BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0248.0029.p (152 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001239115.1| formate dehydrogenase subunit gamma [Bradyrh... 259 1e-67 ref|YP_001206893.1| formate dehydrogenase subunit gamma [Bradyrh... 256 1e-66 ref|ZP_08628772.1| NAD-dependent formate dehydrogenase gamma sub... 251 3e-65 ref|NP_769778.1| formate dehydrogenase subunit gamma [Bradyrhizo... 244 3e-63 ref|YP_534488.1| formate dehydrogenase subunit gamma [Rhodopseud... 233 8e-60 >ref|YP_001239115.1| formate dehydrogenase subunit gamma [Bradyrhizobium sp. BTAi1] gb|ABQ35209.1| formate dehydrogenase gamma subunit [Bradyrhizobium sp. BTAi1] Length = 158 Score = 259 bits (661), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 129/158 (81%), Positives = 141/158 (89%), Gaps = 6/158 (3%) Query: 1 MTVGYEAWDKARGAEIIAEHAGLEGATLVMLHALQEAFGYVPEPAIPMVAEALNLSRAEV 60 MT YE W+ ARGAEIIAEH+ +EGATL +LHALQEAFGYVPE AIPM+A ALNLSRAEV Sbjct: 1 MTPVYETWETARGAEIIAEHSKMEGATLPILHALQEAFGYVPEEAIPMIATALNLSRAEV 60 Query: 61 HGVFTFYHDFRKQPAGRHVLKLCR------AGGDRLAARAEARLGVALGNTTADDRVTLE 114 +GVFTFYHDFR + AGRHVLKLCR AGGD LAARAEA+LG+ALGNTTAD+RVTLE Sbjct: 61 YGVFTFYHDFRAKKAGRHVLKLCRAEACQAAGGDALAARAEAKLGIALGNTTADERVTLE 120 Query: 115 PIYCLGLCATAPSAMLDGRVVGRLDEARIDALVAEAQR 152 PIYCLGLCATAPSAMLDGR+VGRLDEARIDALV+EAQR Sbjct: 121 PIYCLGLCATAPSAMLDGRLVGRLDEARIDALVSEAQR 158 >ref|YP_001206893.1| formate dehydrogenase subunit gamma [Bradyrhizobium sp. ORS 278] emb|CAL78676.1| putative formate dehydrogenase gamma subunit [Bradyrhizobium sp. ORS 278] Length = 158 Score = 256 bits (653), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 126/158 (79%), Positives = 140/158 (88%), Gaps = 6/158 (3%) Query: 1 MTVGYEAWDKARGAEIIAEHAGLEGATLVMLHALQEAFGYVPEPAIPMVAEALNLSRAEV 60 MT YE+WD ARGAEIIAEH+ +EGATL +LHALQE FGYVPE AIPM+A LNLSRAEV Sbjct: 1 MTPVYESWDAARGAEIIAEHSQMEGATLPILHALQETFGYVPEDAIPMIASTLNLSRAEV 60 Query: 61 HGVFTFYHDFRKQPAGRHVLKLCR------AGGDRLAARAEARLGVALGNTTADDRVTLE 114 +GVFTFYHDFR + AGRHVLKLCR AGGD LAARAEA+LG+A+GNTTAD+RVTLE Sbjct: 61 YGVFTFYHDFRGKKAGRHVLKLCRAEACQAAGGDALAARAEAKLGIAMGNTTADERVTLE 120 Query: 115 PIYCLGLCATAPSAMLDGRVVGRLDEARIDALVAEAQR 152 PIYCLGLCATAPSAM+DGR+VGRLDEARIDALV+EAQR Sbjct: 121 PIYCLGLCATAPSAMIDGRLVGRLDEARIDALVSEAQR 158 >ref|ZP_08628772.1| NAD-dependent formate dehydrogenase gamma subunit [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08577.1| NAD-dependent formate dehydrogenase gamma subunit [Bradyrhizobiaceae