BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0248.0046.p (270 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_947182.1| methylmalonyl-CoA mutase [Rhodopseudomonas palu... 243 2e-62 ref|YP_531640.1| methylmalonyl-CoA mutase [Rhodopseudomonas palu... 238 1e-60 ref|YP_004109988.1| methylmalonyl-CoA mutase [Rhodopseudomonas p... 234 9e-60 ref|ZP_08629241.1| methylmalonyl-CoA mutase [Bradyrhizobiaceae b... 226 4e-57 ref|YP_569065.1| methylmalonyl-CoA mutase [Rhodopseudomonas palu... 221 8e-56 >ref|NP_947182.1| methylmalonyl-CoA mutase [Rhodopseudomonas palustris CGA009] ref|YP_001991039.1| methylmalonyl-CoA mutase [Rhodopseudomonas palustris TIE-1] emb|CAE27278.1| possible methylmalonyl-CoA small subunit [Rhodopseudomonas palustris CGA009] gb|ACF00564.1| Methylmalonyl-CoA mutase [Rhodopseudomonas palustris TIE-1] Length = 623 Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 122/223 (54%), Positives = 156/223 (69%), Gaps = 1/223 (0%) Query: 1 MTTSTDDLALASDFRPATYDDWRKLVDGVLKGAPFEKLVGKTYDGLKIDPIYRRATNASP 60 M+++ +L LA+DF PA Y+DWRKLVDGVLKGAPFEKL+ K+YDG++IDPIY RA +A+P Sbjct: 1 MSSANQELRLAADFAPAGYEDWRKLVDGVLKGAPFEKLISKSYDGIQIDPIYVRARDAAP 60 Query: 61 LAGRAAAAPWRILQRVDHPDAAQANAQALQDLENGATGLEFEFAGGPGARGFGLADVSKK 120 +AGRA AAPWRI+QRVDHP+ +AN QALQDLENGATGL FAG GARGFGL +++ Sbjct: 61 IAGRAPAAPWRIMQRVDHPEPKEANKQALQDLENGATGLTLVFAGSVGARGFGL-PATQE 119 Query: 121 TLARACGGIHLDAGIMIALNPVIGRENAGETFADMVEARKLDPAKLDLHFNYQALSTMAV 180 +A+ G+HLDAGI I L + AD++++R DPA D+ F L AV Sbjct: 120 AIAQVLEGVHLDAGIAIELQFPPQSCDVVRHLADLIKSRGTDPAACDIRFGIDPLGARAV 179 Query: 181 RGAAAIAWPNYEKSFGQVVNGLIKRGFKGPFVLADGRPVAVAG 223 +G++A W K G V GL GFKGPF++ADGR + AG Sbjct: 180 QGSSATDWSEIAKGLGDVAAGLASTGFKGPFLVADGRVIHDAG 222 >ref|YP_531640.1| methylmalonyl-CoA mutase [Rhodopseudomonas palustris BisB18] gb|ABD87321.1| Methylmalonyl-CoA mutase [Rhodopseudomonas palustris BisB18] Length = 621 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 124/223 (55%), Positives = 152/223 (68%), Gaps = 1/223 (0%) Query: 1 MTTSTDDLALASDFRPATYDDWRKLVDGVLKGAPFEKLVGKTYDGLKIDPIYRRATNASP 60 M T+TDDL LA+DF PATYDDWRKLVDGVLKGAPFEKLVGKTYDGLKIDP+Y RA +A+P Sbjct: 1 MPTTTDDLRLAADFAPATYDDWRKLVDGVLKGAPFEKLVGKTYDGLKIDPLYPRAQDATP 60 Query: 61 LAGRAAAAPWRILQRVDHPDAAQANAQALQDLENGATGLEFEFAGGPGARGFGLADVSKK 120 +AGRAAAAPW+I+QR+DHPDAA+AN QAL DL NGATGL F G GARGFGL ++ Sbjct: 61 IAGRAAAAPWQIMQRIDHPDAAKANKQALDDLANGATGLTLVFEGANGARGFGLP-ATQD 119 Query: 121 TLARACGGIHLDAGIMIALNPVIGRENAGETFADMVEARKLDPAKLDLHFNYQALSTMAV 180 ++A G++LDAGI + L A A+ ++A DPA ++ F + AV Sbjct: 120 SIATLLEGVYLDAGIAVELQVGPQARMAAIYLAEHIKAAGTDPATCEIRFGLDPIGACAV 179 Query: 181 RGAAAIAWPNYEKSFGQVVNGLIKRGFKGPFVLADGRPVAVAG 223 G +A W +F + L GFKGPF +ADGR + AG Sbjct: 180 WGCSAYNWWEIAPAFTDAIKKLTDAGFKGPFAVADGRVIHDAG 222 >ref|YP_004109988.1| methylmalonyl-CoA mutase [Rhodopseudomonas palustris DX-1] gb|ADU45255.1| Methylmalonyl-CoA mutase [Rhodopseudomonas palustris DX-1] Length = 623 Score = 234 bits (597), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 118/223 (52%), Positives = 154/223 (69%), Gaps = 1/223 (0%) Query: 1 MTTSTDDLALASDFRPATYDDWRKLVDGVLKGAPFEKLVGKTYDGLKIDPIYRRATNASP 60 M+++ +L LA+DF PA Y+DWRKLVDGVLKGAPFEKL+ K+ DG++IDPIY RA +A+P Sbjct: 1 MSSANQELRLAADFAPAGYEDWRKLVDGVLKGAPFEKLISKSSDGIQIDPIYVRARDAAP 60 Query: 61 LAGRAAAAPWRILQRVDHPDAAQANAQALQDLENGATGLEFEFAGGPGARGFGLADVSKK 120 +AGRA AAPWRI+QRVDHP+ +AN ALQDLENGATGL FAG GARGFGL +++ Sbjct: 61 IAGRAPAAPWRIMQRVDHPEPKEANKLALQDLENGATGLTLVFAGSVGARGFGL-PATQE 119 Query: 121 TLARACGGIHLDAGIMIALNPVIGRENAGETFADMVEARKLDPAKLDLHFNYQALSTMAV 180 +A+A +HLDAGI + L + AD++++R +PA D+ F L AV Sbjct: 120 AIAQALESVHLDAGIAVELQFPPQSCDVVRHLADLIKSRGTNPAACDIRFGIDPLGARAV 179 Query: 181 RGAAAIAWPNYEKSFGQVVNGLIKRGFKGPFVLADGRPVAVAG 223 +G++A W K GQV GL GF GPF++ADGR + AG Sbjct: 180 QGSSATEWSEIAKGIGQVATGLAGAGFNGPFLVADGRVIHDAG 222 >ref|ZP_08629241.1| methylmalonyl-CoA mutase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07734.1| methylmalonyl-CoA mutase [Bradyrhizobiaceae bacterium SG-6C] Length = 620 Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 120/223 (53%), Positives = 148/223 (66%), Gaps = 1/223 (0%) Query: 1 MTTSTDDLALASDFRPATYDDWRKLVDGVLKGAPFEKLVGKTYDGLKIDPIYRRATNASP 60 M+ TD L LAS+F PA+ DDWRKL DGVLKG PFE+LVGKTYDGL+IDPIY RA NA+ Sbjct: 1 MSNETDTLPLASEFPPASRDDWRKLADGVLKGTPFERLVGKTYDGLRIDPIYERARNAAT 60 Query: 61 LAGRAAAAPWRILQRVDHPDAAQANAQALQDLENGATGLEFEFAGGPGARGFGLADVSKK 120 + RAA APW I+QRVDHPDAA ANAQAL DLENGATGL FAG ARG+GL +K Sbjct: 61 IPARAAGAPWAIMQRVDHPDAAIANAQALHDLENGATGLTVVFAGANAARGYGLPP-TKD 119 Query: 121 TLARACGGIHLDAGIMIALNPVIGRENAGETFADMVEARKLDPAKLDLHFNYQALSTMAV 180 L RA G++LDAGI I L + G+ A+++ RK+ P+ + + F + V Sbjct: 120 ALKRALDGVYLDAGIDIELEIGPQSRDMGQHLAELLAERKITPSAVKVRFGLDPIGGGGV 179 Query: 181 RGAAAIAWPNYEKSFGQVVNGLIKRGFKGPFVLADGRPVAVAG 223 RG++ W + K FG + L K GF+GPF ADGR + AG Sbjct: 180 RGSSHGPWESIAKVFGGKITQLTKLGFRGPFAPADGRVIHDAG 222 >ref|YP_569065.1| methylmalonyl-CoA mutase [Rhodopseudomonas palustris BisB5] gb|ABE39164.1| Methylmalonyl-CoA mutase [Rhodopseudomonas palustris BisB5] Length = 623 Score = 221 bits (564), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 125/223 (56%), Positives = 154/223 (69%), Gaps = 1/223 (0%) Query: 1 MTTSTDDLALASDFRPATYDDWRKLVDGVLKGAPFEKLVGKTYDGLKIDPIYRRATNASP 60 M++++ +L LA+DF PA YDDWRKLVDGVLKGA FEKLVGKTYDG+KIDPIY RA +A+P Sbjct: 1 MSSASKELPLAADFAPAGYDDWRKLVDGVLKGASFEKLVGKTYDGVKIDPIYPRARDAAP 60 Query: 61 LAGRAAAAPWRILQRVDHPDAAQANAQALQDLENGATGLEFEFAGGPGARGFGLADVSKK 120 +AGR A PW+I+QR+DHPDAAQANAQALQDLENGATGL FAG GARGFGL +K Sbjct: 61 VAGRGPAEPWQIMQRIDHPDAAQANAQALQDLENGATGLTLVFAGSVGARGFGLPG-TKD 119 Query: 121 TLARACGGIHLDAGIMIALNPVIGRENAGETFADMVEARKLDPAKLDLHFNYQALSTMAV 180 +A+A GIHLDAGI I L + D++++R DPA D+ F L AV Sbjct: 120 AVAKALEGIHLDAGIAIELQFPPQSCDVVRHLVDLIKSRGTDPAACDIRFGIDPLGARAV 179 Query: 181 RGAAAIAWPNYEKSFGQVVNGLIKRGFKGPFVLADGRPVAVAG 223 +G++ W + +V GL GFK PF+ ADGR + AG Sbjct: 180 QGSSPTDWSEIARGVSEVATGLAGTGFKAPFLAADGRVIHDAG 222