BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0248.0034.p (562 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769780.1| two-component sensor histidine kinase [Bradyrhi... 956 0.0 ref|YP_001239118.1| two-component sensor histidine kinase [Brady... 951 0.0 ref|YP_531725.1| multi-sensor signal transduction histidine kina... 948 0.0 ref|YP_001206887.1| two-component sensor histidine kinase [Brady... 947 0.0 ref|YP_576731.1| periplasmic sensor signal transduction histidin... 937 0.0 >ref|NP_769780.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] dbj|BAC48405.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] Length = 776 Score = 956 bits (2472), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/564 (83%), Positives = 506/564 (89%), Gaps = 2/564 (0%) Query: 1 VTLSATTSFVVLILGFAFHWQSTRAREGDLINDAVRGRIDTALNRGRCGLWDWDLSRGRI 60 VTLSATT FVVLILGFAFHWQSTRAREGDLINDAVRGRIDTALNRGRCGLWDWDLSRGRI Sbjct: 213 VTLSATTGFVVLILGFAFHWQSTRAREGDLINDAVRGRIDTALNRGRCGLWDWDLSRGRI 272 Query: 61 FWSQSMFTLLGLDTRNDLLTFGEVNALVNSDDINLFDIADQLISGKIDHIDQSFRMRHVG 120 FWSQSMF++LGLD RN+LLTFGEVNALV SDDI+LF+IADQLIS KIDHIDQ+FRM+HV Sbjct: 273 FWSQSMFSMLGLDGRNELLTFGEVNALVKSDDIDLFEIADQLISEKIDHIDQTFRMQHVD 332 Query: 121 GHWIWLRVRCELSHAAADGGLHLIGIAVDITEQKSLAEKSVEADLRLRDAIETIPEAFVL 180 GHWIWLRVRCE + A D +HLIGIAVDITEQKSLAE++VEADLRLRDAIETIPEAFVL Sbjct: 333 GHWIWLRVRCEKTSGATDSSVHLIGIAVDITEQKSLAERTVEADLRLRDAIETIPEAFVL 392 Query: 181 WDADDRLVLCNSHFQRLHRLPDSAVSPGTSYETVIEVGSMPEVRTRLHESGVPAPGARTF 240 WDA DRLVLCNSHFQRLH+LPDSAV PGTSYETV+EVG MPEVRTR +E+ PGARTF Sbjct: 393 WDASDRLVLCNSHFQRLHKLPDSAVIPGTSYETVLEVGRMPEVRTRHNETAAQGPGARTF 452 Query: 241 EAQLDDGSWLHISERRTKDGGYVSVGTDITRIKAHEQKLVDNDLRLRATVIDLQRSQA-- 298 EAQLDDGSWLHISERRTKDGGYVSVGTDITRIK HEQKLVDNDLRLRATVIDL+RSQA Sbjct: 453 EAQLDDGSWLHISERRTKDGGYVSVGTDITRIKEHEQKLVDNDLRLRATVIDLKRSQAAL 512 Query: 299 EXQAVELADLAEKYSQEKTRAEDANAAKSKFLANMSHELRTPLNAIIGFSEIMGSGLFGT 358 E Q ELADLAEKY +EKTRAE+AN KSKFLANMSHELRTPLNAIIGFSEIMGSGLFG Sbjct: 513 ERQTNELADLAEKYQREKTRAEEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGLFGE 572 Query: 359 LGSDKYAEYCHDILTSGKYLLEVINDILDMSKIEAGRMKFDMEPLDLSGILAESLRVVSG 418 LGS+KY EYC DILTSG YLLEVINDILDMSKIEAGRMK DME LDL+ LAESLRVVSG Sbjct: 573 LGSEKYQEYCQDILTSGHYLLEVINDILDMSKIEAGRMKLDMEELDLARTLAESLRVVSG 632 Query: 419 RAEHKGLSLESDIESTISVVADRRAVKQIIVNLLSNAVKFTPDHGRVLVRGQMLDDSIVL 478 RA+ K L+L++DIE +ISVVADRRA KQIIVNLLSNAVKFTPD GR++VR + LDD IVL Sbjct: 633 RAQDKHLTLDADIEKSISVVADRRATKQIIVNLLSNAVKFTPDGGRIVVRSRQLDDRIVL 692 Query: 479 LIADSGIGIAPESLRRLGKPFEQVESQLTKSYQGSGLGLAIARSLTNLHGGSMRLRSKLG 538 +IAD+GIGIAP SL RLG+PFEQVESQLTK+Y GSGLGLAIARSL LHGGSMRLRSK+ Sbjct: 693 MIADTGIGIAPHSLARLGRPFEQVESQLTKTYHGSGLGLAIARSLAQLHGGSMRLRSKID 752 Query: 539 VGTVVRVTLPRDPRSLQTKLPEAA 562 VGTVVRVTLPRD + + AA Sbjct: 753 VGTVVRVTLPRDAVKAASGISAAA 776 >ref|YP_001239118.1| two-component sensor histidine kinase [Bradyrhizobium sp. BTAi1] gb|ABQ35212.1| putative two-component sensor histidine kinase with a ATP-binding domain (C-term) [Bradyrhizobium sp. BTAi1] Length = 774 Score = 951 bits (2457), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/564 (82%), Positives = 502/564 (89%), Gaps = 2/564 (0%) Query: 1 VTLSATTSFVVLILGFAFHWQSTRAREGDLINDAVRGRIDTALNRGRCGLWDWDLSRGRI 60 VTLSATT FVVLILGFAFHWQSTRAREGDLINDAVRGRIDTALNRGRCGLWDWDLSRGRI Sbjct: 211 VTLSATTGFVVLILGFAFHWQSTRAREGDLINDAVRGRIDTALNRGRCGLWDWDLSRGRI 270 Query: 61 FWSQSMFTLLGLDTRNDLLTFGEVNALVNSDDINLFDIADQLISGKIDHIDQSFRMRHVG 120 FWS SMF +LGLD R DLLTFGEVNALVNSDDI+LF IADQL++G I IDQSFRMRH Sbjct: 271 FWSNSMFEMLGLDNRTDLLTFGEVNALVNSDDIDLFAIADQLVAGDIHQIDQSFRMRHTE 330 Query: 121 GHWIWLRVRCELSHAAADGGLHLIGIAVDITEQKSLAEKSVEADLRLRDAIETIPEAFVL 180 GHWIWLRVRCELS GLHLIGIAVDITEQKSLAEK+VEADLRLRDAIETI EAFVL Sbjct: 331 GHWIWLRVRCELSQGTTASGLHLIGIAVDITEQKSLAEKTVEADLRLRDAIETISEAFVL 390 Query: 181 WDADDRLVLCNSHFQRLHRLPDSAVSPGTSYETVIEVGSMPEVRTRLHESGVPAPGARTF 240 WDA++RLVLCNSHFQ+LH+LPDSAV PGTSYETVIEVG MPE+RTRLH+ +PGARTF Sbjct: 391 WDANNRLVLCNSHFQKLHKLPDSAVIPGTSYETVIEVGKMPEIRTRLHDHSQQSPGARTF 450 Query: 241 EAQLDDGSWLHISERRTKDGGYVSVGTDITRIKAHEQKLVDNDLRLRATVIDLQRSQA-- 