BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0248.0018.p         (137 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAA80244.1| CycK [Bradyrhizobium japonicum] >gi|572603|emb|C...   230   5e-59
ref|NP_769767.1| cytochrome C-type biogenesis protein [Bradyrhiz...   230   6e-59
ref|YP_576721.1| cytochrome c-type biogenesis protein CcmF [Nitr...   218   3e-55
ref|YP_780858.1| cytochrome c-type biogenesis protein CcmF [Rhod...   216   7e-55
ref|ZP_01046351.1| Cytochrome c-type biogenesis protein CcmF [Ni...   212   1e-53

>emb|CAA80244.1| CycK [Bradyrhizobium japonicum]
 emb|CAA86575.1| cycK [Bradyrhizobium japonicum]
          Length = 660

 Score =  230 bits (587), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 109/137 (79%), Positives = 125/137 (91%)

Query: 1   MKPDDVARVAGYQLRLDGLNPRQGPNFREMVAQFTVTRDGEKVSVMTPSKRNFTTRGAST 60
           MK  DVA VAGY ++LDGL  RQGPN+REM+A+F V+RDGE +SVMTPSKR+FTTRG+ST
Sbjct: 524 MKRSDVAHVAGYDVKLDGLFQRQGPNYREMIAEFNVSRDGETLSVMTPSKRSFTTRGSST 583

Query: 61  TEAALMTRGASQLYISLGDTSADGAIAVRIYHKPLVLMIWWGPVLMAFGGMLSLSDRRLR 120
           TEAAL+TRGASQLYISLGD +A+GAIAVRIYHKPLVL+IWWGPVLMAFGG+LSLSDRRLR
Sbjct: 584 TEAALLTRGASQLYISLGDANAEGAIAVRIYHKPLVLLIWWGPVLMAFGGVLSLSDRRLR 643

Query: 121 VGAPKPAKAARALQAAE 137
           VGAPKPA+A + LQ AE
Sbjct: 644 VGAPKPARAKQRLQPAE 660


>ref|NP_769767.1| cytochrome C-type biogenesis protein [Bradyrhizobium japonicum USDA
           110]
 sp|P45403.2|CCMF_BRAJA RecName: Full=Cytochrome c-type biogenesis protein CycK
 dbj|BAC48392.1| cytochrome C-type biogenesis protein [Bradyrhizobium japonicum USDA
           110]
          Length = 660

 Score =  230 bits (586), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 109/137 (79%), Positives = 125/137 (91%)

Query: 1   MKPDDVARVAGYQLRLDGLNPRQGPNFREMVAQFTVTRDGEKVSVMTPSKRNFTTRGAST 60
           MK  DVA VAGY ++LDGL  RQGPN+REM+A+F V+RDGE +SVMTPSKR+FTTRG+ST
Sbjct: 524 MKRSDVAHVAGYDVKLDGLFQRQGPNYREMIAEFNVSRDGETLSVMTPSKRSFTTRGSST 583

Query: 61  TEAALMTRGASQLYISLGDTSADGAIAVRIYHKPLVLMIWWGPVLMAFGGMLSLSDRRLR 120
           TEAAL+TRGASQLYISLGD +A+GAIAVRIYHKPLVL+IWWGPVLMAFGG+LSLSDRRLR
Sbjct: 584 TEAALLTRGASQLYISLGDANAEGAIAVRIYHKPLVLLIWWGPVLMAFGGVLSLSDRRLR 643

Query: 121 VGAPKPAKAARALQAAE 137
           VGAPKPA+A + LQ AE
Sbjct: 644 VGAPKPARAKQRLQPAE 660


>ref|YP_576721.1| cytochrome c-type biogenesis protein CcmF [Nitrobacter hamburgensis
           X14]
 gb|ABE62261.1| cytochrome c-type biogenesis protein CcmF [Nitrobacter hamburgensis
           X14]
          Length = 660

 Score =  218 bits (554), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/137 (75%), Positives = 121/137 (88%)

