BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0248.0022.p (484 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001204792.1| putative two-component sensor histidine kina... 792 0.0 ref|NP_769772.1| two-component sensor histidine kinase [Bradyrhi... 789 0.0 ref|YP_531723.1| periplasmic sensor signal transduction histidin... 775 0.0 ref|YP_001239109.1| putative two-component sensor histidine kina... 771 0.0 ref|YP_569149.1| periplasmic sensor signal transduction histidin... 762 0.0 >ref|YP_001204792.1| putative two-component sensor histidine kinase [Bradyrhizobium sp. ORS 278] emb|CAL76555.1| putative two-component sensor histidine kinase; putative heavy-metal sensor (Cu/Zn) [Bradyrhizobium sp. ORS 278] Length = 486 Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/486 (83%), Positives = 438/486 (90%), Gaps = 2/486 (0%) Query: 1 VTAFGKLIRTTAFRLTLVYLFLFALFAASLLAYFAWNTRRLITEQITTTVNVEISEITDI 60 +TAFGKLIRTTAFRLTLVYL LFALFAASLL YFAWNTRRLITEQI+TTV+ EI E+TDI Sbjct: 1 MTAFGKLIRTTAFRLTLVYLLLFALFAASLLGYFAWNTRRLITEQISTTVSSEIGEMTDI 60 Query: 61 YNRRGLRGLLGTMGNRALRPGANLYLVTAPNGQMLAGNVGALAPGVMSTQGWTETAYRRL 120 Y R GLR ++GT+ +RALRPGANLYL+T P GQ +AGNV ALAPGVM + GW+ET YRRL Sbjct: 61 YTRGGLRWIVGTIQSRALRPGANLYLLTTPTGQQVAGNVDALAPGVMGSSGWSETFYRRL 120 Query: 121 DDQDKTDHRALVRVTQMDNGFRLLVGRDLEERRRLFGIVAKAAQWSILVVVVLGIGGGIF 180 DD + +HRALV VTQ+ +GFRLL+GRDLEERRRLFGIVAKAAQWS+LVV+VLGIGGGIF Sbjct: 121 DDSSEQNHRALVYVTQLSSGFRLLIGRDLEERRRLFGIVAKAAQWSVLVVIVLGIGGGIF 180 Query: 181 VARRVLHRIDAMTGTTKRIMAGDLSGRLPVGRSGDELDRLAENLNAMLERIEALMTGLKE 240 VARRVL+RIDAMTGTT+RIMAGDLSGRLPVGRSGDELDRLAENLNAMLERIEALMTGLKE Sbjct: 181 VARRVLYRIDAMTGTTQRIMAGDLSGRLPVGRSGDELDRLAENLNAMLERIEALMTGLKE 240 Query: 241 VSDNIAHDLKTPLTRLRNRAEEALARSGCEADYRAALERTIEESDGLIRTFNALLMIARA 300 VSDNIAHDLKTPLTRLRNRAEEALA+S E +YRAALERTIEESDGLIRTFNALLMIARA Sbjct: 241 VSDNIAHDLKTPLTRLRNRAEEALAKSRSEDEYRAALERTIEESDGLIRTFNALLMIARA 300 Query: 301 ESGQARGNMDDFDGADVANGIHELYEPLAEDDGMTLQVKTVPAPIHGNRELISQAVANLV 360 ESGQARG+M +FD ADVA GIHELYEPLAED+ MTL+VK AP+HGNRELISQA+ANLV Sbjct: 301 ESGQARGDMVEFDAADVAGGIHELYEPLAEDNEMTLRVKASAAPVHGNRELISQALANLV 