BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0248.0028.p (522 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769777.1| NADH dehydrogenase I chain F [Bradyrhizobium ja... 919 0.0 ref|ZP_08628773.1| NAD-dependent formate dehydrogenase beta subu... 881 0.0 ref|YP_001239114.1| putative formate dehydrogenase subunit beta ... 860 0.0 ref|YP_001206894.1| putative formate dehydrogenase subunit beta ... 856 0.0 ref|YP_001989837.1| NADH dehydrogenase (quinone) [Rhodopseudomon... 817 0.0 >ref|NP_769777.1| NADH dehydrogenase I chain F [Bradyrhizobium japonicum USDA 110] dbj|BAC48402.1| NADH dehydrogenase I chain F [Bradyrhizobium japonicum USDA 110] Length = 518 Score = 919 bits (2376), Expect = 0.0, Method: Compositional matrix adjust. Identities = 446/522 (85%), Positives = 483/522 (92%), Gaps = 4/522 (0%) Query: 1 MTMRIFIARDAGAVAVGADDVALAFEQAAAARGTPLEIVRTGSRGLYWLEPMVELATAQG 60 M+MR+F++RDAGA+AVGAD+VALA EQAAA RG +EI+RTGSRG+YWLEP+VE+AT QG Sbjct: 1 MSMRLFVSRDAGALAVGADEVALALEQAAAKRGVAVEIIRTGSRGMYWLEPLVEVATPQG 60 Query: 61 RVAFGPISPADVPSLLDAMAGSGQHALRLGVTDELPWLKRQTRLTFARCGVIDPRSVDDY 120 R+AFGP++ DVPSLLDA+A + H LRLG TDE+PWLKRQTRLTFARCGVIDPRS++DY Sbjct: 61 RIAFGPVTETDVPSLLDALASNTPHLLRLGATDEIPWLKRQTRLTFARCGVIDPRSLEDY 120 Query: 121 RAHGGYKGLERALTLTSDQILADVTTSGLRGRGGAGFPTGIKWKTVAQASADRKYIVCNA 180 RAHGGYKGLERAL+L S+ IL +VT SGLRGRGGAGFPTGIKWKTVAQA ADRK+IVCNA Sbjct: 121 RAHGGYKGLERALSLGSEAILTEVTASGLRGRGGAGFPTGIKWKTVAQAKADRKFIVCNA 180 Query: 181 DEGDSGTFADRMIMEGDPFVVIEGMTIAGITVGANKGYIYIRSEYPHAVEAMNAAIVAAR 240 DEGDSGTFADRMIMEGDPF+VIEGMT AGITVGA KGYIYIRSEYPHAVEAM AAI AA+ Sbjct: 181 DEGDSGTFADRMIMEGDPFLVIEGMTTAGITVGATKGYIYIRSEYPHAVEAMKAAIQAAK 240 Query: 241 RAGVLGKRIGGSAHEFDLEVRVGAGAYVCGEETSLLESLEGRRGIVRAKPPLPAHKGLFG 300 R G LG +IGGS + FDLEVRVGAGAYVCGEETSLLESLEGRRGIVRAKPPLPAH GLFG Sbjct: 241 RGGYLGDKIGGSTYSFDLEVRVGAGAYVCGEETSLLESLEGRRGIVRAKPPLPAHHGLFG 300 Query: 301 RPSVINNVLSFAAIPFILDNGAKAYADFGMGRSRGTMPIQLAGNIKYGGLFETAFGVTLG 360 +P+VINNVLSFAAIPFIL GAKAYADFGMGRSRGTMPIQLAGNI++GGL+ETAFGVTLG Sbjct: 301 KPTVINNVLSFAAIPFILAEGAKAYADFGMGRSRGTMPIQLAGNIRHGGLYETAFGVTLG 360 Query: 361 ELVDEIGGGTFTGREVRAVQVGGPLGAYFPRALFDTPFDYEAFAARDGLIGHGGIVVFDD 420 ELVD+IGGGTFTGR VRAVQVGGPLGAYFPRALFDTPFDYEAFAARDGLIGHGGIVVFDD Sbjct: 361 