Query: 1   MKPDDVARVAGYQLRLDGLNPRQGPNFREMVAQFTVTRDGEKVSVMTPSKRNFTTRGAST 60
           MK +DVA+V GY L  DG   R+  NFRE +A+FTV++DG+ ++VMTPSKRNFTTR AST
Sbjct: 524 MKQNDVAQVGGYSLTFDGTTQRERSNFREQIARFTVSKDGQPIAVMTPSKRNFTTRAAST 583

Query: 61  TEAALMTRGASQLYISLGDTSADGAIAVRIYHKPLVLMIWWGPVLMAFGGMLSLSDRRLR 120
           TEAAL+TRGASQLYISLGDT+ADGA+AVRIYHKP+VL+IW+GPVLMAFGG+LSLSDRRLR
Sbjct: 584 TEAALLTRGASQLYISLGDTAADGAVAVRIYHKPMVLLIWFGPVLMAFGGVLSLSDRRLR 643

Query: 121 VGAPKPAKAARALQAAE 137
           VGAPKPAKA+  LQ AE
Sbjct: 644 VGAPKPAKASHILQPAE 660


>ref|YP_780858.1| cytochrome c-type biogenesis protein CcmF [Rhodopseudomonas
           palustris BisA53]
 gb|ABJ05878.1| cytochrome c-type biogenesis protein CcmF [Rhodopseudomonas
           palustris BisA53]
          Length = 660

 Score =  216 bits (551), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 101/137 (73%), Positives = 120/137 (87%)

Query: 1   MKPDDVARVAGYQLRLDGLNPRQGPNFREMVAQFTVTRDGEKVSVMTPSKRNFTTRGAST 60
           MKP+D   VAGYQ++LD L+ RQGPNFREM A F+V++DG+ +S M PSKR+F TRG ST
Sbjct: 524 MKPNDTTMVAGYQVKLDTLSQRQGPNFREMFASFSVSQDGQLLSTMVPSKRSFQTRGMST 583

Query: 61  TEAALMTRGASQLYISLGDTSADGAIAVRIYHKPLVLMIWWGPVLMAFGGMLSLSDRRLR 120
           +EAAL+TRG SQLYISLG+ +ADG IAVR+YHKP VL+IW+GP+LMAFGG+LSLSDRRLR
Sbjct: 584 SEAALLTRGVSQLYISLGEPTADGGIAVRVYHKPWVLLIWYGPLLMAFGGLLSLSDRRLR 643

Query: 121 VGAPKPAKAARALQAAE 137
           VGAPKPAK ARALQAAE
Sbjct: 644 VGAPKPAKQARALQAAE 660


>ref|ZP_01046351.1| Cytochrome c-type biogenesis protein CcmF [Nitrobacter sp. Nb-311A]
 gb|EAQ35665.1| Cytochrome c-type biogenesis protein CcmF [Nitrobacter sp. Nb-311A]
          Length = 660

 Score =  212 bits (540), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 101/137 (73%), Positives = 119/137 (86%)

Query: 1   MKPDDVARVAGYQLRLDGLNPRQGPNFREMVAQFTVTRDGEKVSVMTPSKRNFTTRGAST 60
           MK +DVA+V GY L  +G   +Q  N+RE +A+FTV+R+G+ ++VMTPSKRNFTTR AST
Sbjct: 524 MKTNDVAQVGGYSLTFEGTTQQQRSNYREDIARFTVSRNGQPIAVMTPSKRNFTTRAAST 583

Query: 61  TEAALMTRGASQLYISLGDTSADGAIAVRIYHKPLVLMIWWGPVLMAFGGMLSLSDRRLR 120
           TEAAL+TRG SQLYISLGD SADG+IAVRIYHKP+VL+IW+GPVLMAFGG+LSLSDRRLR
Sbjct: 584 TEAALLTRGVSQLYISLGDASADGSIAVRIYHKPMVLLIWFGPVLMAFGGVLSLSDRRLR 643

Query: 121 VGAPKPAKAARALQAAE 137
           VGAPKPAKA R LQ AE
Sbjct: 644 VGAPKPAKAGRVLQPAE 660