298 EAQLDDGSWLHISERRTKDGGYVSVGTDITRIK HEQKLVDNDLRLRATVIDLQRSQ+ Sbjct: 451 EAQLDDGSWLHISERRTKDGGYVSVGTDITRIKEHEQKLVDNDLRLRATVIDLQRSQSAL 510 Query: 299 EXQAVELADLAEKYSQEKTRAEDANAAKSKFLANMSHELRTPLNAIIGFSEIMGSGLFGT 358 E QA+ELADLAEKYSQEKTRAE+AN KSKFLANMSHELRTPLNAIIGFSEIMGSG+FG+ Sbjct: 511 ERQAIELADLAEKYSQEKTRAEEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGS 570 Query: 359 LGSDKYAEYCHDILTSGKYLLEVINDILDMSKIEAGRMKFDMEPLDLSGILAESLRVVSG 418 LGS+KY EYCHDILTSG+YLLEVINDILDMSKIEAGRMK DMEPLDL+ LAESLRVVSG Sbjct: 571 LGSEKYQEYCHDILTSGQYLLEVINDILDMSKIEAGRMKLDMEPLDLAKTLAESLRVVSG 630 Query: 419 RAEHKGLSLESDIESTISVVADRRAVKQIIVNLLSNAVKFTPDHGRVLVRGQMLDDSIVL 478 RA+ K L L++DIE I +VADRRA KQI+VNLLSNAVKFTP+ GRV +R ++ DD +VL Sbjct: 631 RAQDKRLVLDADIEGNIPIVADRRATKQIMVNLLSNAVKFTPEGGRVTMRSRVFDDKVVL 690 Query: 479 LIADSGIGIAPESLRRLGKPFEQVESQLTKSYQGSGLGLAIARSLTNLHGGSMRLRSKLG 538 +IAD+GIGI +SL RLG+PFEQVESQ+TK+Y GSGLGLAIARSLT LHGGSMRLRS++ Sbjct: 691 IIADTGIGIPAQSLARLGRPFEQVESQMTKTYHGSGLGLAIARSLTQLHGGSMRLRSRIE 750 Query: 539 VGTVVRVTLPRDPRSLQTKLPEAA 562 GTVVRVTLPRD + AA Sbjct: 751 SGTVVRVTLPRDAYKATASISVAA 774 >ref|YP_531725.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] gb|ABD87406.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 775 Score = 948 bits (2450), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/564 (81%), Positives = 509/564 (90%), Gaps = 2/564 (0%) Query: 1 VTLSATTSFVVLILGFAFHWQSTRAREGDLINDAVRGRIDTALNRGRCGLWDWDLSRGRI 60 +TLSATT FVVLILGFAFHWQSTRAREGDLINDAVRGRIDTALNRGRCGLWDWDLSRGRI Sbjct: 212 ITLSATTGFVVLILGFAFHWQSTRAREGDLINDAVRGRIDTALNRGRCGLWDWDLSRGRI 271 Query: 61 FWSQSMFTLLGLDTRNDLLTFGEVNALVNSDDINLFDIADQLISGKIDHIDQSFRMRHVG 120 FWSQSMFT+LGL++R+DLLTFGEVNALV SDDI+LF IA+QLI+G I ID +FRM+H Sbjct: 272 FWSQSMFTMLGLESRSDLLTFGEVNALVKSDDIDLFAIANQLITGTISQIDHTFRMQHAN 331 Query: 121 GHWIWLRVRCELSHAAADGGLHLIGIAVDITEQKSLAEKSVEADLRLRDAIETIPEAFVL 180 GHWIWLRVRCELS A D G HLIGIAVDITE KSLAE++VEADLRLRDAIETIPEAFVL Sbjct: 332 GHWIWLRVRCELSQGAGDAGTHLIGIAVDITEHKSLAERTVEADLRLRDAIETIPEAFVL 