ELVDDIGGGTFTGRPVRAVQVGGPLGAYFPRALFDTPFDYEAFAARDGLIGHGGIVVFDD 420 Query: 421 SVDMAKQARFAMEFCAVESCGKCTPCRIGSTRGVETINKIINGERVAENLAVVEDLCNTM 480 SVDM +QARFAMEFCAVESCGKCTPCRIGSTRGVETI KIINGERV+ENLA+VEDLCNTM Sbjct: 421 SVDMRRQARFAMEFCAVESCGKCTPCRIGSTRGVETIEKIINGERVSENLALVEDLCNTM 480 Query: 481 KFGSLCALGGFTPYPVMSALKHFREDFGGDLGPAPAHLQAAE 522 KFGSLCALGGFTPYPV+SALKHFREDF PAP LQAAE Sbjct: 481 KFGSLCALGGFTPYPVLSALKHFREDF----VPAPTTLQAAE 518 >ref|ZP_08628773.1| NAD-dependent formate dehydrogenase beta subunit [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08578.1| NAD-dependent formate dehydrogenase beta subunit [Bradyrhizobiaceae bacterium SG-6C] Length = 517 Score = 881 bits (2277), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/522 (81%), Positives = 474/522 (90%), Gaps = 5/522 (0%) Query: 1 MTMRIFIARDAGAVAVGADDVALAFEQAAAARGTPLEIVRTGSRGLYWLEPMVELATAQG 60 MT+R +++RDAGAVAVGAD+VALA E AA R +EIVRTGSRGLYWLEPM+E+ATAQG Sbjct: 1 MTLRFYVSRDAGAVAVGADEVALALETLAADRNVAVEIVRTGSRGLYWLEPMIEVATAQG 60 Query: 61 RVAFGPISPADVPSLLDAMAGSGQHALRLGVTDELPWLKRQTRLTFARCGVIDPRSVDDY 120 R+AFGP++ DV S+L+A++ + H LRLG+TDE+PWLKRQTRLTFARCGVIDPRSV+DY Sbjct: 61 RIAFGPVTVEDVASVLEAVSSNSAHPLRLGITDEIPWLKRQTRLTFARCGVIDPRSVEDY 120 Query: 121 RAHGGYKGLERALTLTSDQILADVTTSGLRGRGGAGFPTGIKWKTVAQASADRKYIVCNA 180 RAH GYKGL+RALTL SD ILADV TSGLRGRGGAGFPT IKW TVAQ +AD+KYIVCNA Sbjct: 121 RAHDGYKGLDRALTLGSDGILADVKTSGLRGRGGAGFPTAIKWATVAQTTADQKYIVCNA 180 Query: 181 DEGDSGTFADRMIMEGDPFVVIEGMTIAGITVGANKGYIYIRSEYPHAVEAMNAAIVAAR 240 DEGDSGTFADRMIMEGDPFVVIEGMTIAG+ VGA +GYIYIRSEYPHAVEAMNAAIVAAR Sbjct: 181 DEGDSGTFADRMIMEGDPFVVIEGMTIAGVAVGATRGYIYIRSEYPHAVEAMNAAIVAAR 240 Query: 241 RAGVLGKRIGGSAHEFDLEVRVGAGAYVCGEETSLLESLEGRRGIVRAKPPLPAHKGLFG 300 +AG LGK +GGS + FD+EVRVGAGAYVCGEETSLLESLEGRRG+VRAKPPLPAH GLFG Sbjct: 241 KAGYLGKSVGGSKYAFDVEVRVGAGAYVCGEETSLLESLEGRRGLVRAKPPLPAHHGLFG 300 Query: 301 RPSVINNVLSFAAIPFILDNGAKAYADFGMGRSRGTMPIQLAGNIKYGGLFETAFGVTLG 360 +P+VINNVLSFAAIP IL+ GA+AYADFGMGRSRGTMPIQLAGNIK GGLFE AFG+TLG Sbjct: 301 KPTVINNVLSFAAIPLILNGGAQAYADFGMGRSRGTMPIQLAGNIKNGGLFEVAFGITLG 360 Query: 361 ELVDEIGGGTFTGREVRAVQVGGPLGAYFPRALFDTPFDYEAFAARDGLIGHGGIVVFDD 420 EL+D++GGGT +GR VRAVQVGGPLGAYFPRALFDTPFDYEAFAARDGLIGHGGIVVFDD Sbjct: 361 ELIDDVGGGTASGRPVRAVQVGGPLGAYFPRALFDTPFDYEAFAARDGLIGHGGIVVFDD 420 Query: 