360 Query: 361 ENAIKYGKPDASVQPLNAD--AREILIEAQREGDQVLLSVTDHGPGIPEADRKHAVERFV 418 ENAIKYGKP A A +REILIEA+REG QVLLSVTDHG GIPEA+RKHAVERFV Sbjct: 361 ENAIKYGKPAALPLDPAAAAGSREILIEARREGGQVLLSVTDHGEGIPEAERKHAVERFV 420 Query: 419 RLEASRTLPGSGLGLSLASAVATLHGGELRLGDAHPGLVATLVLPARAGGSDRLAAQTQD 478 RLEASRTLPGSGLGLSLASAVATLHGGELRLGDA PGL+ATLVLPA AG +LAA TQD Sbjct: 421 RLEASRTLPGSGLGLSLASAVATLHGGELRLGDARPGLIATLVLPAGAGQPAKLAAPTQD 480 Query: 479 VPQKAA 484 VPQKAA Sbjct: 481 VPQKAA 486 >ref|NP_769772.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] dbj|BAC48397.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] Length = 486 Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/486 (84%), Positives = 442/486 (90%), Gaps = 2/486 (0%) Query: 1 VTAFGKLIRTTAFRLTLVYLFLFALFAASLLAYFAWNTRRLITEQITTTVNVEISEITDI 60 +TAFGKLIRTTAFRLTLVYLFLFA+FAASLLAYFAWNTRRLITE+IT TVN E SEI +I Sbjct: 1 MTAFGKLIRTTAFRLTLVYLFLFAIFAASLLAYFAWNTRRLITEEITQTVNAETSEINEI 60 Query: 61 YNRRGLRGLLGTMGNRALRPGANLYLVTAPNGQMLAGNVGALAPGVMSTQGWTETAYRRL 120 Y RRGL GL+ + RALRPGANLYLVT P GQ +AGNVG+LAPGVM+T+GWTETAYRR+ Sbjct: 61 YGRRGLVGLVRAIEYRALRPGANLYLVTTPTGQAVAGNVGSLAPGVMATRGWTETAYRRI 120 Query: 121 DDQDKTDHRALVRVTQMDNGFRLLVGRDLEERRRLFGIVAKAAQWSILVVVVLGIGGGIF 180 +D D+ DHRALVRVT+++NGFRLL+GRDL ERRRLFGIVAKAAQWS+L+VVVLG+GGG+F Sbjct: 121 EDADERDHRALVRVTELENGFRLLIGRDLAERRRLFGIVAKAAQWSVLIVVVLGLGGGVF 180 Query: 181 VARRVLHRIDAMTGTTKRIMAGDLSGRLPVGRSGDELDRLAENLNAMLERIEALMTGLKE 240 VARRVL RIDAM+GT RIM GDLS RLPVGRSGDELDRLAENLNAMLERIEALM GLKE Sbjct: 181 VARRVLRRIDAMSGTAHRIMTGDLSERLPVGRSGDELDRLAENLNAMLERIEALMAGLKE 240 Query: 241 VSDNIAHDLKTPLTRLRNRAEEALARSGCEADYRAALERTIEESDGLIRTFNALLMIARA 300 VSDNIAHDLKTPLTRLRNRAEEALA+SGCEADYRAALERTIEESDGLIRTFNALLMIARA Sbjct: 241 VSDNIAHDLKTPLTRLRNRAEEALAKSGCEADYRAALERTIEESDGLIRTFNALLMIARA 300 Query: 301 ESGQARGNMDDFDGADVANGIHELYEPLAEDDGMTLQVKTVPAPIHGNRELISQAVANLV 360 ESGQARGNMDDFD ADVA GIHELYEPLAEDDGMTL+VK P P+HGNRELISQA+ANLV Sbjct: 301 ESGQARGNMDDFDAADVAGGIHELYEPLAEDDGMTLKVKADPTPVHGNRELISQALANLV 360 Query: 361 ENAIKYGKP--DASVQPLNADAREILIEAQREGDQVLLSVTDHGPGIPEADRKHAVERFV 418 ENAIKYGKP A ++ D+ +I+IEA+REGDQVLLSVTD