BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0248.0014.p (350 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_576536.1| PAS/PAC sensor signal transduction histidine ki... 552 e-155 ref|YP_568585.1| histidine kinase A-like [Rhodopseudomonas palus... 543 e-152 ref|YP_533787.1| PAS/PAC sensor signal transduction histidine ki... 542 e-152 ref|ZP_01047087.1| Signal transduction histidine kinase [Nitroba... 540 e-151 ref|YP_004110629.1| PAS/PAC sensor signal transduction histidine... 532 e-149 >ref|YP_576536.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] gb|ABE62076.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] Length = 1031 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 274/351 (78%), Positives = 303/351 (86%), Gaps = 1/351 (0%) Query: 1 MFDAEGNIHSCNRSAEALFGYDGDEFVTRKLADLFAPESQHGIFDYLSSLKSAGVASLLD 60 MFD G I +CNRSAEALFG+ GD LADLFAPES+ + DYL+ + GVASLLD Sbjct: 679 MFDDGGRITACNRSAEALFGHSGDSLTQFNLADLFAPESEGAVRDYLNGIVGNGVASLLD 738 Query: 61 HGRETLGRVRQGGIIPLSVTMGRTRADGPNFFAVFRDLSQTRKSEGELREARRLAERAAN 120 HGRE LGRVR+GG+IPLS+TMGRT+ADGPNFFAVFRDLSQ +K E EL +ARR A+RAAN Sbjct: 739 HGREVLGRVREGGLIPLSMTMGRTQADGPNFFAVFRDLSQAKKIETELSQARRQADRAAN 798 Query: 121 AKSDMLARISHELRTPLNAIIGFAEVMIGERFGALGNERYVEYMKDIRASGERVIAIVND 180 AK+D+LARISHE+RTPLNAIIGFAEVM E+FGALGNERYVEYMKDIRASGER+IA ++D Sbjct: 799 AKADVLARISHEIRTPLNAIIGFAEVMTDEKFGALGNERYVEYMKDIRASGERIIAFIDD 858 Query: 181 LLDLSRIETGKLDLAFASQNLNEMVESCVAVMQPQANRERIIIRTSLAHTLPPVVADARA 240 LLDLSRIETGKLDLAF +QNLNE+VE CVAVMQPQANRERIIIRTSLAHTLPP+VADA A Sbjct: 859 LLDLSRIETGKLDLAFVNQNLNELVEQCVAVMQPQANRERIIIRTSLAHTLPPIVADAHA 918 Query: 241 LRQITLNLIGNSIHLANAGGQVIVSTALSDFGEVMLRVRDTGQSLNDNEVAAALEPFRAP 300 LRQI LNLIGNSIHLANAGGQVIVSTAL+DFG+V LRVRDTG LN+NE+AAA EPFR P Sbjct: 919 LRQIALNLIGNSIHLANAGGQVIVSTALNDFGDVALRVRDTGHGLNENELAAATEPFRTP 978 Query: 301 TPSDQAG-SGGVSLSLTKALVEANRAKFQIRTGGRTGTLIEVTFVHAAARA 350 PSDQA S GVSLSLTKALVEANRA+F IRTG +GTLIEV F A A A Sbjct: 979 APSDQASESAGVSLSLTKALVEANRAQFNIRTGPHSGTLIEVVFAQAKALA 1029 >ref|YP_568585.1| histidine kinase A-like [Rhodopseudomonas palustris BisB5] gb|ABE38684.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB5] Length = 1201 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 260/350 (74%), Positives = 302/350 (86%) Query: 1 MFDAEGNIHSCNRSAEALFGYDGDEFVTRKLADLFAPESQHGIFDYLSSLKSAGVASLLD 60 MFDA+G I +CNRSAEALFGYDGD+ V R +A+LFAPES + DY S+K+ SLLD Sbjct: 852 MFDADGRISACNRSAEALFGYDGDDLVQRNIAELFAPESNGAVLDYFDSVKAGSAESLLD 911 Query: 61 HGRETLGRVRQGGIIPLSVTMGRTRADGPNFFAVFRDLSQTRKSEGELREARRLAERAAN 120 HG E LGRVR+GG++PL++T+GRT+ DGPNFFAVFRDLSQ RK E EL + R+LAERAA Sbjct: 912 HGLEALGRVREGGLLPLTMTIGRTQPDGPNFFAVFRDLSQARKIETELNQVRKLAERAAG 