BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0248.0037.p (251 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001682163.1| TetR family transcriptional regulator [Caulo... 261 5e-68 ref|YP_003609299.1| TetR family transcriptional regulator [Burkh... 224 1e-56 ref|YP_004280214.1| TetR family transcriptional regulator [Agrob... 154 2e-35 ref|YP_002005421.1| TetR family transcriptional regulator [Cupri... 147 2e-33 ref|YP_004350040.1| TetR family regulatory protein [Burkholderia... 142 4e-32 >ref|YP_001682163.1| TetR family transcriptional regulator [Caulobacter sp. K31] gb|ABZ69665.1| transcriptional regulator, TetR family [Caulobacter sp. K31] Length = 218 Score = 261 bits (668), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 129/215 (60%), Positives = 160/215 (74%), Gaps = 1/215 (0%) Query: 37 LFKDQSVYISAMSRQTPVQSPRGRPRSFDTEAAVERAMNVFWSRGYHATALPDLLRATKL 96 L ++S+Y M++ +PRGRPR FD +AAVERAM VFWS GYH T+LPDLL ATKL Sbjct: 5 LTTERSIYY-GMAQPISPPTPRGRPREFDPDAAVERAMGVFWSHGYHGTSLPDLLSATKL 63 Query: 97 SRGSLYAAFGDKHSLFLRALDRYIADAVTRMDDELDPGRDPVDGLRAYLAGYVERTCGAN 156 SRGSLYAAFGDKH LFLRALDRYI +A+TR+D ELD + + G+R LAGYV+RT G Sbjct: 64 SRGSLYAAFGDKHGLFLRALDRYIDEALTRLDSELDSRKSALAGVRTCLAGYVDRTSGVA 123 Query: 157 GRRGCLLVATAMELAGQDAEVGRRFASFFKTMEARVADAFSRAETAGKLAAGVEPSSAAR 216 GRRGCL+VATAMELA D+EV +R FF ME R+A+A +RA+ +G+LA GVEP +AAR Sbjct: 124 GRRGCLVVATAMELAAHDSEVEQRILRFFGAMETRLAEAMARAQASGELADGVEPKTAAR 183 Query: 217 ILICFLWGLRVVAKTAPARTTSQATADALLDRFLR 251 +L+C + G+RVV KT R SQA L+DRF + Sbjct: 184 LLVCLVEGMRVVGKTGSDRAVSQAVVQTLIDRFTK 218 >ref|YP_003609299.1| TetR family transcriptional regulator [Burkholderia sp. CCGE1002] gb|ADG19788.1| transcriptional regulator, TetR family [Burkholderia sp. CCGE1002] Length = 205 Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 109/182 (59%), Positives = 130/182 (71%) Query: 51 QTPVQSPRGRPRSFDTEAAVERAMNVFWSRGYHATALPDLLRATKLSRGSLYAAFGDKHS 110 T RGRPR FD + +ERAM VFW+ GY T+LPDL++AT LSRGSLYAAFGDKH Sbjct: 5 NTITDRQRGRPREFDVDHTIERAMQVFWTLGYQGTSLPDLMQATGLSRGSLYAAFGDKHG 64 Query: 111 LFLRALDRYIADAVTRMDDELDPGRDPVDGLRAYLAGYVERTCGANGRRGCLLVATAMEL 170 LFL ALD YI A+ R+D EL G+ + GL+A + GYVERT GA G+RGCL+VATAMEL Sbjct: 65 LFLLALDHYIVQALKRLDFELASGQKALAGLKACMDGYVERTNGAAGKRGCLVVATAMEL 124 Query: 171 AGQDAEVGRRFASFFKTMEARVADAFSRAETAGKLAAGVEPSSAARILICFLWGLRVVAK 230 A D EV R A FF+TMEAR+A+A RA+ G L V P +AA +L+CFL GLRVV K Sbjct: 125 AAHDHEVANRIAYFFRTMEARLANALKRAQKEGDLGKNVSPEAAAHMLVCFLEGLRVVRK 184 Query: 231 TA 232 T Sbjct: 185 TG 186 >ref|YP_004280214.1| TetR family transcriptional regulator [Agrobacterium sp. H13-3] gb|ADY67836.1| transcriptional regulator, TetR family [Agrobacterium sp. H13-3] Length = 226 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 