GPGIPEADRKHAVERFV Sbjct: 361 ENAIKYGKPVTQAGGTVVSMDSGQIMIEAKREGDQVLLSVTDRGPGIPEADRKHAVERFV 420 Query: 419 RLEASRTLPGSGLGLSLASAVATLHGGELRLGDAHPGLVATLVLPARAGGSDRLAAQTQD 478 RLEASRTLPGSGLGLSLASAVATLHGGELRLGDAHPGLVATLVLPARAG DR+A D Sbjct: 421 RLEASRTLPGSGLGLSLASAVATLHGGELRLGDAHPGLVATLVLPARAGAGDRVAPPIPD 480 Query: 479 VPQKAA 484 VPQK A Sbjct: 481 VPQKVA 486 >ref|YP_531723.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] gb|ABD87404.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 486 Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/488 (80%), Positives = 430/488 (88%), Gaps = 6/488 (1%) Query: 1 VTAFGKLIRTTAFRLTLVYLFLFALFAASLLAYFAWNTRRLITEQITTTVNVEISEITDI 60 +TAF KLIRTTAFRLTLVYLFLFALFAASLLAYFAWNT RLIT+QITTTVN E+ EI+DI Sbjct: 1 MTAFSKLIRTTAFRLTLVYLFLFALFAASLLAYFAWNTHRLITDQITTTVNGEMEEISDI 60 Query: 61 YNRRGLRGLLGTMGNRALRPGANLYLVTAPNGQMLAGNVGALAPGVMSTQGWTETAYRRL 120 ++RRGLRGL+ T+ NRALRPGANLYL+T PNGQ +AGNVG LAPGVM+T GW ET YRRL Sbjct: 61 FSRRGLRGLVFTIENRALRPGANLYLITTPNGQAVAGNVGQLAPGVMATTGWAETFYRRL 120 Query: 121 DDQDKTDHRALVRVTQMDNGFRLLVGRDLEERRRLFGIVAKAAQWSILVVVVLGIGGGIF 180 DD D HRALVRV ++ GFRLL+GRDLEERRRLFG+V AAQWS+L+VVVLG+GGGIF Sbjct: 121 DDSDAPHHRALVRVAELSGGFRLLIGRDLEERRRLFGVVRSAAQWSVLIVVVLGLGGGIF 180 Query: 181 VARRVLHRIDAMTGTTKRIMAGDLSGRLPVGRSGDELDRLAENLNAMLERIEALMTGLKE 240 VARRVL RIDAMTGTT+RIMAGDLSGRLPVGRSGDELDRLAENLNAMLERIEALM GLKE Sbjct: 181 VARRVLRRIDAMTGTTQRIMAGDLSGRLPVGRSGDELDRLAENLNAMLERIEALMMGLKE 240 Query: 241 VSDNIAHDLKTPLTRLRNRAEEALARSGCEADYRAALERTIEESDGLIRTFNALLMIARA 300 VSDNIAHDLKTPLTRLRNRAEEALA+S EA+YR ALERTIEESD LIRTFNALLMIARA Sbjct: 241 VSDNIAHDLKTPLTRLRNRAEEALAKSHNEAEYRTALERTIEESDALIRTFNALLMIARA 300 Query: 301 ESGQARGNMDDFDGADVANGIHELYEPLAEDDGMTLQVKTVPAPIHGNRELISQAVANLV 360 ESGQARG+M DFD A++A GIHELYEPLAED+G++L+V+T PAP+HGNRELISQA+ANLV Sbjct: 301 ESGQARGDMADFDAAEIAKGIHELYEPLAEDNGLSLKVETTPAPLHGNRELISQALANLV 360 Query: 361 ENAIKYGKPDASVQPLNADAR----EILIEAQREGDQVLLSVTDHGPGIPEADRKHAVER 416 ENAIKYG+P A QPL ADA EILIEA+R+GDQVLL V D GPGIP +DRKHAV+R Sbjct: 361 ENAIKYGRPQAEAQPLGADAAPSSGEILIEARRDGDQVLLGVIDGGPGIPTSDRKHAVQR 420 Query: 417 