BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0248.0017.p (475 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_531714.1| cytochrome c-type biogenesis protein CcmF [Rhod... 788 0.0 ref|YP_569139.1| cytochrome c-type biogenesis protein CcmF [Rhod... 788 0.0 ref|YP_576721.1| cytochrome c-type biogenesis protein CcmF [Nitr... 788 0.0 ref|ZP_01046351.1| Cytochrome c-type biogenesis protein CcmF [Ni... 786 0.0 ref|YP_001991129.1| cytochrome C-type biogenesis protein CcmF [R... 785 0.0 >ref|YP_531714.1| cytochrome c-type biogenesis protein CcmF [Rhodopseudomonas palustris BisB18] gb|ABD87395.1| cytochrome c-type biogenesis protein CcmF [Rhodopseudomonas palustris BisB18] Length = 660 Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/458 (88%), Positives = 437/458 (95%) Query: 1 VIAESGHYALVLALGLALIQSIVPIVGARWRDAALMNVARSTALAQLLFVAASFAALVTL 60 +IAE+GHYALVLALGLALIQ+ VP++GAR RD ALMNVARS ALAQLLFV SF ALV L Sbjct: 1 MIAEAGHYALVLALGLALIQASVPVLGARLRDPALMNVARSAALAQLLFVGLSFTALVYL 60 Query: 61 HVTSDFSVANVYENSHSLKPLLYKITGVWGNHEGSMLLWVSILALFGGLVAAFGNNLPLS 120 +V SDFSVANV+ENSHS KPLLYKITGVWGNHEGSMLLWVSILALFGGLVAAFGNNLPLS Sbjct: 61 YVISDFSVANVFENSHSAKPLLYKITGVWGNHEGSMLLWVSILALFGGLVAAFGNNLPLS 120 Query: 121 LRAHVLAVQAWVASAFYLFILITSNPFLRIANPPLEGRDLNPVLQDIGLAVHPPMLYLGY 180 LRAHVLAVQAW+A+AFYLFILITSNPFLR+ +PP+EGRDLNPVLQDIGLA+HPPMLYLGY Sbjct: 121 LRAHVLAVQAWIATAFYLFILITSNPFLRLDDPPIEGRDLNPVLQDIGLAIHPPMLYLGY 180 Query: 181 VGFSISFSFAVAALLEGRIDAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGGWWF 240 VGFSISFSFA+AAL+EGR+DAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGGWWF Sbjct: 181 VGFSISFSFAIAALIEGRVDAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGGWWF 240 Query: 241 WDPVENASLMPWLAGTALLHSALVMEKRNALKVWTVLLSILTFSLSLLGTFLVRSGVLTS 300 WDPVENASLMPWLAGTALLHSA+VMEKRNALKVWT+LLSILTFSLSLLGTFLVRSGVLTS Sbjct: 241 WDPVENASLMPWLAGTALLHSAVVMEKRNALKVWTILLSILTFSLSLLGTFLVRSGVLTS 300 Query: 301 VHAFATDPTRGVFILLILFVFIGGSLSLYAWRAPALKQGGLFAPISREGALVLNNLLLTT 360 VHAFATDPTRGVFILLIL VFIGGSLSLYA RA +LKQGGLFAPISREGALVLNNL LTT Sbjct: 301 VHAFATDPTRGVFILLILCVFIGGSLSLYASRASSLKQGGLFAPISREGALVLNNLFLTT 360 Query: 361 ACATVFIGTLYPLALEVLTGEKISVGAPFFNFTFAPLFVPLLLAVPFGPLLAWKRGDLLG 420 ACATVFIGTLYPLALEVLTG+KISVGAPFFN TF PLFVPLLLAVPFGPLLAWKRGDL+G Sbjct: 361 ACATVFIGTLYPLALEVLTGDKISVGAPFFNLTFGPLFVPLLLAVPFGPLLAWKRGDLIG 420 Query: 421 AAQRLMLAGIVALVAMALVLAWTYGGATLAPLAIGLAV 458 AAQRL+ AG+ AL+A+AL+ ++ +GG+TLAPLAIGLAV Sbjct: 421 AAQRLIAAGVAALIAIALLWSFVHGGSTLAPLAIGLAV 458 >ref|YP_569139.1| cytochrome c-type biogenesis protein CcmF [Rhodopseudomonas palustris