bacterium SG-6C] Length = 158 Score = 251 bits (641), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 124/158 (78%), Positives = 135/158 (85%), Gaps = 6/158 (3%) Query: 1 MTVGYEAWDKARGAEIIAEHAGLEGATLVMLHALQEAFGYVPEPAIPMVAEALNLSRAEV 60 M YEAW+ RGAEIIA H LEG T+V+LHA+QEAFGYVPEP IPM+A+ALNLSRAEV Sbjct: 1 MPSAYEAWNAERGAEIIAAHKDLEGPTIVILHAIQEAFGYVPEPVIPMIADALNLSRAEV 60 Query: 61 HGVFTFYHDFRKQPAGRHVLKLCR------AGGDRLAARAEARLGVALGNTTADDRVTLE 114 HGVFTFYHDFR +PAGRHVLKLCR AGGD LAA AE +LGVA+GNTTAD RVTLE Sbjct: 61 HGVFTFYHDFRHKPAGRHVLKLCRAEACQAAGGDALAAHAERKLGVAIGNTTADGRVTLE 120 Query: 115 PIYCLGLCATAPSAMLDGRVVGRLDEARIDALVAEAQR 152 PIYCLGLCATAPSAMLDGRVVGRLD R+DALV+EAQR Sbjct: 121 PIYCLGLCATAPSAMLDGRVVGRLDTKRLDALVSEAQR 158 >ref|NP_769778.1| formate dehydrogenase subunit gamma [Bradyrhizobium japonicum USDA 110] dbj|BAC48403.1| NADH dehydrogenase I chain E [Bradyrhizobium japonicum USDA 110] Length = 162 Score = 244 bits (623), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 132/154 (85%), Positives = 139/154 (90%), Gaps = 6/154 (3%) Query: 5 YEAWDKARGAEIIAEHAGLEGATLVMLHALQEAFGYVPEPAIPMVAEALNLSRAEVHGVF 64 YE WD+ RGAEIIAEHA EGATLV+LHALQ AFGYVPE AIPMVA+ALNLSRAEVHGVF Sbjct: 9 YEPWDETRGAEIIAEHARQEGATLVILHALQAAFGYVPEAAIPMVAQALNLSRAEVHGVF 68 Query: 65 TFYHDFRKQPAGRHVLKLCR------AGGDRLAARAEARLGVALGNTTADDRVTLEPIYC 118 TFYHDFR +PAGRHVLKLCR AGGD LAARAEARLGV+LGNTTADDRVTLEPIYC Sbjct: 69 TFYHDFRHKPAGRHVLKLCRAEACQAAGGDALAARAEARLGVSLGNTTADDRVTLEPIYC 128 Query: 119 LGLCATAPSAMLDGRVVGRLDEARIDALVAEAQR 152 LGLCATAPSAMLDGR+VGRLDE R+DALVAEAQR Sbjct: 129 LGLCATAPSAMLDGRLVGRLDEKRLDALVAEAQR 162 >ref|YP_534488.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris BisB18] gb|ABD90169.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas palustris BisB18] Length = 158 Score = 233 bits (593), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 117/158 (74%), Positives = 129/158 (81%), Gaps = 6/158 (3%) Query: 1 MTVGYEAWDKARGAEIIAEHAGLEGATLVMLHALQEAFGYVPEPAIPMVAEALNLSRAEV 60 M + YEAWD R AEIIAE EGATLV+LHALQEAFGYVP+ AIPM+A ALNLSRAEV Sbjct: 1 MALAYEAWDSERAAEIIAELKSHEGATLVILHALQEAFGYVPQDAIPMIALALNLSRAEV 60 Query: 61 HGVFTFYHDFRKQPAGRHVLKLC------RAGGDRLAARAEARLGVALGNTTADDRVTLE 114 HGVFTFYHDFRK PAGRHVLKLC AGGD LAARAE LG+A+G T D V+LE Sbjct: 61 HGVFTFYHDFRKVPAGRHVLKLCLAEACQSAGGDALAARAETTLGMAVGETRGDGVVSLE 120 Query: 115 PIYCLGLCATAPSAMLDGRVVGRLDEARIDALVAEAQR 152 P+YCLGLCATAPSAMLDGR++GRLD R+DAL+AEAQR Sbjct: 121 PVYCLGLCATAPSAMLDGRLIGRLDATRLDALLAEAQR 158