FVRLEASRTLPGSGLGLSLASAVATLHGGELRLGDAHPGLVATLVLPARAGGSDRLAAQT 476 FVRLEASRT PGSGLGLSLA+AVATLHGGELRL DA PGL ATL +PARAG D LA T Sbjct: 421 FVRLEASRTQPGSGLGLSLAAAVATLHGGELRLSDADPGLRATLAIPARAG--DGLAVPT 478 Query: 477 QDVPQKAA 484 Q+ Q A Sbjct: 479 QNPEQTTA 486 >ref|YP_001239109.1| putative two-component sensor histidine kinase [Bradyrhizobium sp. BTAi1] gb|ABQ35203.1| putative two-component sensor histidine kinase [Bradyrhizobium sp. BTAi1] Length = 486 Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/488 (82%), Positives = 440/488 (90%), Gaps = 6/488 (1%) Query: 1 VTAFGKLIRTTAFRLTLVYLFLFALFAASLLAYFAWNTRRLITEQITTTVNVEISEITDI 60 +TAFGKLIRTTAFRLTLVYL LFALFAASLL YFAWNTRRLITEQI+TTV EISE+TDI Sbjct: 1 MTAFGKLIRTTAFRLTLVYLLLFALFAASLLGYFAWNTRRLITEQISTTVTAEISEMTDI 60 Query: 61 YNRRGLRGLLGTMGNRALRPGANLYLVTAPNGQMLAGNVGALAPGVMSTQGWTETAYRRL 120 ++ RGLRGL+ + NRALRPGANLYL+T P GQ +AGNVG+LAPGVM + GW+ET YRRL Sbjct: 61 FSHRGLRGLVYNIENRALRPGANLYLITTPTGQAIAGNVGSLAPGVMGSSGWSETFYRRL 120 Query: 121 DDQDKTDHRALVRVTQMDNGFRLLVGRDLEERRRLFGIVAKAAQWSILVVVVLGIGGGIF 180 DD + +HRALV VTQ+ +GFRLL+GRDLEERRRLFGIVAKAAQWS+LVVVVLGIGGGIF Sbjct: 121 DDSSEQNHRALVYVTQLSSGFRLLIGRDLEERRRLFGIVAKAAQWSVLVVVVLGIGGGIF 180 Query: 181 VARRVLHRIDAMTGTTKRIMAGDLSGRLPVGRSGDELDRLAENLNAMLERIEALMTGLKE 240 VARRVL RIDAMTGTT+RIM GDL+GRLPVGRSGDELDRLAENLNAMLERIEALMTGLKE Sbjct: 181 VARRVLQRIDAMTGTTRRIMDGDLTGRLPVGRSGDELDRLAENLNAMLERIEALMTGLKE 240 Query: 241 VSDNIAHDLKTPLTRLRNRAEEALARSGCEADYRAALERTIEESDGLIRTFNALLMIARA 300 VSDNIAHDLKTPLTRLRNRAEEALA+S E +YRAALERTIEESDGLIRTFNALLMIARA Sbjct: 241 VSDNIAHDLKTPLTRLRNRAEEALAKSRSEDEYRAALERTIEESDGLIRTFNALLMIARA 300 Query: 301 ESGQARGNMDDFDGADVANGIHELYEPLAEDDGMTLQVKTVPAPIHGNRELISQAVANLV 360 ESGQARG+M +FD A+VA GIHELYEPLAED+ MTL+VK AP+HGNRELISQA+ANLV Sbjct: 301 ESGQARGDMVEFDAAEVAGGIHELYEPLAEDNDMTLRVKAAAAPVHGNRELISQALANLV 360 Query: 361 ENAIKYGKPDASVQPLNADA----REILIEAQREGDQVLLSVTDHGPGIPEADRKHAVER 416 ENAIKYGKP A PL+ +A REILIEA+REG QVLLSVTDHG GIPEA+RKHAVER Sbjct: 361 ENAIKYGKPAA--LPLDPNAAAATREILIEARREGGQVLLSVTDHGEGIPEAERKHAVER 418 Query: 417 FVRLEASRTLPGSGLGLSLASAVATLHGGELRLGDAHPGLVATLVLPARAGGSDRLAAQT 476 FVRLEASRTLPGSGLGLSLASAVATLHGGELRLGDA PGL+ATLVLPA AG +LAA T Sbjct: 419 FVRLEASRTLPGSGLGLSLASAVATLHGGELRLGDARPGLIATLVLPAGAGVPAKLAAPT 478 Query: 477 QDVPQKAA 484 QDVPQKAA Sbjct: 479 QDVPQKAA 486 >ref|YP_569149.