421 SVDMAKQARFAMEFCAVESCGKCTPCRIGSTRGVETINKIINGERVAENLAVVEDLCNTM 480 +VDM+KQARFAMEFCA+ESCGKCTPCRIGSTRGVETI+KI G++ A N+AV+EDLC+TM Sbjct: 421 TVDMSKQARFAMEFCAIESCGKCTPCRIGSTRGVETIDKIRAGDKGAANIAVLEDLCHTM 480 Query: 481 KFGSLCALGGFTPYPVMSALKHFREDFGGDLGPAPAHLQAAE 522 KFGSLCALGGFTPYPVMSALKHF EDFG A LQAAE Sbjct: 481 KFGSLCALGGFTPYPVMSALKHFPEDFG-----ATPRLQAAE 517 >ref|YP_001239114.1| putative formate dehydrogenase subunit beta [Bradyrhizobium sp. BTAi1] gb|ABQ35208.1| formate dehydrogenase beta subunit [Bradyrhizobium sp. BTAi1] Length = 518 Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/522 (78%), Positives = 463/522 (88%), Gaps = 4/522 (0%) Query: 1 MTMRIFIARDAGAVAVGADDVALAFEQAAAARGTPLEIVRTGSRGLYWLEPMVELATAQG 60 M++R+F+ DAGA+AVGAD+VA A +AA RG +EIVR GSRGLYWLEP+VEL TAQG Sbjct: 1 MSVRLFVPCDAGALAVGADEVAQALHKAALERGAEVEIVRNGSRGLYWLEPLVELETAQG 60 Query: 61 RVAFGPISPADVPSLLDAMAGSGQHALRLGVTDELPWLKRQTRLTFARCGVIDPRSVDDY 120 R FGP++ D PSLLDA+ H L LG+T+E+PWLKRQTRLTFARCG++DP S+DDY Sbjct: 61 RFGFGPVTADDAPSLLDAIIADKPHKLSLGLTEEIPWLKRQTRLTFARCGIVDPLSLDDY 120 Query: 121 RAHGGYKGLERALTLTSDQILADVTTSGLRGRGGAGFPTGIKWKTVAQASADRKYIVCNA 180 RAHGGYKGL RALTLT D ++A+VTTSGLRGRGGAGFPTGIKWKTV+Q +ADRKY++CNA Sbjct: 121 RAHGGYKGLTRALTLTPDAVIAEVTTSGLRGRGGAGFPTGIKWKTVSQTAADRKYVICNA 180 Query: 181 DEGDSGTFADRMIMEGDPFVVIEGMTIAGITVGANKGYIYIRSEYPHAVEAMNAAIVAAR 240 DEGDSGTFADRM+MEGDPFV+IEGMTI GI VGA KGYIY RSEYPHA+ M AI A+ Sbjct: 181 DEGDSGTFADRMLMEGDPFVLIEGMTICGIAVGATKGYIYTRSEYPHAIATMAKAIEIAK 240 Query: 241 RAGVLGKRIGGSAHEFDLEVRVGAGAYVCGEETSLLESLEGRRGIVRAKPPLPAHKGLFG 300 +AG+LG +I GS + FDLEVR GAGAYVCGEET+L+ESLEG+RG+VRAKPPLPAH GLFG Sbjct: 241 KAGLLGDKIAGSNYTFDLEVRTGAGAYVCGEETALMESLEGKRGVVRAKPPLPAHHGLFG 300 Query: 301 RPSVINNVLSFAAIPFILDNGAKAYADFGMGRSRGTMPIQLAGNIKYGGLFETAFGVTLG 360 +P+V+NN+LSFAAIPFILD GAKAYADFGMGRSRGTMPIQ+AGN+K+GGLFETAFG+TLG Sbjct: 301 KPTVVNNLLSFAAIPFILDEGAKAYADFGMGRSRGTMPIQIAGNVKFGGLFETAFGITLG 360 Query: 361 ELVDEIGGGTFTGREVRAVQVGGPLGAYFPRALFDTPFDYEAFAARDGLIGHGGIVVFDD 420 ELVD+IGGGTFTGR VRAVQVGGPLGAYFPRALFDTPFDYEAFAA+DGLIGHGGIVVFDD Sbjct: 361 ELVDDIGGGTFTGRPVRAVQVGGPLGAYFPRALFDTPFDYEAFAAKDGLIGHGGIVVFDD 420 Query: 421 SVDMAKQARFAMEFCAVESCGKCTPCRIGSTRGVETINKIINGERVAENLAVVEDLCNTM 480 +VDM+KQARFAMEFCA+ESCGKCTPCRIGSTRG ETI+KI GERVAEN+A+VEDLC