BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0248.0006.p (335 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_02382747.1| transcriptional regulator, AraC family protei... 405 e-111 ref|ZP_02463883.1| transcriptional regulator, AraC family protei... 382 e-104 ref|ZP_03263806.1| transcriptional regulator, AraC family [Burkh... 379 e-103 ref|YP_372976.1| transcriptional regulator [Burkholderia sp. 383... 376 e-102 ref|YP_003609067.1| AraC family transcriptional regulator [Burkh... 371 e-101 >ref|ZP_02382747.1| transcriptional regulator, AraC family protein [Burkholderia ubonensis Bu] Length = 343 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 208/330 (63%), Positives = 251/330 (76%), Gaps = 4/330 (1%) Query: 1 MPLIRIWVYDGILASGVAGIVDVFTAANSVTARRPRRRSDMPSQLRWRVESLNGRPVQTA 60 M ++RIWVYDGILASGVAG +DVF AANS+ A +L WRVESL+G+PV+ A Sbjct: 1 MAIVRIWVYDGILASGVAGPIDVFNAANSLGAST----CTSSPKLVWRVESLDGQPVRAA 56 Query: 61 SGQVIGVDGPIGARSSADAVVIPGPFVGDIERFFARLDTVEPLLAALRRQHERGTLLASY 120 SGQ I VDG I AR ADA+++ PFV D++ F AR D V L +ALRRQH+ GTLLASY Sbjct: 57 SGQAIAVDGRIDARKRADAILVTAPFVADMDTFLARGDRVRALSSALRRQHQAGTLLASY 116 Query: 121 CTGSFILAEAGLLDGRVATTHWAKGRTFAMRYPAVDLRVAEILTEQNRIVCSGAVTTSLN 180 CTGS++LAEAGLLDGR+ATTHWA+ F RYP V+LR E+LTEQ IVCSGAVT+ LN Sbjct: 117 CTGSYLLAEAGLLDGRIATTHWARATDFLRRYPKVELRAHEVLTEQAGIVCSGAVTSYLN 176 Query: 181 LALRLVEKFAGADVAAETGKLMLIDSNRISQASYVSRTSDTQHSDALVARAQSLMEKSLQ 240 LALR+VE+ A +AA KL+LID NR SQASY + D H+D LVARAQ ME +L+ Sbjct: 177 LALRVVERLADPRLAARVAKLLLIDVNRASQASYATLLDDHGHTDPLVARAQRRMEATLR 236 Query: 241 RGFSLARLARDLSVSERTLNRRFKLAVGEAPLQYLQALRVDVAKRLIETTRLKLDAVSGR 300 + F LA LA +L+VSERTLNRRF+ AVG+APL YLQ LRV+VAKRL+E + LDA+ + Sbjct: 237 QRFRLADLAAELAVSERTLNRRFRQAVGDAPLGYLQTLRVEVAKRLLEAGNVGLDAIGEQ 296 Query: 301 VGYNDLSTFRRLFKRETGLSPREYQRRFVR 330 VGY DLSTFR+LFKR+TGLSPREYQRRF + Sbjct: 297 VGYGDLSTFRQLFKRKTGLSPREYQRRFAQ 326 >ref|ZP_02463883.1| transcriptional regulator, AraC family protein [Burkholderia thailandensis MSMB43] Length = 330 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/332 (58%), Positives = 244/332 (73%), Gaps = 4/332 (1%) Query: 1 MPLIRIWVYDGILASGVAGIVDVFTAANSVTARRPRRRSDMPSQLRWRVESLNGRPVQTA 60 MPLIRIW + LASGVA +D+ TAAN + + R P WRVES++G+PV+ A Sbjct: 1 MPLIRIWAVEHCLASGVAAPIDILTAANRLATQADGERHARP--FTWRVESIDGKPVRAA 58 Query: 61 SGQVIGVDGPIGARSSADAVVIPGPFVGDIERFFARLDTVEPLLAALRRQHERGTLLASY 120 SGQ+I VDG I RS ADAV + GPFV DI+R +R + PL+ ALRRQH RGTLLA+Y Sbjct: 59 SGQIIQVDGRIDGRSVADAVWLTGPFVSDIDRILSRPARLAPLVDALRRQHARGTLLATY 118 Query: 