BisB5] gb|ABE39238.1| cytochrome c-type biogenesis protein CcmF [Rhodopseudomonas palustris BisB5] Length = 660 Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/458 (88%), Positives = 432/458 (94%) Query: 1 VIAESGHYALVLALGLALIQSIVPIVGARWRDAALMNVARSTALAQLLFVAASFAALVTL 60 +IAE+GHYALVLAL LALIQS VPI+GAR D LMNVARSTALAQ FVAASF ALV L Sbjct: 1 MIAEAGHYALVLALALALIQSTVPILGARLNDGGLMNVARSTALAQFAFVAASFGALVYL 60 Query: 61 HVTSDFSVANVYENSHSLKPLLYKITGVWGNHEGSMLLWVSILALFGGLVAAFGNNLPLS 120 +VTSDFSV NVYENSHS KPLLYKITGVWGNHEGSMLLWV+ILALFGGLVAAFGNNLPLS Sbjct: 61 NVTSDFSVLNVYENSHSAKPLLYKITGVWGNHEGSMLLWVAILALFGGLVAAFGNNLPLS 120 Query: 121 LRAHVLAVQAWVASAFYLFILITSNPFLRIANPPLEGRDLNPVLQDIGLAVHPPMLYLGY 180 LRAHVLAVQAWVASAFYLFILITSNPFLRI NPP+EGRDLNPVLQDIGLAVHPP+LYLGY Sbjct: 121 LRAHVLAVQAWVASAFYLFILITSNPFLRIPNPPIEGRDLNPVLQDIGLAVHPPLLYLGY 180 Query: 181 VGFSISFSFAVAALLEGRIDAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGGWWF 240 VGFSISFSFA AALLEGR+DAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGGWWF Sbjct: 181 VGFSISFSFAAAALLEGRLDAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGGWWF 240 Query: 241 WDPVENASLMPWLAGTALLHSALVMEKRNALKVWTVLLSILTFSLSLLGTFLVRSGVLTS 300 WDPVENASLMPWLAGTALLHSALVMEKRNALKVWT+LL+ILTFSLSLLGTFLVRSGVLTS Sbjct: 241 WDPVENASLMPWLAGTALLHSALVMEKRNALKVWTILLAILTFSLSLLGTFLVRSGVLTS 300 Query: 301 VHAFATDPTRGVFILLILFVFIGGSLSLYAWRAPALKQGGLFAPISREGALVLNNLLLTT 360 VH FATDP+RGVFIL+IL VFIGGSL+L+AWRA ALKQGGLFAPISREGALVLNNL LTT Sbjct: 301 VHTFATDPSRGVFILVILCVFIGGSLALFAWRASALKQGGLFAPISREGALVLNNLFLTT 360 Query: 361 ACATVFIGTLYPLALEVLTGEKISVGAPFFNFTFAPLFVPLLLAVPFGPLLAWKRGDLLG 420 ACATVF+GTLYPLALEV+TG+KISVGAPFFN TF PLFVPL+LA+PFGPLLAWKRGD++G Sbjct: 361 ACATVFVGTLYPLALEVVTGDKISVGAPFFNLTFGPLFVPLMLAMPFGPLLAWKRGDIVG 420 Query: 421 AAQRLMLAGIVALVAMALVLAWTYGGATLAPLAIGLAV 458 AAQRL+ AG+VAL+ +ALV AWT GG LAPLAIGLAV Sbjct: 421 AAQRLIAAGVVALLTVALVWAWTTGGPVLAPLAIGLAV 458 >ref|YP_576721.1| cytochrome c-type biogenesis protein CcmF [Nitrobacter hamburgensis X14] gb|ABE62261.1| cytochrome c-type biogenesis protein CcmF [Nitrobacter hamburgensis X14] Length = 660 Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/458 (88%), Positives = 432/458 (94%) Query: 1 VIAESGHYALVLALGLALIQSIVPIVGARWRDAALMNVARSTALAQLLFVAASFAALVTL 60 +IAE GHYALVLALGLALIQS VPI+GAR D ALMNVARSTALAQLLFV SF ALVTL Sbjct: 1 MIAEVGHYALVLALGLALIQSTVPIIGARLHDGALMNVARSTALAQLLFVGVSFLALVTL 60 Query: 61 HVTSDFSVANVYENSHSLKPLLYKITGVWGNHEGSMLLWVSILALFGGLVAAFGNNLPLS 120 HV SDFSV NV+ENSHSLKP+LYKITGVWGNHEGSMLLWV+ILALFGGLVAAFG+NLPLS Sbjct: 61 HVISDFSVVNVFENSHSLKPMLYKITGVWGNHEGSMLLWVTILALFGGLVAAFGSNLPLS 