BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0248.0030.p (298 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001239116.1| LysR family transcriptional regulator [Brady... 537 e-151 ref|YP_001206892.1| LysR family transcriptional regulator [Brady... 535 e-150 ref|NP_769779.1| hypothetical protein blr3139 [Bradyrhizobium ja... 535 e-150 ref|YP_534489.1| LysR family transcriptional regulator [Rhodopse... 520 e-146 ref|ZP_08628771.1| hydrogen peroxide response regulator [Bradyrh... 515 e-144 >ref|YP_001239116.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ35210.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1] Length = 297 Score = 537 bits (1383), Expect = e-151, Method: Compositional matrix adjust. Identities = 270/297 (90%), Positives = 285/297 (95%) Query: 1 LIDKLELLLALAKERHFGRAAEACGVTQPTMSTSLKQLEEILGVMLVQRGSRFQGFTPEG 60 +IDKLELLLALAKERHFGRAAEACGVTQPTMSTS+KQLEEILGVMLVQRGSRFQGFTPEG Sbjct: 1 MIDKLELLLALAKERHFGRAAEACGVTQPTMSTSIKQLEEILGVMLVQRGSRFQGFTPEG 60 Query: 61 ERTLDWARRIVGDTRAMKQEINSLKDKLSGEIRIAAIPTALGMVASLTTPFRARHPDVRF 120 ERTLDWARRIVGD RAM+QEIN LKDKLSGEIR+AA+PT LGMVASLTTPFRARHP+VRF Sbjct: 61 ERTLDWARRIVGDFRAMRQEINGLKDKLSGEIRLAAVPTVLGMVASLTTPFRARHPEVRF 120 Query: 121 RIQSCTSADVLGLLENLEVDAGLTYIENEPIGKVRTIPLYNESYRLLTAPDAMFGDRKQV 180 RI SCTSADVLGLLENLEVDAGLTYIENEPIG+VRTIPLYNESYRLLTAPD+MFGDR QV Sbjct: 121 RIMSCTSADVLGLLENLEVDAGLTYIENEPIGRVRTIPLYNESYRLLTAPDSMFGDRDQV 180 Query: 181 TWKEVGTVPLCLLTPDMQNRRIIDRALTSVGAEATPTLTSNSLLVLYTHVKTGRWASVMP 240 TW+EVG VPLCLLTPDMQNRRIIDRAL + G E TPTLTSNSLLVLYTHVKTGRWASVMP Sbjct: 181 TWQEVGQVPLCLLTPDMQNRRIIDRALRAAGNEVTPTLTSNSLLVLYTHVKTGRWASVMP 240 Query: 241 AKLAETLGLADAVRSIPIVDPVVDYSIGLVIPQRDPMTPLIAALVQVAREVAPTLES 297 AKLAETLGLAD VRSIPIVDPV++Y IGLVIPQRDPMTPLIAALVQVAREVAP+L++ Sbjct: 241 AKLAETLGLADKVRSIPIVDPVINYQIGLVIPQRDPMTPLIAALVQVAREVAPSLQA 297 >ref|YP_001206892.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL78675.1| putative transcriptional regulatory protein, LysR family [Bradyrhizobium sp. ORS 278] Length = 318 Score = 535 bits (1378), Expect = e-150, Method: Compositional matrix adjust. Identities = 268/297 (90%), Positives = 285/297 (95%) Query: 1 LIDKLELLLALAKERHFGRAAEACGVTQPTMSTSLKQLEEILGVMLVQRGSRFQGFTPEG 60 LIDKLELLLALAKERHFGRAAEACGVTQPTMSTS+KQLEEILGVMLVQRGSRFQGFTPEG Sbjct: 22 LIDKLELLLALAKERHFGRAAEACGVTQPTMSTSIKQLEEILGVMLVQRGSRFQGFTPEG 81 Query: 61 ERTLDWARRIVGDTRAMKQEINSLKDKLSGEIRIAAIPTALGMVASLTTPFRARHPDVRF 