971 Query: 121 AKSDMLARISHELRTPLNAIIGFAEVMIGERFGALGNERYVEYMKDIRASGERVIAIVND 180 AK+D+LAR+SHE+RTPLNAIIGFAEVMI ERFGALGN+RY EYMKDIRASGERVI IV+D Sbjct: 972 AKADVLARLSHEIRTPLNAIIGFAEVMIEERFGALGNDRYGEYMKDIRASGERVIGIVSD 1031 Query: 181 LLDLSRIETGKLDLAFASQNLNEMVESCVAVMQPQANRERIIIRTSLAHTLPPVVADARA 240 LLDLS+IETGKL+L+F SQNLNEMVE CVAVMQP+ANRERIIIRTSLAH LP VVAD +A Sbjct: 1032 LLDLSQIETGKLELSFTSQNLNEMVEQCVAVMQPRANRERIIIRTSLAHLLPTVVADPQA 1091 Query: 241 LRQITLNLIGNSIHLANAGGQVIVSTALSDFGEVMLRVRDTGQSLNDNEVAAALEPFRAP 300 LRQI +NLIG SIHLANAGGQVIVSTALSDFGEV+LRVRDTGQ LN++E+ AAL+PF P Sbjct: 1092 LRQIVMNLIGTSIHLANAGGQVIVSTALSDFGEVVLRVRDTGQRLNESEIVAALQPFNTP 1151 Query: 301 TPSDQAGSGGVSLSLTKALVEANRAKFQIRTGGRTGTLIEVTFVHAAARA 350 PSD++ + GVSLSLTKALVEANRAKF I++ ++GTLIEV F H A+A Sbjct: 1152 APSDRSETSGVSLSLTKALVEANRAKFHIKSAPQSGTLIEVVFSHVPAQA 1201 >ref|YP_533787.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] gb|ABD89468.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 1188 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 268/351 (76%), Positives = 302/351 (86%), Gaps = 1/351 (0%) Query: 1 MFDAEGNIHSCNRSAEALFGYDGDEFVTRKLADLFAPESQHGIFDYLSSLKSAGVASLLD 60 MFDAEG +H CNRSAEALFGY GD V R L +LFAPESQ + DY+ ++KS G ASLLD Sbjct: 838 MFDAEGQLHVCNRSAEALFGYPGDNLVQRNLIELFAPESQRVLLDYIEAIKSDGAASLLD 897 Query: 61 HGRETLGRVRQGGIIPLSVTMGRTRADGPNFFAVFRDLSQTRKSEGELREARRLAERAAN 120 GRE LGRVR+GG+IPLS +GRTR DGPN+FAVFRDLSQ +K+E EL +ARR AERAAN Sbjct: 898 PGREVLGRVREGGLIPLSAIIGRTRHDGPNYFAVFRDLSQAKKTESELIQARRQAERAAN 957 Query: 121 AKSDMLARISHELRTPLNAIIGFAEVMIGERFGALGNERYVEYMKDIRASGERVIAIVND 180 AK+D+LAR+SHE+RTPLNAI+GF EVMI ERFGALGNERYVEYMKDIRASGERVIAIV+D Sbjct: 958 AKADVLARLSHEIRTPLNAILGFTEVMIEERFGALGNERYVEYMKDIRASGERVIAIVSD 1017 Query: 181 LLDLSRIETGKLDLAFASQNLNEMVESCVAVMQPQANRERIIIRTSLAHTLPPVVADARA 240 LLDLSRIETGKL+LAFA Q+LNE+VE CV VMQPQANRERIIIRTSLAH LP VVADA+A Sbjct: 1018 LLDLSRIETGKLELAFAPQHLNELVEQCVGVMQPQANRERIIIRTSLAHQLPNVVADAQA 1077 Query: 241 LRQITLNLIGNSIHLANAGGQVIVSTALSDFGEVMLRVRDTGQSLNDNEVAAALEPFRAP 300 LRQITLNLIG SIHLANAGGQVIVSTALSDFG+VMLRVRDTG LN++E+AAA+EPFR Sbjct: 1078 LRQITLNLIGTSIHLANAGGQVIVSTALSDFGDVMLRVRDTGSRLNEHELAAAMEPFRTA 1137 Query: 301 TPSDQAG-SGGVSLSLTKALVEANRAKFQIRTGGRTGTLIEVTFVHAAARA 350 PSD + + GVSLSLTKALVEANRA+F I+T +GTLIEV F A +A Sbjct: 1138 PPSDHSSEAPGVSLSLTKALVEANRAQFHIKTAPHSGTLIEVIFSDAMQKA 1188 >ref|ZP_01047087.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] gb|EAQ34992.