDKVAQLAGTNSAEYRSLADALEKQPGTGLVY 181 >ref|YP_781280.1| TPR repeat-containing protein [Rhodopseudomonas palustris BisA53] gb|ABJ06300.1| Tetratricopeptide TPR_2 repeat protein [Rhodopseudomonas palustris BisA53] Length = 186 Score = 211 bits (538), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 112/186 (60%), Positives = 136/186 (73%), Gaps = 18/186 (9%) Query: 11 AVLSMTLASGPVISAYA--------------AGSDNPSPPASDSGSSKGKKAKKDKSSAI 56 AV +TLAS +++A+A AG D PSPPASDSG+ KK + Sbjct: 5 AVGLITLASFSLVAAFATVPMGVPSLGQALAAGGDEPSPPASDSGTKGKKKKSSQR---- 60 Query: 57 DDQKFLAGYRAAYTTIYDKHDYTAAIGQLKALGQDDRADVANLIGYSYRKLGDYKVSQIW 116 DD +F+ GYR+AY IYD+ +Y++AI QLKAL DDRADVANLIGYSYRKLG+Y++SQ W Sbjct: 61 DDDRFIQGYRSAYAAIYDRAEYSSAIDQLKALEADDRADVANLIGYSYRKLGNYQLSQAW 120 Query: 117 YERALKADPAHVRTWQYYGLWQVEQGNRDQAQYHLNRIAQLAGTNSDEYRSLAAALEKPP 176 YERALKADP HVRTWQYYGLWQ+EQGNR+QA+YHL RI L GT+ D+YRSLAAALE+P Sbjct: 121 YERALKADPDHVRTWQYYGLWQLEQGNREQAEYHLGRIRALCGTDCDDYRSLAAALEQPS 180 Query: 177 GTGLVY 182 +G Y Sbjct: 181 SSGPAY 186 >ref|NP_774551.1| hypothetical protein bll7911 [Bradyrhizobium japonicum USDA 110] dbj|BAC53176.1| bll7911 [Bradyrhizobium japonicum USDA 110] Length = 204 Score = 206 bits (524), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 99/165 (60%), Positives = 121/165 (73%) Query: 18 ASGPVISAYAAGSDNPSPPASDSGSSKGKKAKKDKSSAIDDQKFLAGYRAAYTTIYDKHD 77 ++ P AY+ P+ P + K K+ S+I D F AGYR AY TIY+++D Sbjct: 40 STDPYAGAYSDQKPQPTYPKRPGTKATQKGKKQGNQSSIGDPAFAAGYRVAYDTIYERND 99 Query: 78 YTAAIGQLKALGQDDRADVANLIGYSYRKLGDYKVSQIWYERALKADPAHVRTWQYYGLW 137 Y AI QLK+LG DD +VANLIGYSYRKLGDY+ SQ+WYERAL+ADP HV+TWQYYGLW Sbjct: 100 YATAIAQLKSLGHDDHPNVANLIGYSYRKLGDYEQSQVWYERALRADPNHVQTWQYYGLW 159 Query: 138 QVEQGNRDQAQYHLNRIAQLAGTNSDEYRSLAAALEKPPGTGLVY 182 Q+E+GNR+QA YHL RIA + GT+ DEYRSLAAAL+KP GT LVY Sbjct: 160 QLERGNREQALYHLGRIASICGTDCDEYRSLAAALDKPSGTALVY 204 >ref|ZP_08630454.1| hypothetical protein CSIRO_3563 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06833.1| hypothetical protein CSIRO_3563 [Bradyrhizobiaceae bacterium SG-6C] Length = 180 Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 111/175 (63%), Positives = 136/175 (77%), Gaps = 5/175 (2%) Query: 1 MSRKT-KFLGLAVL-SMTLASGPVISAYAAGSDNPSPP-ASDSGSSKGKKAKKDKSSAID 57 MS T + + LA+L S LA+ V+ A A SD PSPP ASD+ S K K +K S++D Sbjct: 1 MSNLTIRQMSLALLVSACLAAPSVVQA--APSDTPSPPPASDTKSQPKDKKKGEKKSSLD 58 Query: 58 DQKFLAGYRAAYTTIYDKHDYTAAIGQLKALGQDDRADVANLIGYSYRKLGDYKVSQIWY 117 FL GYR+AY TIY++ +Y AAI QLKALGQDDRADVANLIGYSYRKLG+Y+++ +WY Sbjct: 59 SPAFLQGYRSAYATIYERGEYAAAIDQLKALGQDDRADVANLIGYSYRKLGNYQLASVWY 118 Query: 118 ERALKADPAHVRTWQYYGLWQVEQGNRDQAQYHLNRIAQLAGTNSDEYRSLAAAL 172 ERALKADP HVRTWQYYGLWQVEQGNR+QA++HL +I +AG +S EY+SLAAAL Sbjct: 119 ERALKADPNHVRTWQYYGLWQVEQGNREQARHHLAKIEAIAGRDSSEYQSLAAAL 173