BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0248.0051.p         (104 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_768848.1| hypothetical protein bll2208 [Bradyrhizobium ja...   135   2e-30
ref|YP_001220464.1| hypothetical protein BBta_p0116 [Bradyrhizob...   121   4e-26
ref|ZP_07025773.1| efflux transporter, RND family, MFP subunit [...   107   5e-22
ref|YP_001203640.1| putative periplasmic copper binding protein ...   105   2e-21
ref|YP_571388.1| hypothetical protein RPD_4270 [Rhodopseudomonas...   105   3e-21

>ref|NP_768848.1| hypothetical protein bll2208 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC47473.1| bll2208 [Bradyrhizobium japonicum USDA 110]
          Length = 104

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/82 (80%), Positives = 72/82 (87%)

Query: 23  WGAAFAQGADIDGEVKKIDEGAGKITLKHGPARSLGMDEPMTMVYRVKDPALLKQVRVGD 82
           +GAA A GA I GEVKKIDE AGKITLKHGPA+SLGMDEPMTMVYRVKDPALLKQV+VGD
Sbjct: 23  FGAAAAPGASISGEVKKIDESAGKITLKHGPAKSLGMDEPMTMVYRVKDPALLKQVKVGD 82

Query: 83  KVRFEAKEGDGGYTVTAIQKAK 104
           KV FEA+E   GYTVT ++KAK
Sbjct: 83  KVTFEAEEAASGYTVTKMEKAK 104


>ref|YP_001220464.1| hypothetical protein BBta_p0116 [Bradyrhizobium sp. BTAi1]
 gb|ABQ39792.1| hypothetical protein BBta_p0116 [Bradyrhizobium sp. BTAi1]
          Length = 97

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 57/73 (78%), Positives = 66/73 (90%)

Query: 32  DIDGEVKKIDEGAGKITLKHGPARSLGMDEPMTMVYRVKDPALLKQVRVGDKVRFEAKEG 91
           DI+GEVKKID  AGKITLKHGPA+SLGMDE MTMVYRVKDPA+L+QV+VGDKV+FEA+  
Sbjct: 25  DINGEVKKIDASAGKITLKHGPAKSLGMDEGMTMVYRVKDPAMLQQVKVGDKVKFEAENT 84

Query: 92  DGGYTVTAIQKAK 104
           DGG TVT +QK+K
Sbjct: 85  DGGVTVTKLQKSK 97


>ref|ZP_07025773.1| efflux transporter, RND family, MFP subunit [Afipia sp. 1NLS2]
 gb|EFI52915.1| efflux transporter, RND family, MFP subunit [Afipia sp. 1NLS2]
          Length = 101

 Score =  107 bits (267), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 71/96 (73%), Gaps = 3/96 (3%)

Query: 10  AASLALALALSAPWGAAFAQGADIDGEVKKIDEGAGKITLKHGPARSLGMDEP-MTMVYR 68
           A  LA++ ALS+   A  AQ     GEVKKIDE AGKITLKHGP ++L MDE  MTMV+R
Sbjct: 8   AGILAISFALSS--AAVMAQADMAKGEVKKIDESAGKITLKHGPIKNLDMDEDGMTMVFR 65

Query: 69  VKDPALLKQVRVGDKVRFEAKEGDGGYTVTAIQKAK 104
           V+DPA+LKQV+VGDKV+F+A+    G TVT I+K K
Sbjct: 66  VQDPAMLKQVKVGDKVQFKAERATAGITVTKIEKQK 101


>ref|YP_001203640.1| putative periplasmic copper binding protein [Bradyrhizobium sp. ORS
           278]
 emb|CAL75403.1| putative periplasmic copper binding protein [Bradyrhizobium sp. ORS
           278]
          Length = 91

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/70 (72%), Positives = 58/70 (82%)

Query: 35  GEVKKIDEGAGKITLKHGPARSLGMDEPMTMVYRVKDPALLKQVRVGDKVRFEAKEGDGG 94
           G+VKKIDE  GKITL HGPA+SLGMDE MTMVYRVKD A+LK ++ GDKVRFEA+E   G
Sbjct: 22  GDVKKIDEAQGKITLHHGPAKSLGMDEAMTMVYRVKDAAMLKGLKAGDKVRFEAQEDAAG 81

Query: 95  YTVTAIQKAK 104
           YTVT I+K K
Sbjct: 82  YTVTRIEKGK 91


>ref|YP_571388.1| hypothetical protein RPD_4270 [Rhodopseudomonas palustris BisB5]
 gb|ABE41487.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 99

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/81 (61%), Positives = 62/81 (76%)

Query: 24  GAAFAQGADIDGEVKKIDEGAGKITLKHGPARSLGMDEPMTMVYRVKDPALLKQVRVGDK 83
            A  AQ A + GEVKK+DE A KITLKH P +SLGMDE MTMV+RV+DPA+LKQV+ GDK
Sbjct: 19  SAVLAQDAMVKGEVKKVDEAAKKITLKHDPIKSLGMDEGMTMVFRVQDPAMLKQVKAGDK 78

Query: 84  VRFEAKEGDGGYTVTAIQKAK 104
           V+F A+ G  G  +T I+K+K
Sbjct: 79  VQFTAERGSDGIAITKIEKSK 99