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB5] gb|ABE39248.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] Length = 490 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/475 (81%), Positives = 419/475 (88%), Gaps = 8/475 (1%) Query: 1 VTAFGKLIRTTAFRLTLVYLFLFALFAASLLAYFAWNTRRLITEQITTTVNVEISEITDI 60 +TAFGKLIRTTAFRLTLVYLFLF LFAASLL YFAWNTRRLIT+QITTTVN EI EI +I Sbjct: 1 MTAFGKLIRTTAFRLTLVYLFLFGLFAASLLGYFAWNTRRLITDQITTTVNAEIGEIDEI 60 Query: 61 YNRRGLRGLLGTMGNRALRPGANLYLVTAPNGQMLAGNVGALAPGVMSTQGWTETAYRRL 120 Y RRGLRGL+ T+ +RALRPGANLYLVT P GQ +AGNVG+LAPGVMS GWTET YRRL Sbjct: 61 YTRRGLRGLVYTIESRALRPGANLYLVTTPAGQAVAGNVGSLAPGVMSKIGWTETFYRRL 120 Query: 121 DDQDKTDHRALVRVTQMDNGFRLLVGRDLEERRRLFGIVAKAAQWSILVVVVLGIGGGIF 180 DDQD+ HRALVRV+++ +GFRLLVGRDLEERRRLF +V AAQWS+L+VVVLG+GGGIF Sbjct: 121 DDQDRAQHRALVRVSELSSGFRLLVGRDLEERRRLFNVVRSAAQWSVLIVVVLGLGGGIF 180 Query: 181 VARRVLHRIDAMTGTTKRIMAGDLSGRLPVGRSGDELDRLAENLNAMLERIEALMTGLKE 240 VARRVL RIDAMTGTT+RIMAGDLSGRLPVGRSGDELDRLAENLNAMLERIEALM GLKE Sbjct: 181 VARRVLRRIDAMTGTTQRIMAGDLSGRLPVGRSGDELDRLAENLNAMLERIEALMNGLKE 240 Query: 241 VSDNIAHDLKTPLTRLRNRAEEALARSGCEADYRAALERTIEESDGLIRTFNALLMIARA 300 VSDNIAHDLKTPLTRLRNRAEEALA+SG EADYRAALERTIEESDGLIRTFNALLMIARA Sbjct: 241 VSDNIAHDLKTPLTRLRNRAEEALAQSGGEADYRAALERTIEESDGLIRTFNALLMIARA 300 Query: 301 ESGQARGNMDDFDGADVANGIHELYEPLAEDDGMTLQVKTVPAPIHGNRELISQAVANLV 360 ESG +RG+MD FD AD A IHELYEPLAED+G+TLQV++ PAP+ GNR+LISQA+ANLV Sbjct: 301 ESGHSRGDMDTFDAADTARDIHELYEPLAEDNGLTLQVRSEPAPVRGNRDLISQALANLV 360 Query: 361 ENAIKYGKPDASVQPLNA--------DAREILIEAQREGDQVLLSVTDHGPGIPEADRKH 412 ENAIKYG+P ++ A DA ILIEA+R+GDQVLLSVTDHG GIPE DRKH Sbjct: 361 ENAIKYGQPQLALAAPGAEPNAAAPPDATVILIEARRDGDQVLLSVTDHGRGIPETDRKH 420 Query: 413 AVERFVRLEASRTLPGSGLGLSLASAVATLHGGELRLGDAHPGLVATLVLPARAG 467 AVERFVRLEASRT PGSGLGLSLASAVATLHGGELRL DA PGL ATL +PA G Sbjct: 421 AVERFVRLEASRTQPGSGLGLSLASAVATLHGGELRLSDAQPGLRATLAIPAHTG 475