TM Sbjct: 421 TVDMSKQARFAMEFCAIESCGKCTPCRIGSTRGAETIDKIRRGERVAENIALVEDLCGTM 480 Query: 481 KFGSLCALGGFTPYPVMSALKHFREDFGGDLGPAPAHLQAAE 522 K GSLCALGGFTPYPV+SALKHFREDF GP LQAAE Sbjct: 481 KLGSLCALGGFTPYPVLSALKHFREDF----GPQQPRLQAAE 518 >ref|YP_001206894.1| putative formate dehydrogenase subunit beta [Bradyrhizobium sp. ORS 278] emb|CAL78677.1| Putative formate dehydrogenase beta subunit [Bradyrhizobium sp. ORS 278] Length = 518 Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/522 (78%), Positives = 463/522 (88%), Gaps = 4/522 (0%) Query: 1 MTMRIFIARDAGAVAVGADDVALAFEQAAAARGTPLEIVRTGSRGLYWLEPMVELATAQG 60 MT+R+F+ DAGA+AVGAD+VA A +AA R +EIVR GSRGLYWLEP+VEL TAQG Sbjct: 1 MTLRLFVPCDAGALAVGADEVAHALHKAALERKLDVEIVRNGSRGLYWLEPLVELETAQG 60 Query: 61 RVAFGPISPADVPSLLDAMAGSGQHALRLGVTDELPWLKRQTRLTFARCGVIDPRSVDDY 120 R FGP++ DVPSLLDA+ H L LG+T+E+PWLKRQTRLTFARCG+IDP S++DY Sbjct: 61 RFGFGPVTADDVPSLLDAIIDDKSHKLSLGLTEEIPWLKRQTRLTFARCGIIDPLSLEDY 120 Query: 121 RAHGGYKGLERALTLTSDQILADVTTSGLRGRGGAGFPTGIKWKTVAQASADRKYIVCNA 180 RAHGGYKGL RALTL+ D ++A+VTTSGLRGRGGAGFPTGIKWKTV+Q +ADRKY++CNA Sbjct: 121 RAHGGYKGLTRALTLSPDAVIAEVTTSGLRGRGGAGFPTGIKWKTVSQTAADRKYVICNA 180 Query: 181 DEGDSGTFADRMIMEGDPFVVIEGMTIAGITVGANKGYIYIRSEYPHAVEAMNAAIVAAR 240 DEGDSGTFADRM+MEGDPFV+IEGMTI GI VGA KGYIY RSEYPHA+ M AI A+ Sbjct: 181 DEGDSGTFADRMLMEGDPFVLIEGMTICGIAVGATKGYIYTRSEYPHAIATMTKAIDIAK 240 Query: 241 RAGVLGKRIGGSAHEFDLEVRVGAGAYVCGEETSLLESLEGRRGIVRAKPPLPAHKGLFG 300 +AG+LG +I GS + F+LEVR GAGAYVCGEET+L+ESLEG+RGIVRAKPPLPAH GLFG Sbjct: 241 KAGLLGDKISGSNYTFELEVRTGAGAYVCGEETALMESLEGKRGIVRAKPPLPAHHGLFG 300 Query: 301 RPSVINNVLSFAAIPFILDNGAKAYADFGMGRSRGTMPIQLAGNIKYGGLFETAFGVTLG 360 +P+V+NN+LSFAAIPFILD GAKAYADFGMGRSRGTMPIQ+AGN+K+GGLFETAFG+TLG Sbjct: 301 KPTVVNNLLSFAAIPFILDEGAKAYADFGMGRSRGTMPIQIAGNVKFGGLFETAFGITLG 360 Query: 361 ELVDEIGGGTFTGREVRAVQVGGPLGAYFPRALFDTPFDYEAFAARDGLIGHGGIVVFDD 420 ELVD+IGGGTFTGR VRAVQVGGPLGAYFPRALFDTPFDYEAFAA++GLIGHGGIVVFDD Sbjct: 361 ELVDDIGGGTFTGRPVRAVQVGGPLGAYFPRALFDTPFDYEAFAAKEGLIGHGGIVVFDD 420 Query: 421 SVDMAKQARFAMEFCAVESCGKCTPCRIGSTRGVETINKIINGERVAENLAVVEDLCNTM 480 +VDM+KQARFAMEFCA+ESCGKCTPCRIGSTRG ETI+KI GERVAEN+A+VEDLC TM Sbjct: 421 TVDMSKQARFAMEFCAIESCGKCTPCRIGSTRGAETIDKIRRGERVAENIALVEDLCGTM 480 Query: 481 KFGSLCALGGFTPYPVMSALKHFREDFGGDLGPAPAHLQAAE 522 K GSLCALGGFTPYPV+SALKHFREDF GP LQAAE Sbjct: 481 KLGSLCALGGFTPYPVLSALKHFREDF----GPQQPRLQAAE 518 >ref|YP_001989837.