BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0248.0021.p (226 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001204791.1| putative two-component transcriptional regul... 432 e-119 ref|NP_769771.1| two-component response regulator [Bradyrhizobiu... 425 e-117 ref|NP_947275.1| two-component transcriptional regulator [Rhodop... 425 e-117 ref|YP_004109873.1| winged helix family two component transcript... 423 e-117 ref|YP_487049.1| two component transcriptional regulator [Rhodop... 422 e-116 >ref|YP_001204791.1| putative two-component transcriptional regulator [Bradyrhizobium sp. ORS 278] ref|YP_001239102.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1] emb|CAL76554.1| putative Two-component transcriptional regulator; putative transcriptional regulator involved in heavy-metal (Cu/Zn) homeostasis [Bradyrhizobium sp. ORS 278] gb|ABQ35196.1| two component transcriptional regulator, winged helix family [Bradyrhizobium sp. BTAi1] Length = 234 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 213/226 (94%), Positives = 224/226 (99%) Query: 1 MRILIIEDDRESADYLVKAFREVGYIADLASDGEEGLSMAETGDYDVLVVDRMLPKRDGL 60 MR+LIIEDDRESADYLVKAFREVG++ADLA DGEEGL+MAE+GDYDVLVVDRMLPKRDGL Sbjct: 9 MRLLIIEDDRESADYLVKAFREVGHVADLAGDGEEGLAMAESGDYDVLVVDRMLPKRDGL 68 Query: 61 SLIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRNV 120 SLIG+LRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPY+FAELLARVEVLSRR+ Sbjct: 69 SLIGALRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 128 Query: 121 GPAEETTYRVGDLELDRLSHRVARGKDELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180 GPAEETTY+VGDLELDRLSHRVARGKDELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW Sbjct: 129 GPAEETTYKVGDLELDRLSHRVARGKDELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 188 Query: 181 DYHFDPQTNVIDVHISRLRSKIDKGFERPLLHTIRGAGYMIRDGIR 226 DYHFDPQTNVIDVHISRLRSKIDKGF+RPLLHTIRGAGYMIRDG+R Sbjct: 189 DYHFDPQTNVIDVHISRLRSKIDKGFDRPLLHTIRGAGYMIRDGLR 234 >ref|NP_769771.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC48396.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 247 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 213/226 (94%), Positives = 218/226 (96%) Query: 1 MRILIIEDDRESADYLVKAFREVGYIADLASDGEEGLSMAETGDYDVLVVDRMLPKRDGL 60 MR+LIIEDDRESADYLVKAFREVG+IAD A DGEEGL+MAE GDYDVLVVDRMLPKRDGL Sbjct: 22 MRLLIIEDDRESADYLVKAFREVGHIADHAPDGEEGLAMAENGDYDVLVVDRMLPKRDGL 81 Query: 61 SLIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRNV 120 SLIG+LRDKGN PVLILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRR Sbjct: 82 SLIGALRDKGNTAPVLILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRRG 141 Query: 121 GPAEETTYRVGDLELDRLSHRVARGKDELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180 GPAE+T YRVGDLELDRLSHRVARGKDELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW Sbjct: 142 GPAEDTLYRVGDLELDRLSHRVARGKDELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 201 Query: 181 DYHFDPQTNVIDVHISRLRSKIDKGFERPLLHTIRGAGYMIRDGIR 226 DYHFDPQTNVIDVHISRLRSKIDKGFERPLLHTIRGAGYMIRDGIR Sbjct: 202 DYHFDPQTNVIDVHISRLRSKIDKGFERPLLHTIRGAGYMIRDGIR 247 >ref|NP_947275.1| two-component transcriptional regulator [Rhodopseudomonas palustris CGA009] ref|YP_001991137.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris TIE-1] emb|CAE27371.1| two-component transcriptional regulator, winged helix family [Rhodopseudomonas palustris CGA009] gb|ACF00662.