81/217 (37%), Positives = 124/217 (57%) Query: 30 AIDRNHLLFKDQSVYISAMSRQTPVQSPRGRPRSFDTEAAVERAMNVFWSRGYHATALPD 89 AI + L + +I+ M ++T + + GRPR F+ + AV +AM+VFW RGYH +LPD Sbjct: 6 AIPKISLALWTKWFHIALMVKRTQISASVGRPREFELDEAVRKAMHVFWDRGYHEASLPD 65 Query: 90 LLRATKLSRGSLYAAFGDKHSLFLRALDRYIADAVTRMDDELDPGRDPVDGLRAYLAGYV 149 LL KLSRGS Y AF DK ++LRALD YI DAV + + L P + + V Sbjct: 66 LLEGMKLSRGSFYKAFVDKRGVYLRALDAYIEDAVRSVGEALHSNPSPKAAILEAFSQQV 125 Query: 150 ERTCGANGRRGCLLVATAMELAGQDAEVGRRFASFFKTMEARVADAFSRAETAGKLAAGV 209 ++ G +G RGC +V A+E+ +D EV R + F+ ++ A A RA+ G++ + Sbjct: 126 DQASGQDGLRGCFVVFAAVEMLPKDKEVAPRISRLFRRLQDLYAAAIIRAQALGEIDPEL 185 Query: 210 EPSSAARILICFLWGLRVVAKTAPARTTSQATADALL 246 + + AR L+C + G+RV+AK R ++A + L Sbjct: 186 DERTLARFLVCQIQGMRVLAKAGADRAETRAMVELAL 222 >ref|YP_002005421.1| TetR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] emb|CAQ69354.1| putative transcriptional regulator, TetR family [Cupriavidus taiwanensis LMG 19424] Length = 207 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 84/203 (41%), Positives = 115/203 (56%), Gaps = 1/203 (0%) Query: 45 ISAMSRQTPVQS-PRGRPRSFDTEAAVERAMNVFWSRGYHATALPDLLRATKLSRGSLYA 103 +SA P + RGRPR F + A++RA+ VF RGYH ++ DL RA +L++GSLY Sbjct: 1 MSASQSHNPTRPRSRGRPREFSLDQALDRAVRVFSERGYHGASISDLTRAMRLAQGSLYK 60 Query: 104 AFGDKHSLFLRALDRYIADAVTRMDDELDPGRDPVDGLRAYLAGYVERTCGANGRRGCLL 163 AF DK SLFL A DRY + + +D +D LRA LA Y E GA GR+GCL+ Sbjct: 61 AFKDKQSLFLAAFDRYRSLRSETLQRAIDNAGTGLDRLRATLAFYAESAQGAAGRQGCLV 120 Query: 164 VATAMELAGQDAEVGRRFASFFKTMEARVADAFSRAETAGKLAAGVEPSSAARILICFLW 223 VA+ +EL D V R A+ EA +A+ + + G + A V + A++L+C Sbjct: 121 VASTVELCAFDKPVARHIAAALSRNEAFLAELIRQGQEDGSIPAHVNVEATAQVLLCLTQ 180 Query: 224 GLRVVAKTAPARTTSQATADALL 246 G+RVV KT +R QA DA L Sbjct: 181 GMRVVGKTGRSREQMQAVVDAAL 203 >ref|YP_004350040.1| TetR family regulatory protein [Burkholderia gladioli BSR3] gb|AEA64528.1| TetR family regulatory protein [Burkholderia gladioli BSR3] Length = 198 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 83/193 (43%), Positives = 108/193 (55%), Gaps = 5/193 (2%) Query: 59 GRPRSFDTEAAVERAMNVFWSRGYHATALPDLLRATKLSRGSLYAAFGDKHSLFLRALDR 118 GRPR F+ + A AMNVFW RGY +LPDL+ T LSRGSLY AFGDK L L ALD Sbjct: 8 GRPREFELDDAARDAMNVFWDRGYEGASLPDLIAGTGLSRGSLYKAFGDKKGLLLAALDL 67 Query: 119 YIADAVTRMDDELDPGRDPVDGLRAYLAGYVERTCGANGRRGCLLVATAMELAGQDAEVG 178 Y+AD + D L D +R L Y + GA GRRGCL+VA E+A DAEV Sbjct: 68 YMADGLKATADILAQPGAVKDAIRDSLLRYASLSVGAAGRRGCLVVAMTTEMAAHDAEVA 127 Query: 179 RRFASFFKTMEARVADAFSRAETAGKLAAGVEPSSAARILICFLWGLRVVAKTAPARTTS 238 R F+ ++ A A R + +G++A + AR L+C + G+RV+ KT Sbjct: 128 ERSGRMFRRLQQLYAGAIVRGQASGEIAE-RDEQVLARFLVCQIEGMRVLGKTG----MH 182 Query: 239 QATADALLDRFLR 251 +A AL+D +R Sbjct: 183 EADMLALVDSTMR 195