120 Query: 121 LRAHVLAVQAWVASAFYLFILITSNPFLRIANPPLEGRDLNPVLQDIGLAVHPPMLYLGY 180 LRAHVLAVQ W+A+AFYLFIL+TSNPF+R+ +PPLEGRDLNPVLQDIGLAVHPPMLYLGY Sbjct: 121 LRAHVLAVQGWIATAFYLFILLTSNPFMRLVSPPLEGRDLNPVLQDIGLAVHPPMLYLGY 180 Query: 181 VGFSISFSFAVAALLEGRIDAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGGWWF 240 VGFSISFSFAVAAL+EGRIDAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGGWWF Sbjct: 181 VGFSISFSFAVAALIEGRIDAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGGWWF 240 Query: 241 WDPVENASLMPWLAGTALLHSALVMEKRNALKVWTVLLSILTFSLSLLGTFLVRSGVLTS 300 WDPVENASLMPWLAGTALLHS++VMEKRNAL+VWT+LL+ILTFSLSLLGTFLVRSGVLTS Sbjct: 241 WDPVENASLMPWLAGTALLHSSVVMEKRNALRVWTILLAILTFSLSLLGTFLVRSGVLTS 300 Query: 301 VHAFATDPTRGVFILLILFVFIGGSLSLYAWRAPALKQGGLFAPISREGALVLNNLLLTT 360 VHAFATDPTRGVFILLIL FIGGSLSLY WRA ALKQGGLFAPISREGALVLNNL LTT Sbjct: 301 VHAFATDPTRGVFILLILCTFIGGSLSLYIWRASALKQGGLFAPISREGALVLNNLFLTT 360 Query: 361 ACATVFIGTLYPLALEVLTGEKISVGAPFFNFTFAPLFVPLLLAVPFGPLLAWKRGDLLG 420 ACATVFIGTLYPLALEV+TG +ISVGAPFFN TFAPLFVPLL+AVPFGPLLAWKRGDL G Sbjct: 361 ACATVFIGTLYPLALEVITGTRISVGAPFFNLTFAPLFVPLLIAVPFGPLLAWKRGDLAG 420 Query: 421 AAQRLMLAGIVALVAMALVLAWTYGGATLAPLAIGLAV 458 A+QRLM AGI ++A+A++ AWT GG+T APLAIGLAV Sbjct: 421 ASQRLMAAGIGGIIAVAVLWAWTRGGSTFAPLAIGLAV 458 >ref|ZP_01046351.1| Cytochrome c-type biogenesis protein CcmF [Nitrobacter sp. Nb-311A] gb|EAQ35665.1| Cytochrome c-type biogenesis protein CcmF [Nitrobacter sp. Nb-311A] Length = 660 Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/458 (87%), Positives = 436/458 (95%) Query: 1 VIAESGHYALVLALGLALIQSIVPIVGARWRDAALMNVARSTALAQLLFVAASFAALVTL 60 +IAE+GH+ALVLALGLALIQS+VPI+GAR D ALMNVARSTALAQLLFV ASF AL TL Sbjct: 1 MIAEAGHFALVLALGLALIQSVVPIIGARLHDGALMNVARSTALAQLLFVGASFFALATL 60 Query: 61 HVTSDFSVANVYENSHSLKPLLYKITGVWGNHEGSMLLWVSILALFGGLVAAFGNNLPLS 120 +V SDFSV NV++NSHSLKPL+YKITGVWGNHEGSMLLWV+ILALFGGLVAAFGNNLPL+ Sbjct: 61 YVVSDFSVVNVFQNSHSLKPLIYKITGVWGNHEGSMLLWVTILALFGGLVAAFGNNLPLT 120 Query: 121 LRAHVLAVQAWVASAFYLFILITSNPFLRIANPPLEGRDLNPVLQDIGLAVHPPMLYLGY 180 LRAHVLAVQ W+A+AFYLFIL+TSNPF+RIANPP+EGRDLNPVLQDIGLAVHPPMLYLGY Sbjct: 121 LRAHVLAVQGWIATAFYLFILLTSNPFMRIANPPMEGRDLNPVLQDIGLAVHPPMLYLGY 180 Query: 181 VGFSISFSFAVAALLEGRIDAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGGWWF 240 VGFSI+FSFAVAAL+EGRIDAAWARWVRPWTL+AWIFLTLGIAMGSYWAYYELGWGGWWF Sbjct: 181 VGFSIAFSFAVAALIEGRIDAAWARWVRPWTLVAWIFLTLGIAMGSYWAYYELGWGGWWF 240 Query: 241 WDPVENASLMPWLAGTALLHSALVMEKRNALKVWTVLLSILTFSLSLLGTFLVRSGVLTS 300 WDPVENASLMPWLAGTALLHS++VMEKRNAL+VWT+LL+ILTFSLSLLGTFLVRSGVLTS Sbjct: 241 