121 CTGSFILAEAGLLDGRVATTHWAKGRTFAMRYPAVDLRVAEILTEQNRIVCSGAVTTSLN 180 CTG+F+LAEAGLLD RVATTHW+K +F MRYP V+LR A++LTEQ+ I+C GAVT+ N Sbjct: 119 CTGAFLLAEAGLLDARVATTHWSKAASFRMRYPEVELRAADVLTEQDGILCGGAVTSYQN 178 Query: 181 LALRLVEKFAGADVAAETGKLMLIDSNRISQASYVS--RTSDTQHSDALVARAQSLMEKS 238 LALR+V+K +AA T K+MLID NR+SQ S++ R +H D +VARAQ ME+ Sbjct: 179 LALRVVDKLGTPKLAAATAKIMLIDLNRVSQDSFIDLHRADGLEHDDPVVARAQRWMERH 238 Query: 239 LQRGFSLARLARDLSVSERTLNRRFKLAVGEAPLQYLQALRVDVAKRLIETTRLKLDAVS 298 L+ F L RL+R L++SERT+NRRFK AVG PL+YLQ LR++VAKRL+E +L +DAV Sbjct: 239 LREPFDLPRLSRHLALSERTVNRRFKQAVGTPPLKYLQTLRIEVAKRLLEQKKLGIDAVC 298 Query: 299 GRVGYNDLSTFRRLFKRETGLSPREYQRRFVR 330 RVGY D+S FR+LFKR TG+SP EY+RRF R Sbjct: 299 ERVGYTDVSGFRQLFKRVTGISPGEYRRRFAR 330 >ref|ZP_03263806.1| transcriptional regulator, AraC family [Burkholderia sp. H160] gb|EEA04550.1| transcriptional regulator, AraC family [Burkholderia sp. H160] Length = 344 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 193/332 (58%), Positives = 243/332 (73%) Query: 1 MPLIRIWVYDGILASGVAGIVDVFTAANSVTARRPRRRSDMPSQLRWRVESLNGRPVQTA 60 M ++RIWVYDGILASGVAG VDVF+AAN AR+ + WRVESL+G PV++A Sbjct: 1 MAIVRIWVYDGILASGVAGPVDVFSAANQFHARKTAPGTTSAPVFVWRVESLDGHPVRSA 60 Query: 61 SGQVIGVDGPIGARSSADAVVIPGPFVGDIERFFARLDTVEPLLAALRRQHERGTLLASY 120 SGQ I VDG I R ADAV++ PF +I+ F R + + L +ALRRQ + GT+LA+Y Sbjct: 61 SGQTIYVDGKIDPRKRADAVLLTAPFFSNIDEFIGRREQLNELSSALRRQRKAGTVLAAY 120 Query: 121 CTGSFILAEAGLLDGRVATTHWAKGRTFAMRYPAVDLRVAEILTEQNRIVCSGAVTTSLN 180 CT +++LAEAGLLDGR ATTHWA+ FA RYP V++R E+L Q+ I+ G+VT+ LN Sbjct: 121 CTANYLLAEAGLLDGRAATTHWARASDFAHRYPRVEVRAHELLIAQDGIISGGSVTSYLN 180 Query: 181 LALRLVEKFAGADVAAETGKLMLIDSNRISQASYVSRTSDTQHSDALVARAQSLMEKSLQ 240 LA+RLVE FAG ++A T K +LID NR SQAS+ + + H+D LVARAQ ME +LQ Sbjct: 181 LAVRLVETFAGEELATMTAKALLIDMNRTSQASFATLLDEHGHTDTLVARAQQQMEATLQ 240 Query: 241 RGFSLARLARDLSVSERTLNRRFKLAVGEAPLQYLQALRVDVAKRLIETTRLKLDAVSGR 300 +GF L+ LA L+VSERTLNRRFK AVG APL YLQ LR++VAKRL+ET + L+AVS R Sbjct: 241 QGFRLSDLAASLAVSERTLNRRFKEAVGLAPLTYLQNLRIEVAKRLLETRPIGLEAVSQR 300 Query: 301 VGYNDLSTFRRLFKRETGLSPREYQRRFVRRA 332 VGY D+STFR+LFKR+TGLSP EY+ R R A Sbjct: 301 VGYGDISTFRQLFKRKTGLSPSEYRMRSSRGA 332 >ref|YP_372976.1| transcriptional regulator [Burkholderia sp. 383] gb|ABB12332.1| transcriptional regulator, AraC family with amidase-like domain [Burkholderia sp. 383] Length = 330 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 191/332 (57%), Positives = 240/332 (72%), Gaps = 4/332 (1%) Query: 1 MPLIRIWVYDGILASGVAGIVDVFTAANSVTARRPRRRSDMPSQLRWRVESLNGRPVQTA 