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] Length = 241 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 210/226 (92%), Positives = 221/226 (97%) Query: 1 MRILIIEDDRESADYLVKAFREVGYIADLASDGEEGLSMAETGDYDVLVVDRMLPKRDGL 60 MR+LIIEDDRESADYLVKAFREVG+IADLASDGEEGL+MAE+GDYDVLVVDRMLPKRDGL Sbjct: 16 MRLLIIEDDRESADYLVKAFREVGHIADLASDGEEGLAMAESGDYDVLVVDRMLPKRDGL 75 Query: 61 SLIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRNV 120 S+IGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPY+FAELLARVEVLSRR+ Sbjct: 76 SVIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 135 Query: 121 GPAEETTYRVGDLELDRLSHRVARGKDELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180 GPAEET+YRV DLELDRLSHRV RG +ELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW Sbjct: 136 GPAEETSYRVADLELDRLSHRVTRGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 195 Query: 181 DYHFDPQTNVIDVHISRLRSKIDKGFERPLLHTIRGAGYMIRDGIR 226 DYHFDPQTNVIDVHISRLRSKIDKGF+ PLLHTIRGAGYMIRDG+R Sbjct: 196 DYHFDPQTNVIDVHISRLRSKIDKGFDHPLLHTIRGAGYMIRDGLR 241 >ref|YP_004109873.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gb|ADU45140.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 241 Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust. Identities = 209/226 (92%), Positives = 221/226 (97%) Query: 1 MRILIIEDDRESADYLVKAFREVGYIADLASDGEEGLSMAETGDYDVLVVDRMLPKRDGL 60 MR+LIIEDDRESADYLVKAFREVG+IADLA DGEEGL++AE+GDYDVLVVDRMLPKRDGL Sbjct: 16 MRLLIIEDDRESADYLVKAFREVGHIADLAGDGEEGLALAESGDYDVLVVDRMLPKRDGL 75 Query: 61 SLIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRNV 120 S+IGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPY+FAELLARVEVLSRR+ Sbjct: 76 SVIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 135 Query: 121 GPAEETTYRVGDLELDRLSHRVARGKDELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180 GPAEET+YRVGDLELDRLSHRV RG +ELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW Sbjct: 136 GPAEETSYRVGDLELDRLSHRVTRGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 195 Query: 181 DYHFDPQTNVIDVHISRLRSKIDKGFERPLLHTIRGAGYMIRDGIR 226 DYHFDPQTNVIDVHISRLR KIDKGF+RPLLHTIRGAGYMIRDG+R Sbjct: 196 DYHFDPQTNVIDVHISRLRGKIDKGFDRPLLHTIRGAGYMIRDGLR 241 >ref|YP_487049.1| two component transcriptional regulator [Rhodopseudomonas palustris HaA2] gb|ABD08138.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris HaA2] Length = 241 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 206/226 (91%), Positives = 221/226 (97%) Query: 1 MRILIIEDDRESADYLVKAFREVGYIADLASDGEEGLSMAETGDYDVLVVDRMLPKRDGL 60 MR+LIIEDDRESADYLVKAFREVG++ADLASDGEEGL++A++GDYDVLV+DRMLPKRDGL Sbjct: 16 MRLLIIEDDRESADYLVKAFREVGHVADLASDGEEGLALADSGDYDVLVIDRMLPKRDGL 75 Query: 61 SLIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRNV 120 S+IG+LRDKGNRTP LILSALGQVDDRIKGLRAGGDDYLPKPY+FAELLARVEVLSRR+ Sbjct: 76 SVIGTLRDKGNRTPALILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 135 Query: 121 GPAEETTYRVGDLELDRLSHRVARGKDELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180 GPAEET+YRVGDLELDRLSHRV RG +ELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW Sbjct: 136 GPAEETSYRVGDLELDRLSHRVTRGSEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 195 Query: 181 DYHFDPQTNVIDVHISRLRSKIDKGFERPLLHTIRGAGYMIRDGIR 226 DYHFDPQTNVIDVHISRLR KIDKGF+RPLLHTIRGAGYMIRDGIR Sbjct: 196 DYHFDPQTNVIDVHISRLRGKIDKGFDRPLLHTIRGAGYMIRDGIR 241