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris TIE-1] gb|ACE99361.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris TIE-1] Length = 518 Score = 817 bits (2110), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/522 (76%), Positives = 459/522 (87%), Gaps = 4/522 (0%) Query: 1 MTMRIFIARDAGAVAVGADDVALAFEQAAAARGTPLEIVRTGSRGLYWLEPMVELATAQG 60 M++R+FI RD+GA+AVGAD+VA A + A AR P+++VR GSRGLYWLEPM+E+ T +G Sbjct: 1 MSLRVFIPRDSGALAVGADEVAAALLEQAHARDLPVDLVRPGSRGLYWLEPMLEVDTPEG 60 Query: 61 RVAFGPISPADVPSLLDAMAGSGQHALRLGVTDELPWLKRQTRLTFARCGVIDPRSVDDY 120 RVA+GP++PADVPSLLDA+ G H+LR G+T+E+PWLKRQTRLTFARCG++DPRS+DDY Sbjct: 61 RVAYGPVTPADVPSLLDAIVAGGPHSLRQGLTEEIPWLKRQTRLTFARCGIVDPRSIDDY 120 Query: 121 RAHGGYKGLERALTLTSDQILADVTTSGLRGRGGAGFPTGIKWKTVAQASADRKYIVCNA 180 RAHGGY+GLERAL ++SD I+ DV SGLRGRGGAGFPTG KW+TVAQA +KYI CNA Sbjct: 121 RAHGGYRGLERALKMSSDAIIDDVVKSGLRGRGGAGFPTGTKWRTVAQAGRGQKYICCNA 180 Query: 181 DEGDSGTFADRMIMEGDPFVVIEGMTIAGITVGANKGYIYIRSEYPHAVEAMNAAIVAAR 240 DEGDSGTFADRM+MEGDPF++IEGMTIAGI VGA +GYIYIRSEYPHAVEAMNAAI AAR Sbjct: 181 DEGDSGTFADRMLMEGDPFMIIEGMTIAGIAVGATRGYIYIRSEYPHAVEAMNAAIEAAR 240 Query: 241 RAGVLGKRIGGSAHEFDLEVRVGAGAYVCGEETSLLESLEGRRGIVRAKPPLPAHKGLFG 300 R G LG+ I S FD+EVRVGAGAY+CGEETS+LESLEG+RG VRAKPPLPAHKGLFG Sbjct: 241 RTGYLGEHICHSTDSFDIEVRVGAGAYICGEETSMLESLEGKRGTVRAKPPLPAHKGLFG 300 Query: 301 RPSVINNVLSFAAIPFILDNGAKAYADFGMGRSRGTMPIQLAGNIKYGGLFETAFGVTLG 360 RP+VINNVL+F+A+P+ILD GA+AYAD GMG+SRGT PIQL GNIK+GGLFE AFG+TLG Sbjct: 301 RPTVINNVLTFSAVPYILDGGAQAYADCGMGKSRGTKPIQLGGNIKHGGLFEVAFGITLG 360 Query: 361 ELVDEIGGGTFTGREVRAVQVGGPLGAYFPRALFDTPFDYEAFAARDGLIGHGGIVVFDD 420 ELVDEIGGGT +GR VRAVQVGGPLGAYFPRALFDTPFDYEAFAAR G++GHGG+VVFDD Sbjct: 361 ELVDEIGGGTLSGRPVRAVQVGGPLGAYFPRALFDTPFDYEAFAARSGMVGHGGVVVFDD 420 Query: 421 SVDMAKQARFAMEFCAVESCGKCTPCRIGSTRGVETINKIINGERVAENLAVVEDLCNTM 480 +VDMAKQARFAMEFCA ESCGKCTPCRIGSTRG ET++KII G+R A N+AV+EDLCNTM Sbjct: 421 TVDMAKQARFAMEFCAHESCGKCTPCRIGSTRGAETVDKIIAGDRPAANIAVLEDLCNTM 480 Query: 481 KFGSLCALGGFTPYPVMSALKHFREDFGGDLGPAPAHLQAAE 522 KFGSLCALGG P PV+SAL HF EDF G AP LQAAE Sbjct: 481 KFGSLCALGGLAPIPVLSALTHFPEDF----GLAPRRLQAAE 518