60 MPLIRIW + LASGVA DV TAAN + + + R+ P RW VES+ GRPV+ A Sbjct: 1 MPLIRIWAVEHALASGVAAPTDVLTAANHLASTTSQARASAP--FRWCVESIGGRPVRAA 58 Query: 61 SGQVIGVDGPIGARSSADAVVIPGPFVGDIERFFARLDTVEPLLAALRRQHERGTLLASY 120 SGQVI VDG I S ADA+ + PFV D+ER R + PL ALRRQH RGTL+A+Y Sbjct: 59 SGQVIPVDGVIDGSSPADAIWLTSPFVADLERLLDRPAALAPLFDALRRQHARGTLIATY 118 Query: 121 CTGSFILAEAGLLDGRVATTHWAKGRTFAMRYPAVDLRVAEILTEQNRIVCSGAVTTSLN 180 CTG+F+LAEAGLLDGRVATTHW+K +F RYP V LR ++ILTEQ+ I+C GA+T+ N Sbjct: 119 CTGAFLLAEAGLLDGRVATTHWSKASSFRARYPDVALRASDILTEQDGILCGGAITSYQN 178 Query: 181 LALRLVEKFAGADVAAETGKLMLIDSNRISQASYVS--RTSDTQHSDALVARAQSLMEKS 238 LALR+V+K A A +AA +LMLID NR+SQ S++ R H DA +ARAQ MEK Sbjct: 179 LALRIVDKLANARLAASVARLMLIDMNRVSQDSFIELDRMGHRGHDDATIARAQRWMEKH 238 Query: 239 LQRGFSLARLARDLSVSERTLNRRFKLAVGEAPLQYLQALRVDVAKRLIETTRLKLDAVS 298 L+ FSLARL+ +++SERTL+RRFK AVG PL+YLQ LR++VAKRL+ T+L +D + Sbjct: 239 LREPFSLARLSDHVAMSERTLHRRFKDAVGAPPLRYLQTLRIEVAKRLLAETKLAIDTIC 298 Query: 299 GRVGYNDLSTFRRLFKRETGLSPREYQRRFVR 330 RVGY D+S FR+LFKRETG+SP EY+RRF + Sbjct: 299 ERVGYADISGFRQLFKRETGISPGEYRRRFTQ 330 >ref|YP_003609067.1| AraC family transcriptional regulator [Burkholderia sp. CCGE1002] gb|ADG19556.1| transcriptional regulator, AraC family [Burkholderia sp. CCGE1002] Length = 357 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 189/330 (57%), Positives = 238/330 (72%) Query: 1 MPLIRIWVYDGILASGVAGIVDVFTAANSVTARRPRRRSDMPSQLRWRVESLNGRPVQTA 60 M ++RIWVYDGILASGVAG VDVF+AAN AR+ + WRVESL+GRPV A Sbjct: 1 MAIVRIWVYDGILASGVAGPVDVFSAANQFYARKAATGTTSAPMFVWRVESLDGRPVTAA 60 Query: 61 SGQVIGVDGPIGARSSADAVVIPGPFVGDIERFFARLDTVEPLLAALRRQHERGTLLASY 120 SGQ I VDG I R ADAV++ PF +I+ F R + + L +ALRRQ + G +LA+Y Sbjct: 61 SGQTIQVDGKIDPRKRADAVLLTAPFFSNIDEFIGRREQLNELSSALRRQRKAGAVLAAY 120 Query: 121 CTGSFILAEAGLLDGRVATTHWAKGRTFAMRYPAVDLRVAEILTEQNRIVCSGAVTTSLN 180 CT +++LAEAGLLDGR ATTHWA+ F RYP V++R E+L Q+ I+ G+VT+ LN Sbjct: 121 CTANYLLAEAGLLDGRAATTHWARAADFGRRYPRVEVRAHELLIAQDGIISGGSVTSYLN 180 Query: 181 LALRLVEKFAGADVAAETGKLMLIDSNRISQASYVSRTSDTQHSDALVARAQSLMEKSLQ 240 LA+RLVE FA ++A T K +LID NR SQAS+ + + H+D LVARAQ ME +LQ Sbjct: 181 LAVRLVETFASEELATMTAKALLIDMNRTSQASFATLLDEHGHTDTLVARAQQQMEATLQ 240 Query: 241 RGFSLARLARDLSVSERTLNRRFKLAVGEAPLQYLQALRVDVAKRLIETTRLKLDAVSGR 300 +GF L+ LA L+VSERTLNRRFK AVG APL YLQ LR++VAKRL+ET + L+AVS R Sbjct: 241 QGFRLSDLAASLAVSERTLNRRFKEAVGLAPLAYLQNLRIEVAKRLLETRPIGLEAVSQR 300 Query: 301 VGYNDLSTFRRLFKRETGLSPREYQRRFVR 330 VGY D+STFR+LF+R+TGLSP EY+ R R Sbjct: 301 VGYGDISTFRQLFRRKTGLSPSEYRSRSSR 330