391 Query: 181 WDADDRLVLCNSHFQRLHRLPDSAVSPGTSYETVIEVGSMPEVRTRLHESGVPAPGARTF 240 WDA++RLVLCNSHFQRLH+LPDSAV+PGTSYETV+EVG+MPE RTRL E+G PGARTF Sbjct: 392 WDAENRLVLCNSHFQRLHKLPDSAVTPGTSYETVVEVGTMPEARTRLPEAGHHPPGARTF 451 Query: 241 EAQLDDGSWLHISERRTKDGGYVSVGTDITRIKAHEQKLVDNDLRLRATVIDLQRSQA-- 298 EAQLD+G WLHISERRTKDGGYV+VGTDITRIK HEQKLV+NDLRLRATV+DL+RSQA Sbjct: 452 EAQLDNGKWLHISERRTKDGGYVAVGTDITRIKEHEQKLVENDLRLRATVVDLKRSQATL 511 Query: 299 EXQAVELADLAEKYSQEKTRAEDANAAKSKFLANMSHELRTPLNAIIGFSEIMGSGLFGT 358 E QAVEL DLA+KYS+EK RAEDAN KSKFLANMSHELRTPLNAIIGFSEIMGSG+FG+ Sbjct: 512 ERQAVELVDLAQKYSEEKNRAEDANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGS 571 Query: 359 LGSDKYAEYCHDILTSGKYLLEVINDILDMSKIEAGRMKFDMEPLDLSGILAESLRVVSG 418 LGS+KY EYCHDILTSG YLLEVINDILDMSKIEAGRMK D+EP DL+ L+ESLRVVSG Sbjct: 572 LGSEKYQEYCHDILTSGHYLLEVINDILDMSKIEAGRMKLDLEPFDLATTLSESLRVVSG 631 Query: 419 RAEHKGLSLESDIESTISVVADRRAVKQIIVNLLSNAVKFTPDHGRVLVRGQMLDDSIVL 478 RA++K L L +DI++ I V+ADRRA+KQI+VNLLSNAVKFTPD GRV VRG++ ++ IVL Sbjct: 632 RADNKQLMLRADIDNDIPVLADRRAIKQILVNLLSNAVKFTPDGGRVTVRGRVFEEQIVL 691 Query: 479 LIADSGIGIAPESLRRLGKPFEQVESQLTKSYQGSGLGLAIARSLTNLHGGSMRLRSKLG 538 LIAD+GIGIA +SLRRLG+PFEQVESQLTK+Y GSGLGLAIA+SLTNLHGGSMRLRS+LG Sbjct: 692 LIADTGIGIAKQSLRRLGQPFEQVESQLTKTYHGSGLGLAIAKSLTNLHGGSMRLRSQLG 751 Query: 539 VGTVVRVTLPRDPRSLQTKLPEAA 562 VGTVVRV LPRD K+ AA Sbjct: 752 VGTVVRVALPRDAAKAGDKISAAA 775 >ref|YP_001206887.1| two-component sensor histidine kinase [Bradyrhizobium sp. ORS 278] emb|CAL78670.1| putative two-component sensor histidine kinase with a ATP-binding domain (C-term) [Bradyrhizobium sp. ORS 278] Length = 774 Score = 947 bits (2447), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/564 (81%), Positives = 503/564 (89%), Gaps = 2/564 (0%) Query: 1 VTLSATTSFVVLILGFAFHWQSTRAREGDLINDAVRGRIDTALNRGRCGLWDWDLSRGRI 60 +TLSATT FVVLILGFAFHWQSTRAREGDLINDAVRGRIDTALNRGRCGLWDWDLSRGRI Sbjct: 211 ITLSATTGFVVLILGFAFHWQSTRAREGDLINDAVRGRIDTALNRGRCGLWDWDLSRGRI 270 Query: 61 FWSQSMFTLLGLDTRNDLLTFGEVNALVNSDDINLFDIADQLISGKIDHIDQSFRMRHVG 