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] Length = 978 Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust. Identities = 267/351 (76%), Positives = 300/351 (85%), Gaps = 1/351 (0%) Query: 1 MFDAEGNIHSCNRSAEALFGYDGDEFVTRKLADLFAPESQHGIFDYLSSLKSAGVASLLD 60 MFD G I +CNRSAE LFG+ GD L DLFAPESQ + DYL SL ASLLD Sbjct: 626 MFDDGGRITACNRSAETLFGHSGDNLTQHNLVDLFAPESQGAVRDYLKSLMHDDDASLLD 685 Query: 61 HGRETLGRVRQGGIIPLSVTMGRTRADGPNFFAVFRDLSQTRKSEGELREARRLAERAAN 120 HGRE LGR R+ G+IPLS+ MGRT+A+GPNFFAVFRDLSQ++K+E EL +ARR AERAAN Sbjct: 686 HGREVLGRAREDGLIPLSMIMGRTQAEGPNFFAVFRDLSQSKKAETELSQARRQAERAAN 745 Query: 121 AKSDMLARISHELRTPLNAIIGFAEVMIGERFGALGNERYVEYMKDIRASGERVIAIVND 180 AK+D+LARISHE+R PLN+IIGFAEVMI E+FG+LGNERYVEYMKDIRASGER+IA ++D Sbjct: 746 AKADVLARISHEIRAPLNSIIGFAEVMIDEKFGSLGNERYVEYMKDIRASGERIIAFIDD 805 Query: 181 LLDLSRIETGKLDLAFASQNLNEMVESCVAVMQPQANRERIIIRTSLAHTLPPVVADARA 240 LLDLSRIETGKLDLAF +QNLNE+VE CVAVMQPQANRERIIIRTSLAHTLPPVVADA+A Sbjct: 806 LLDLSRIETGKLDLAFVNQNLNEIVEQCVAVMQPQANRERIIIRTSLAHTLPPVVADAQA 865 Query: 241 LRQITLNLIGNSIHLANAGGQVIVSTALSDFGEVMLRVRDTGQSLNDNEVAAALEPFRAP 300 LRQITLNLIGNSIHLANAGGQVIVSTA++DFG+V LRVRDTGQ L++NE+AAA EPFR P Sbjct: 866 LRQITLNLIGNSIHLANAGGQVIVSTAITDFGDVALRVRDTGQGLSENELAAATEPFRTP 925 Query: 301 TPSDQAG-SGGVSLSLTKALVEANRAKFQIRTGGRTGTLIEVTFVHAAARA 350 PSDQA S GVSLSLTKALVEANRA+F I+TG +GTLIEV F A A Sbjct: 926 APSDQASKSAGVSLSLTKALVEANRAQFHIKTGPHSGTLIEVVFAQTDAPA 976 >ref|YP_004110629.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] gb|ADU45896.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] Length = 1195 Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust. Identities = 260/348 (74%), Positives = 296/348 (85%) Query: 1 MFDAEGNIHSCNRSAEALFGYDGDEFVTRKLADLFAPESQHGIFDYLSSLKSAGVASLLD 60 MFD G I + NRSAEALFG+DGD V L +LFAPES+ + DYL S+KS S+LD Sbjct: 846 MFDEAGQISAANRSAEALFGHDGDALVAHNLIELFAPESRAAVLDYLDSIKSGRAQSVLD 905 Query: 61 HGRETLGRVRQGGIIPLSVTMGRTRADGPNFFAVFRDLSQTRKSEGELREARRLAERAAN 120 HG E LG+VR+GG+ PLS+T+GRTRADGPNFFAVFRDLSQ +++E EL +ARRLAERAA Sbjct: 906 HGLEALGQVREGGLFPLSMTIGRTRADGPNFFAVFRDLSQVQRTETELSQARRLAERAAG 965 Query: 121 AKSDMLARISHELRTPLNAIIGFAEVMIGERFGALGNERYVEYMKDIRASGERVIAIVND 180 AK+D+LAR+SHE+R PLNAIIGFAEVMI ERFG LGNERYV+YMKDIRASGERVI IV+D Sbjct: 966 AKADVLARLSHEIRAPLNAIIGFAEVMIEERFGPLGNERYVDYMKDIRASGERVIGIVDD 1025 Query: 181 LLDLSRIETGKLDLAFASQNLNEMVESCVAVMQPQANRERIIIRTSLAHTLPPVVADARA 240 LLDLSRIETGKLDLAFAS NLNE+VE VAVMQP+ANRERIIIRTSLAH LP VVADA+A Sbjct: 1026 LLDLSRIETGKLDLAFASVNLNELVEQSVAVMQPRANRERIIIRTSLAHLLPAVVADAQA 1085 Query: 241 LRQITLNLIGNSIHLANAGGQVIVSTALSDFGEVMLRVRDTGQSLNDNEVAAALEPFRAP 300 LRQI +NLIG SIHLANAGGQVIVSTALSD GEVMLR+RDTG LND+E+AAAL+PFR P Sbjct: 1086 LRQIIMNLIGTSIHLANAGGQVIVSTALSDVGEVMLRIRDTGSRLNDDELAAALQPFRTP 1145 Query: 301 TPSDQAGSGGVSLSLTKALVEANRAKFQIRTGGRTGTLIEVTFVHAAA 348 PSD+ + GVSLSLTKALVEANRA F I++ ++GTLIEV F HA A Sbjct: 1146 APSDRTEAAGVSLSLTKALVEANRATFHIKSAPQSGTLIEVVFAHAPA 1193