BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0248.0035.p (189 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001206887.1| two-component sensor histidine kinase [Brady... 261 3e-68 ref|YP_001239118.1| two-component sensor histidine kinase [Brady... 256 9e-67 ref|NP_769780.1| two-component sensor histidine kinase [Bradyrhi... 247 5e-64 ref|YP_569154.1| ATPase-like ATP-binding protein [Rhodopseudomon... 235 3e-60 ref|YP_487043.1| histidine kinase [Rhodopseudomonas palustris Ha... 228 3e-58 >ref|YP_001206887.1| two-component sensor histidine kinase [Bradyrhizobium sp. ORS 278] emb|CAL78670.1| putative two-component sensor histidine kinase with a ATP-binding domain (C-term) [Bradyrhizobium sp. ORS 278] Length = 774 Score = 261 bits (667), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 130/176 (73%), Positives = 153/176 (86%), Gaps = 2/176 (1%) Query: 1 LAQSIAKPAYHRLLTAEPALRRAVPTLIIAFLITICLGAFVQVIDQSRQKRGAMKRDLAA 60 LAQSIAKPAY RLLTAEP LRRAVPTLIIAFL+TICLGAFVQV+D SRQKRGA KRDLAA Sbjct: 20 LAQSIAKPAYQRLLTAEPVLRRAVPTLIIAFLVTICLGAFVQVLDHSRQKRGATKRDLAA 79 Query: 61 LSDILAERLDRLTSVRRDRLANIERMQELLPDLIPSWGIAYGRHVIITSADHRVLARVPV 120 +SD+LA+R+ + ++R DR+ANIE +Q LLPDLIP+WG A GRHVI+T ADHR+LARVPV Sbjct: 80 ISDLLADRIGHI-AMRPDRIANIEHLQALLPDLIPAWGSAPGRHVIVTGADHRILARVPV 138 Query: 121 D-GAGENDRILDIVSTAQLLVAPGQQGTVSDMTLPGGTGALAISQLVKSLPGQVVV 175 D G GENDRILD++STAQLL PG QG V+++TLP G A A+SQL+K+LPG+VVV Sbjct: 139 DTGLGENDRILDLISTAQLLATPGLQGAVTEITLPNGRPAFAVSQLIKALPGRVVV 194 >ref|YP_001239118.1| two-component sensor histidine kinase [Bradyrhizobium sp. BTAi1] gb|ABQ35212.1| putative two-component sensor histidine kinase with a ATP-binding domain (C-term) [Bradyrhizobium sp. BTAi1] Length = 774 Score = 256 bits (655), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 127/176 (72%), Positives = 152/176 (86%), Gaps = 2/176 (1%) Query: 1 LAQSIAKPAYHRLLTAEPALRRAVPTLIIAFLITICLGAFVQVIDQSRQKRGAMKRDLAA 60 LAQSIAKPAY RLLTAEP LRRAVPTLIIAFL+TICLGAFVQV+DQSRQKR A KRDL A Sbjct: 20 LAQSIAKPAYQRLLTAEPVLRRAVPTLIIAFLVTICLGAFVQVLDQSRQKRAATKRDLTA 79 Query: 61 LSDILAERLDRLTSVRRDRLANIERMQELLPDLIPSWGIAYGRHVIITSADHRVLARVPV 120 +SD+LA+R+ + ++R DR+A+IE +Q LLPD+IP+WG A GRHVI+T ADHR+LARVPV Sbjct: 80 VSDLLADRIGHM-AMRPDRVAHIEHLQSLLPDMIPAWGAAPGRHVIVTGADHRILARVPV 138 Query: 121 DGA-GENDRILDIVSTAQLLVAPGQQGTVSDMTLPGGTGALAISQLVKSLPGQVVV 175 D A GENDRILD++STAQLL PG QG V+++TLP G A AISQL+K+LPG+VV+ Sbjct: 139 DAALGENDRILDLISTAQLLATPGLQGAVTEITLPNGRPAFAISQLIKALPGRVVI 194 >ref|NP_769780.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] dbj|BAC48405.