BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0248.0011.p (217 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770517.1| transcriptional regulator [Bradyrhizobium japon... 401 e-110 ref|YP_001767526.1| GntR family transcriptional regulator [Methy... 258 4e-67 ref|YP_001766673.1| GntR family transcriptional regulator [Methy... 244 9e-63 ref|ZP_07027517.1| transcriptional regulator, GntR family [Afipi... 229 2e-58 ref|ZP_08273363.1| Transcriptional regulator, GntR family [Oxalo... 215 3e-54 >ref|NP_770517.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC49142.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 217 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 196/217 (90%), Positives = 207/217 (95%) Query: 1 MILLRENIYENLRSDILSCQLAPGDEIREQDLAERYAVSRQPVRDALLRLEREHLVTVQP 60 MILLRENIY+ LRSDIL+C+ APGDE+REQDLAERY VSRQPVRDALLRL+REHLVTVQP Sbjct: 1 MILLRENIYDRLRSDILACRFAPGDEMREQDLAERYEVSRQPVRDALLRLQREHLVTVQP 60 Query: 61 RQGYRVNPISLSDARDLLRFRLALEPACVAEAIESAPDSILKSLDEFRRFSGSHEDFITY 120 RQGYRV PISL+DARDLLRFRLALEPACVAEAIESAPDS+LKSLDEFRRF+G+HEDFI Y Sbjct: 61 RQGYRVTPISLADARDLLRFRLALEPACVAEAIESAPDSVLKSLDEFRRFAGNHEDFIAY 120 Query: 121 NRGFHSALAHASGNRRMATTLCDLIGQADRLVRVSVSNLKGHDPAKLVAEHVALIDAMQQ 180 NR FHSALAHASGNRRMAT LCDLIGQADRLVRVS+SNL+GHDPAKLVAEHVALIDAMQ Sbjct: 121 NRAFHSALAHASGNRRMATALCDLIGQADRLVRVSISNLRGHDPAKLVAEHVALIDAMQS 180 Query: 181 REARTAARIIKAHIAATEKRVLPALKRNAVIVEERSS 217 RE RTAARIIKAHI ATEKRVLPALKRNAVIVEERSS Sbjct: 181 RETRTAARIIKAHIGATEKRVLPALKRNAVIVEERSS 217 >ref|YP_001767526.1| GntR family transcriptional regulator [Methylobacterium sp. 4-46] gb|ACA15092.1| transcriptional regulator, GntR family [Methylobacterium sp. 4-46] Length = 220 Score = 258 bits (659), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 132/212 (62%), Positives = 172/212 (81%), Gaps = 1/212 (0%) Query: 1 MILLRENIYENLRSDILSCQLAPGDEIREQDLAERYAVSRQPVRDALLRLEREHLVTVQP 60 ++LLR+ IYE +R++IL+C++ PG E+REQ+LAER+ VSRQPVR+ALLRLERE LVTV P Sbjct: 10 IVLLRDTIYEAIRAEILTCRVPPGAEVREQELAERFEVSRQPVREALLRLERERLVTVHP 69 Query: 61 RQGYRVNPISLSDARDLLRFRLALEPACVAEAIESAPDSILKSLDEFRRFSGSHEDFITY 120 RQGY+VNPIS++DARDLL+FRL +EPAC EA ESAP ++L LD FR DFI Y Sbjct: 70 RQGYQVNPISVADARDLLQFRLVVEPACAGEAAESAPPAVLAGLDAFRELPEGG-DFIAY 128 Query: 121 NRGFHSALAHASGNRRMATTLCDLIGQADRLVRVSVSNLKGHDPAKLVAEHVALIDAMQQ 180 NR FH+ALA ASGNRRMA DLI QADRLVRVS++ ++G DPA+L+AEH +IDA+Q+ Sbjct: 129 NRAFHTALAEASGNRRMAAVTRDLIEQADRLVRVSLATIRGRDPAQLIAEHAGIIDAVQR 188 Query: 181 REARTAARIIKAHIAATEKRVLPALKRNAVIV 212 R+AR A R ++ H+A E+R++PAL+R+AVI+ Sbjct: 189 RDARAARRRVRDHVARAERRIIPALERSAVIL 220 >ref|YP_001766673.1| GntR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gb|ACB27871.1| transcriptional regulator, GntR family [Methylobacterium radiotolerans JCM 2831] Length = 210 Score = 244 bits (622), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 133/211 (63%), Positives = 170/211 (80%), Gaps = 1/211 (0%) Query: 2 ILLRENIYENLRSDILSCQLAPGDEIREQDLAERYAVSRQPVRDALLRLEREHLVTVQPR 61 +LLR+NIY +R+DIL+C L PG E+REQ+LA+RYAVSRQPVR+ALLRLERE LVTV R Sbjct: 1 MLLRDNIYAAIRADILACVLRPGAEVREQELAQRYAVSRQPVREALLRLERERLVTVHAR 60 Query: 62 QGYRVNPISLSDARDLLRFRLALEPACVAEAIESAPDSILKSLDEFRRFSGSHEDFITYN 121 QGY++N IS++DARDLLR RLALEPAC AEA APDS++ SLD FR + DFI N Sbjct: 61 QGYQINAISVADARDLLRMRLALEPACAAEAAAGAPDSVVASLDAFRTVADG-ADFIAEN 119 Query: 122 RGFHSALAHASGNRRMATTLCDLIGQADRLVRVSVSNLKGHDPAKLVAEHVALIDAMQQR 181 R FH ALA ASGNRRMA T+ DL+ QADRLVRVS+ ++G DPA+LV EH A+IDA+Q+R Sbjct: 120 RAFHIALAEASGNRRMAATVRDLVEQADRLVRVSLDGIRGRDPAQLVDEHAAIIDAVQRR 179 Query: 182 EARTAARIIKAHIAATEKRVLPALKRNAVIV 212 + R A R+++AH+A E+R+L AL+R+A+++ Sbjct: 180 DGRGARRLVRAHVAQAERRILTALERSAIVL 210 >ref|ZP_07027517.1| transcriptional regulator, GntR family [Afipia sp. 1NLS2] gb|EFI51273.1| transcriptional regulator, GntR family [Afipia sp. 1NLS2] Length = 221 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 113/200 (56%), Positives = 146/200 (73%), Gaps = 1/200 (0%) Query: 8 IYENLRSDILSCQLAPGDEIREQDLAERYAVSRQPVRDALLRLEREHLVTVQPRQGYRVN 67 IY+ L+ IL+C+L PG ++REQ+LA+++ VS+ PVR+AL L R+ LVTV PRQGYRV+ Sbjct: 16 IYDELKRGILTCELPPGTDLREQELAQQFEVSKSPVREALQHLVRDGLVTVMPRQGYRVS 75 Query: 68 PISLSDARDLLRFRLALEPACVAEAIESAPDSILKSLDEFRRFSGSHE-DFITYNRGFHS 126 PISL+DARD+ FR ALE ACV EA ++A D LK+LD FR F G E +FI YNR FH Sbjct: 76 PISLTDARDMFTFRCALEVACVVEAAKNASDEQLKALDRFRHFHGKSESEFIAYNRDFHC 135 Query: 127 ALAHASGNRRMATTLCDLIGQADRLVRVSVSNLKGHDPAKLVAEHVALIDAMQQREARTA 186 ALA SGN RM T CDLI +ADRL R+SV++L+GH+P KL EH A+I A+Q R +R A Sbjct: 136 ALARCSGNGRMTRTTCDLIEEADRLTRMSVASLRGHNPDKLAEEHSAIITALQARNSRLA 195 Query: 187 ARIIKAHIAATEKRVLPALK 206 A ++K H+ A KR AL+ Sbjct: 196 ANLMKKHVTAAVKRFSAALE 215 >ref|ZP_08273363.1| Transcriptional regulator, GntR family [Oxalobacteraceae bacterium IMCC9480] gb|EGF33167.1| Transcriptional regulator, GntR family [Oxalobacteraceae bacterium IMCC9480] Length = 211 Score = 215 bits (548), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 109/210 (51%), Positives = 144/210 (68%), Gaps = 2/210 (0%) Query: 4 LRENIYENLRSDILSCQLAPGDEIREQDLAERYAVSRQPVRDALLRLEREHLVTVQPRQG 63 +RE+ Y LR+DILSC L PG EIRE +LA R+ VS+ PVRDAL+RLERE LV PRQG Sbjct: 1 MRESAYAQLRADILSCALPPGAEIREAELAARFQVSKSPVRDALMRLEREGLVISTPRQG 60 Query: 64 YRVNPISLSDARDLLRFRLALEPACVAEAIESAPDSILKSLDEFRRFSGSH--EDFITYN 121 YRV PIS++D +D+ R+ALE AC+ + +A D+ L++L+ FR+F + E F+ YN Sbjct: 61 YRVAPISVTDVQDMFHLRVALERACMERIVRNASDAQLQTLEPFRQFDAAQWSEGFVGYN 120 Query: 122 RGFHSALAHASGNRRMATTLCDLIGQADRLVRVSVSNLKGHDPAKLVAEHVALIDAMQQR 181 R FH LA GN RM L DLI Q +R VRVSVSN+K +P LV EH LIDA+QQR Sbjct: 121 RSFHHTLAALGGNLRMQNHLIDLIDQMERAVRVSVSNVKKGNPESLVDEHCQLIDALQQR 180 Query: 182 EARTAARIIKAHIAATEKRVLPALKRNAVI 211 + + A R+ + H++A KRV A+ R A++ Sbjct: 181 KTKRAERVAEQHVSAAAKRVNDAISRFAIV 210