120 ERTLDWARRIVGD RAM+QEIN LKDKLSGEIR+AA+PT LGMVASLTTPFRA+HP+VRF Sbjct: 82 ERTLDWARRIVGDFRAMRQEINGLKDKLSGEIRLAAVPTVLGMVASLTTPFRAKHPEVRF 141 Query: 121 RIQSCTSADVLGLLENLEVDAGLTYIENEPIGKVRTIPLYNESYRLLTAPDAMFGDRKQV 180 RI SCTSADVLGLLENLEVDAGLTYIENEPIG+VRTIPLYNESYRLLTAPDAMFGDR QV Sbjct: 142 RIMSCTSADVLGLLENLEVDAGLTYIENEPIGRVRTIPLYNESYRLLTAPDAMFGDRDQV 201 Query: 181 TWKEVGTVPLCLLTPDMQNRRIIDRALTSVGAEATPTLTSNSLLVLYTHVKTGRWASVMP 240 TW+EVG VPLCLLTPDMQNRRIIDRAL + G E TPTLTSNSLLVLYTHVKTGRWASVMP Sbjct: 202 TWQEVGQVPLCLLTPDMQNRRIIDRALKAAGNEVTPTLTSNSLLVLYTHVKTGRWASVMP 261 Query: 241 AKLAETLGLADAVRSIPIVDPVVDYSIGLVIPQRDPMTPLIAALVQVAREVAPTLES 297 AKLAETLGLAD VRSIPI+DPV++Y IGLVIPQRDPMTPLIA+LVQ+AREVAP+L++ Sbjct: 262 AKLAETLGLADKVRSIPIIDPVINYQIGLVIPQRDPMTPLIASLVQIAREVAPSLQA 318 >ref|NP_769779.1| hypothetical protein blr3139 [Bradyrhizobium japonicum USDA 110] dbj|BAC48404.1| blr3139 [Bradyrhizobium japonicum USDA 110] Length = 297 Score = 535 bits (1377), Expect = e-150, Method: Compositional matrix adjust. Identities = 272/296 (91%), Positives = 284/296 (95%) Query: 1 LIDKLELLLALAKERHFGRAAEACGVTQPTMSTSLKQLEEILGVMLVQRGSRFQGFTPEG 60 +IDKLELLLALAKERHFGRAAEACGVTQPTMST LKQLEEILGVMLVQRGSRFQGFTPEG Sbjct: 1 MIDKLELLLALAKERHFGRAAEACGVTQPTMSTGLKQLEEILGVMLVQRGSRFQGFTPEG 60 Query: 61 ERTLDWARRIVGDTRAMKQEINSLKDKLSGEIRIAAIPTALGMVASLTTPFRARHPDVRF 120 ER LDWARRIVGD RAM+QEINSLKDKLSGEIRIAAIPT LGMVA+LTTPFRARHP+VRF Sbjct: 61 ERALDWARRIVGDARAMRQEINSLKDKLSGEIRIAAIPTVLGMVAALTTPFRARHPEVRF 120 Query: 121 RIQSCTSADVLGLLENLEVDAGLTYIENEPIGKVRTIPLYNESYRLLTAPDAMFGDRKQV 180 RIQS TS++VLGLLENLEVDAGLTYIENEPIGKVRTIPLYNESYRLLTAPDAMFGDR+ V Sbjct: 121 RIQSTTSSEVLGLLENLEVDAGLTYIENEPIGKVRTIPLYNESYRLLTAPDAMFGDRETV 180 Query: 181 TWKEVGTVPLCLLTPDMQNRRIIDRALTSVGAEATPTLTSNSLLVLYTHVKTGRWASVMP 240 TW EVG VPLCLLTPDMQNRRIIDRAL SVGAEATPTLTSNSLLVL+THVKTGRWASVMP Sbjct: 181 TWTEVGQVPLCLLTPDMQNRRIIDRALRSVGAEATPTLTSNSLLVLFTHVKTGRWASVMP 240 Query: 241 AKLAETLGLADAVRSIPIVDPVVDYSIGLVIPQRDPMTPLIAALVQVAREVAPTLE 296 AKLAETLGL+D VRSIPIVDP V+YSIG+VIPQRDPMTPLIAALV VAREVAPTL+ Sbjct: 241 AKLAETLGLSDTVRSIPIVDPEVNYSIGMVIPQRDPMTPLIAALVNVAREVAPTLQ 296 >ref|YP_534489.1| LysR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gb|ABD90170.