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] Length = 776 Score = 247 bits (631), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 125/178 (70%), Positives = 148/178 (83%), Gaps = 3/178 (1%) Query: 1 LAQSIAKPAYHRLLTAEPALRRAVPTLIIAFLITICLGAFVQVIDQSRQKRGAMKRDLAA 60 LAQSIAKPAYHRLL AEPALRRAVPTLIIAFLITICLGAFVQV+DQ+RQKR ++ D++A Sbjct: 19 LAQSIAKPAYHRLLIAEPALRRAVPTLIIAFLITICLGAFVQVVDQTRQKRLVIRHDISA 78 Query: 61 LSDILAERLDRLTSVRRDRLANIERMQELLPDLIPSWGIAYGRHVIITSA--DHRVLARV 118 L+D+LAER+DRLTS R++RL NIE + LLPDLIPSWG A GRHVI+TSA D R+LAR+ Sbjct: 79 LADLLAERIDRLTSSRQERLKNIESLPALLPDLIPSWGTATGRHVIVTSAGVDRRILARI 138 Query: 119 PVDG-AGENDRILDIVSTAQLLVAPGQQGTVSDMTLPGGTGALAISQLVKSLPGQVVV 175 PVD NDR+LD ++TAQLL AP + G +SDMTLP G A+AIS+ +KSLPG V V Sbjct: 139 PVDSDPSGNDRLLDSITTAQLLAAPPRDGNISDMTLPNGNAAMAISRQIKSLPGFVTV 196 >ref|YP_569154.1| ATPase-like ATP-binding protein [Rhodopseudomonas palustris BisB5] gb|ABE39253.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] Length = 771 Score = 235 bits (599), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 119/176 (67%), Positives = 138/176 (78%), Gaps = 1/176 (0%) Query: 1 LAQSIAKPAYHRLLTAEPALRRAVPTLIIAFLITICLGAFVQVIDQSRQKRGAMKRDLAA 60 LAQSIAKPAYHRLLTAEP LRRAVP LIIAFL+TIC GA VQVIDQSRQKR A+ RDL+A Sbjct: 19 LAQSIAKPAYHRLLTAEPVLRRAVPILIIAFLVTICFGAAVQVIDQSRQKRAALNRDLSA 78 Query: 61 LSDILAERLDRLTSVRRDRLANIERMQELLPDLIPSWGIAYGRHVIITSADHRVLARVPV 120 L+D+LAERL+ + VR DR A+IER+Q LLP L+PSWGIA GRHVI+T AD RVLARVP Sbjct: 79 LADLLAERLEHIGVVRLDRAASIERLQSLLPGLVPSWGIAAGRHVIVTGADQRVLARVPG 138 Query: 121 D-GAGENDRILDIVSTAQLLVAPGQQGTVSDMTLPGGTGALAISQLVKSLPGQVVV 175 D GA +R LDI+S L QQG +S++TLP G ALA +KSLPGQV++ Sbjct: 139 DEGASAANRFLDIISATPTLTKSSQQGVLSEITLPSGASALATLHTIKSLPGQVII 194 >ref|YP_487043.1| histidine kinase [Rhodopseudomonas palustris HaA2] gb|ABD08132.1| histidine kinase [Rhodopseudomonas palustris HaA2] Length = 771 Score = 228 bits (582), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 120/176 (68%), Positives = 133/176 (75%), Gaps = 1/176 (0%) Query: 1 LAQSIAKPAYHRLLTAEPALRRAVPTLIIAFLITICLGAFVQVIDQSRQKRGAMKRDLAA 60 LAQSIAKPAYHRLLTAEP LRRAVP LIIAFLITIC GA VQ IDQSRQKR A+ RDL A Sbjct: 19 LAQSIAKPAYHRLLTAEPVLRRAVPILIIAFLITICFGAAVQFIDQSRQKRAALNRDLCA 78 Query: 61 LSDILAERLDRLTSVRRDRLANIERMQELLPDLIPSWGIAYGRHVIITSADHRVLARVPV 120 L+D+LAERL+ + VR DR A+IER+Q LLP LIPSWGIA GRHVI+TSAD RVLARVP Sbjct: 79 LADLLAERLEHIGVVRLDRPASIERLQNLLPGLIPSWGIAAGRHVIVTSADQRVLARVPG 138 Query: 121 D-GAGENDRILDIVSTAQLLVAPGQQGTVSDMTLPGGTGALAISQLVKSLPGQVVV 175 D G LDI+S L QQGT++ + LP G ALA VKSLPGQV+V Sbjct: 139 DEGTSAASSFLDIISATPPLTRSAQQGTITQIILPSGASALATLHTVKSLPGQVIV 194