WDPVENASLMPWLAGTALLHSSVVMEKRNALRVWTILLAILTFSLSLLGTFLVRSGVLTS 300 Query: 301 VHAFATDPTRGVFILLILFVFIGGSLSLYAWRAPALKQGGLFAPISREGALVLNNLLLTT 360 VHAFATDPTRGVFILLIL FIGGSL+LY WRA ALKQGGLFAPISREGALVLNNL LTT Sbjct: 301 VHAFATDPTRGVFILLILCTFIGGSLTLYVWRASALKQGGLFAPISREGALVLNNLFLTT 360 Query: 361 ACATVFIGTLYPLALEVLTGEKISVGAPFFNFTFAPLFVPLLLAVPFGPLLAWKRGDLLG 420 ACATVFIGTLYPLALEV+TG +ISVGAPFFN TFAPLFVPLL+AVPFGPLLAWKRGDLLG Sbjct: 361 ACATVFIGTLYPLALEVITGNRISVGAPFFNLTFAPLFVPLLIAVPFGPLLAWKRGDLLG 420 Query: 421 AAQRLMLAGIVALVAMALVLAWTYGGATLAPLAIGLAV 458 A+QRL+ AG+ + +A+A++ AWT GG+T APLAIGLAV Sbjct: 421 ASQRLVAAGVASAIAVAVLWAWTRGGSTFAPLAIGLAV 458 >ref|YP_001991129.1| cytochrome C-type biogenesis protein CcmF [Rhodopseudomonas palustris TIE-1] gb|ACF00654.1| cytochrome c-type biogenesis protein CcmF [Rhodopseudomonas palustris TIE-1] Length = 660 Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/458 (88%), Positives = 430/458 (93%) Query: 1 VIAESGHYALVLALGLALIQSIVPIVGARWRDAALMNVARSTALAQLLFVAASFAALVTL 60 +IAE+GHYALVLAL LALIQS VP++GAR D ALMNVARSTAL QLLF SF ALV L Sbjct: 1 MIAEAGHYALVLALALALIQSTVPLLGARLNDGALMNVARSTALVQLLFAGLSFTALVWL 60 Query: 61 HVTSDFSVANVYENSHSLKPLLYKITGVWGNHEGSMLLWVSILALFGGLVAAFGNNLPLS 120 HVTSDFSV NVYENSHS+KPLLYKITGVWGNHEGSMLLWV+ILALFGGLVAAFGNNLPLS Sbjct: 61 HVTSDFSVVNVYENSHSMKPLLYKITGVWGNHEGSMLLWVAILALFGGLVAAFGNNLPLS 120 Query: 121 LRAHVLAVQAWVASAFYLFILITSNPFLRIANPPLEGRDLNPVLQDIGLAVHPPMLYLGY 180 LRAHVLAVQ WVA+AFYLFILITSNPF RIAN P EGRDLNPVLQDIGLAVHPPMLYLGY Sbjct: 121 LRAHVLAVQGWVATAFYLFILITSNPFARIANAPAEGRDLNPVLQDIGLAVHPPMLYLGY 180 Query: 181 VGFSISFSFAVAALLEGRIDAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGGWWF 240 VGFSISFSFA AAL+EGR+DAAWARWVRPWTL+AWIFLTLGIAMGSYWAYYELGWGGWWF Sbjct: 181 VGFSISFSFAAAALMEGRLDAAWARWVRPWTLVAWIFLTLGIAMGSYWAYYELGWGGWWF 240 Query: 241 WDPVENASLMPWLAGTALLHSALVMEKRNALKVWTVLLSILTFSLSLLGTFLVRSGVLTS 300 WDPVENASLMPWLAGTALLHSALVMEKRNALKVWT+LLSILTFSLSLLGTFLVRSGVLTS Sbjct: 241 WDPVENASLMPWLAGTALLHSALVMEKRNALKVWTILLSILTFSLSLLGTFLVRSGVLTS 300 Query: 301 VHAFATDPTRGVFILLILFVFIGGSLSLYAWRAPALKQGGLFAPISREGALVLNNLLLTT 360 VHAFATDP+RGVFIL+IL VFIGGSL+L+AWRA +LKQGGLFAPISREG+LVLNNL LTT Sbjct: 301 VHAFATDPSRGVFILIILCVFIGGSLTLFAWRASSLKQGGLFAPISREGSLVLNNLFLTT 360 Query: 361 ACATVFIGTLYPLALEVLTGEKISVGAPFFNFTFAPLFVPLLLAVPFGPLLAWKRGDLLG 420 ACATVF+GTLYPLALEVLTG+KISVGAPFFN TF PL VPLL+AVPFGPLLAWKRGDL+G Sbjct: 361 ACATVFVGTLYPLALEVLTGDKISVGAPFFNLTFGPLMVPLLVAVPFGPLLAWKRGDLVG 420 Query: 421 AAQRLMLAGIVALVAMALVLAWTYGGATLAPLAIGLAV 458 AAQRL+ AG+VAL+A+A V AW +GGA LAPLAIGLAV Sbjct: 421 AAQRLIAAGVVALLAVAFVYAWVHGGAVLAPLAIGLAV 458