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris BisB18] Length = 297 Score = 520 bits (1340), Expect = e-146, Method: Compositional matrix adjust. Identities = 260/297 (87%), Positives = 283/297 (95%) Query: 1 LIDKLELLLALAKERHFGRAAEACGVTQPTMSTSLKQLEEILGVMLVQRGSRFQGFTPEG 60 +IDKLELLLALAKERHFGRAAE+CGVTQPTMSTSLKQLEEILGVMLVQRGSRFQGFTPEG Sbjct: 1 MIDKLELLLALAKERHFGRAAESCGVTQPTMSTSLKQLEEILGVMLVQRGSRFQGFTPEG 60 Query: 61 ERTLDWARRIVGDTRAMKQEINSLKDKLSGEIRIAAIPTALGMVASLTTPFRARHPDVRF 120 ERTLDWARRIVGD R+M+QEI +LKD LSGEIRIAAIPT LGMVA+LTTPFRARHPDV+F Sbjct: 61 ERTLDWARRIVGDVRSMRQEIKTLKDGLSGEIRIAAIPTVLGMVAALTTPFRARHPDVKF 120 Query: 121 RIQSCTSADVLGLLENLEVDAGLTYIENEPIGKVRTIPLYNESYRLLTAPDAMFGDRKQV 180 RI SCTSA+VLGLLENLEVDAGLTYIENEP+GKVR++PLY+ESYRLLT+PD +FGDR +V Sbjct: 121 RIVSCTSAEVLGLLENLEVDAGLTYIENEPLGKVRSVPLYHESYRLLTSPDGLFGDRDEV 180 Query: 181 TWKEVGTVPLCLLTPDMQNRRIIDRALTSVGAEATPTLTSNSLLVLYTHVKTGRWASVMP 240 TW+EVG VPLCLLTPDMQNRRIIDRAL +VG EA PTLTSNS++VLYTHVKTGRWASVMP Sbjct: 181 TWREVGQVPLCLLTPDMQNRRIIDRALKAVGTEAKPTLTSNSIIVLYTHVKTGRWASVMP 240 Query: 241 AKLAETLGLADAVRSIPIVDPVVDYSIGLVIPQRDPMTPLIAALVQVAREVAPTLES 297 AKLAETLG +DAVRSIPIVDPVV YSIGLV+P R+P+TPLIAALVQVAREVAPTLES Sbjct: 241 AKLAETLGFSDAVRSIPIVDPVVSYSIGLVVPPREPLTPLIAALVQVAREVAPTLES 297 >ref|ZP_08628771.1| hydrogen peroxide response regulator [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08576.1| hydrogen peroxide response regulator [Bradyrhizobiaceae bacterium SG-6C] Length = 297 Score = 515 bits (1326), Expect = e-144, Method: Compositional matrix adjust. Identities = 262/297 (88%), Positives = 276/297 (92%) Query: 1 LIDKLELLLALAKERHFGRAAEACGVTQPTMSTSLKQLEEILGVMLVQRGSRFQGFTPEG 60 +IDKLELLLALAKERHFGRAAE CGVTQPTMSTSLKQLEEILGVMLVQRGSRF GFTPEG Sbjct: 1 MIDKLELLLALAKERHFGRAAEVCGVTQPTMSTSLKQLEEILGVMLVQRGSRFVGFTPEG 60 Query: 61 ERTLDWARRIVGDTRAMKQEINSLKDKLSGEIRIAAIPTALGMVASLTTPFRARHPDVRF 120 ER LDWARRIVGDTRAMKQEINSLKD L+GEIRIAAIPT LGMVASLTTPFRARHP+VRF Sbjct: 61 ERALDWARRIVGDTRAMKQEINSLKDGLTGEIRIAAIPTVLGMVASLTTPFRARHPNVRF 120 Query: 121 RIQSCTSADVLGLLENLEVDAGLTYIENEPIGKVRTIPLYNESYRLLTAPDAMFGDRKQV 180 RI SCTS+DVLGLLENLEVDAGLTYIENEP+GKVRT PLY ESYRLLT+PD MFGDR QV Sbjct: 121 RIVSCTSSDVLGLLENLEVDAGLTYIENEPVGKVRTTPLYRESYRLLTSPDGMFGDRDQV 180 Query: 181 TWKEVGTVPLCLLTPDMQNRRIIDRALTSVGAEATPTLTSNSLLVLYTHVKTGRWASVMP 240 TWK+VG VPLCLLTPDMQNRRIIDRAL G EATPTLTSNS++VLYTHVKTGRW+SVMP Sbjct: 181 TWKDVGQVPLCLLTPDMQNRRIIDRALREAGTEATPTLTSNSIIVLYTHVKTGRWSSVMP 240 Query: 241 AKLAETLGLADAVRSIPIVDPVVDYSIGLVIPQRDPMTPLIAALVQVAREVAPTLES 297 AKLAETLGL+DAVR IPIVDP+V YSIGLV RDPMTPLIA LVQ+AR+VAPTLES Sbjct: 241 AKLAETLGLSDAVRIIPIVDPLVTYSIGLVTSPRDPMTPLIAELVQIARDVAPTLES 297