120 FWS SMF +LGLD R DLLTFGEVNALVNSDDI+LF IADQL++G++ HIDQSFRMRH Sbjct: 271 FWSNSMFAMLGLDNRTDLLTFGEVNALVNSDDIDLFAIADQLVAGELRHIDQSFRMRHTE 330 Query: 121 GHWIWLRVRCELSHAAADGGLHLIGIAVDITEQKSLAEKSVEADLRLRDAIETIPEAFVL 180 GHWIWLRVRCELS D GLHLIGIAVD+TEQKSL EK+VEADLRLRDAIETI EAFVL Sbjct: 331 GHWIWLRVRCELSQGTTDSGLHLIGIAVDVTEQKSLVEKTVEADLRLRDAIETISEAFVL 390 Query: 181 WDADDRLVLCNSHFQRLHRLPDSAVSPGTSYETVIEVGSMPEVRTRLHESGVPAPGARTF 240 WD+++RLVLCNSHFQ+LH+LPDSAV+PGTSYETVIEVG MPE+RTRLH++ A G RTF Sbjct: 391 WDSNNRLVLCNSHFQKLHKLPDSAVTPGTSYETVIEVGKMPEIRTRLHDNSQQAQGGRTF 450 Query: 241 EAQLDDGSWLHISERRTKDGGYVSVGTDITRIKAHEQKLVDNDLRLRATVIDLQRSQA-- 298 EAQLDDGSWLHISERRTKDGGYVSVGTDITRIK HEQKLVDNDLRLRATVIDLQRSQ+ Sbjct: 451 EAQLDDGSWLHISERRTKDGGYVSVGTDITRIKEHEQKLVDNDLRLRATVIDLQRSQSAL 510 Query: 299 EXQAVELADLAEKYSQEKTRAEDANAAKSKFLANMSHELRTPLNAIIGFSEIMGSGLFGT 358 E QA+ELADLAEKYSQEKTRAE+AN KSKFLANMSHELRTPLNAIIGFSEIMGSG+FG+ Sbjct: 511 ERQAIELADLAEKYSQEKTRAEEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGS 570 Query: 359 LGSDKYAEYCHDILTSGKYLLEVINDILDMSKIEAGRMKFDMEPLDLSGILAESLRVVSG 418 LGS+KY EYCHDILTSG+YLLEVINDILDMSKIEAGRMK DMEPLDL+ LAESLRVVSG Sbjct: 571 LGSEKYQEYCHDILTSGQYLLEVINDILDMSKIEAGRMKLDMEPLDLAKTLAESLRVVSG 630 Query: 419 RAEHKGLSLESDIESTISVVADRRAVKQIIVNLLSNAVKFTPDHGRVLVRGQMLDDSIVL 478 RA+ K L L++DIE I V+ADRRA KQI+VNLLSNAVKFTP+ GRV +R ++ +D +VL Sbjct: 631 RAQDKSLVLDADIEGNIPVIADRRATKQIMVNLLSNAVKFTPEGGRVTMRSRVFEDKVVL 690 Query: 479 LIADSGIGIAPESLRRLGKPFEQVESQLTKSYQGSGLGLAIARSLTNLHGGSMRLRSKLG 538 +IAD+GIGI +SL RLG+PFEQVESQ+TK+Y GSGLGLAIARSL LHGGSMRLRS+L Sbjct: 691 IIADTGIGIPAQSLARLGRPFEQVESQMTKTYHGSGLGLAIARSLAQLHGGSMRLRSRLE 750 Query: 539 VGTVVRVTLPRDPRSLQTKLPEAA 562 GTVVRVTLPRD + AA Sbjct: 751 HGTVVRVTLPRDAYKATASISVAA 774 >ref|YP_576731.1| periplasmic sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] gb|ABE62271.1| periplasmic sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] Length = 775 Score = 937 bits (2422), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/554 (81%), Positives = 497/554 (89%), Gaps = 2/554 (0%) Query: 1 VTLSATTSFVVLILGFAFHWQSTRAREGDLINDAVRGRIDTALNRGRCGLWDWDLSRGRI 60 +TLSATT FVVLILGFAFHWQSTRAREGD+INDAVRGRIDTALNRGRCGLWDWDLSRGRI Sbjct: 212 ITLSATTGFVVLILGFAFHWQSTRAREGDVINDAVRGRIDTALNRGRCGLWDWDLSRGRI 271 Query: 61 FWSQSMFTLLGLDTRNDLLTFGEVNALVNSDDINLFDIADQLISGKIDHIDQSFRMRHVG 120 FWSQSMFT+LGL++R+DLLTFGE++AL N DDI+LF I DQLISGKI HIDQSFRMRH G Sbjct: 272 FWSQSMFTMLGLESRSDLLTFGEISALANPDDIDLFAIGDQLISGKIHHIDQSFRMRHSG 331 Query: 121 GHWIWLRVRCELSHAAADGGLHLIGIAVDITEQKSLAEKSVEADLRLRDAIETIPEAFVL 180 GHWIWLRVRCELS A DG HLIGIAVDITEQKSLAEK+VEADLRLRDAIETIPEAFVL Sbjct: 332 GHWIWLRVRCELSQGAGDGAAHLIGIAVDITEQKSLAEKTVEADLRLRDAIETIPEAFVL 391 Query: 181 WDADDRLVLCNSHFQRLHRLPDSAVSPGTSYETVIEVGSMPEVRTRLHESGVPAPGARTF 240 WDADDRLVLCNSHFQRLH+LP+SAV+ GTSYETVIEVG M E+ R E+G APGARTF Sbjct: 392 WDADDRLVLCNSHFQRLHKLPESAVAAGTSYETVIEVGRMHEICARPPETGTTAPGARTF 451 Query: 241 EAQLDDGSWLHISERRTKDGGYVSVGTDITRIKAHEQKLVDNDLRLRATVIDLQRSQA-- 298 EAQLD+G WL+ISERRTKDGGYVSVGTDITRIK HEQKLVDNDLRLRATVIDL+R+QA Sbjct: 452 EAQLDNGCWLNISERRTKDGGYVSVGTDITRIKEHEQKLVDNDLRLRATVIDLKRTQATL 511 Query: 299 EXQAVELADLAEKYSQEKTRAEDANAAKSKFLANMSHELRTPLNAIIGFSEIMGSGLFGT 358 E QA+ELADLA+KY++EK RAEDAN AKSKFLANMSHELRTPLNAIIGFSEIM +G+FGT Sbjct: 512 EQQAIELADLAQKYAKEKDRAEDANRAKSKFLANMSHELRTPLNAIIGFSEIMSNGMFGT 571 Query: 359 LGSDKYAEYCHDILTSGKYLLEVINDILDMSKIEAGRMKFDMEPLDLSGILAESLRVVSG 418 LGS+KY+EYCHDILTSG+YLLEVIND+LDMSKIEAGRMK DMEPLDLS LAESLRVV+G Sbjct: 572 LGSEKYSEYCHDILTSGQYLLEVINDVLDMSKIEAGRMKLDMEPLDLSRTLAESLRVVTG 631 Query: 419 RAEHKGLSLESDIESTISVVADRRAVKQIIVNLLSNAVKFTPDHGRVLVRGQMLDDSIVL 478 R K L+ + I+ I++ AD RAVKQIIVNLLSNAVKFTPD GRV+ R Q+ +S+ L Sbjct: 632 RTSDKKLTFDVRIDDDIAITADHRAVKQIIVNLLSNAVKFTPDGGRVMARSQVFANSVAL 691 Query: 479 LIADSGIGIAPESLRRLGKPFEQVESQLTKSYQGSGLGLAIARSLTNLHGGSMRLRSKLG 538 IAD+GIGIAP SLR+LGKPFEQVESQLTK+Y GSGLGLAIA+SL NLHGGSMRLRSK G Sbjct: 692 TIADTGIGIAPHSLRKLGKPFEQVESQLTKTYAGSGLGLAIAKSLVNLHGGSMRLRSKPG 751 Query: 539 VGTVVRVTLPRDPR 552 GTVVRVTLPR R Sbjct: 752 TGTVVRVTLPRHGR 765