BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0248.0003.p         (235 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_773733.1| 3-oxoadipate CoA-transferase subunit A [Bradyrh...   461   e-128
ref|ZP_01047085.1| coenzyme A transferase [Nitrobacter sp. Nb-31...   456   e-126
ref|YP_576533.1| 3-oxoacid CoA-transferase, subunit A [Nitrobact...   454   e-126
ref|YP_317624.1| coenzyme A transferase [Nitrobacter winogradsky...   453   e-125
ref|YP_568572.1| 3-oxoacid CoA-transferase subunit A [Rhodopseud...   444   e-123

>ref|NP_773733.1| 3-oxoadipate CoA-transferase subunit A [Bradyrhizobium japonicum
           USDA 110]
 dbj|BAC52358.1| 3-oxoadipate CoA-transferase subunit A [Bradyrhizobium japonicum
           USDA 110]
          Length = 235

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/235 (94%), Positives = 231/235 (98%)

Query: 1   MNKVYPDAKSALDGLLKDGMMIMSGGFGLCGIAETLSDAIRESGVKGLTVVSNNAGVDGI 60
           MNKVYPDAKSALDG+LKD MMIMSGGFGLCGIAE LSDAIRESGVKGLTVVSNNAGVDGI
Sbjct: 1   MNKVYPDAKSALDGILKDNMMIMSGGFGLCGIAEELSDAIRESGVKGLTVVSNNAGVDGI 60

Query: 61  GLSRLLETRQIKKMISSYVGENKLFAQQYLAGELELEFNPQGTLAERIRAGGAGIPAFYT 120
           GLSRLLETRQIKKMISSYVGENKLFAQQ+LAGELELEFNPQGTLAERIRAGGAGIPAFYT
Sbjct: 61  GLSRLLETRQIKKMISSYVGENKLFAQQFLAGELELEFNPQGTLAERIRAGGAGIPAFYT 120

Query: 121 KTGVGTLIAEGKEVKEFDGEKYIMERGLFADVAIVHAWKGDTAGNLVYRKTARNFNPMMA 180
           KTGVGTLIAEGKEVKEFDGEKY+MERGLFAD+AIVHAWKGDTAGNL+YRKTARNFNPMMA
Sbjct: 121 KTGVGTLIAEGKEVKEFDGEKYLMERGLFADLAIVHAWKGDTAGNLIYRKTARNFNPMMA 180

Query: 181 TAAKVTVAEVEHLVPAGEIDPDHIHTPGIFVKRIVEVGTGKKRIEFRNTRPRPAA 235
           TAAK+TVAEVEHLVPAGE++PDHIHTPGIFVKRIVEVGT KKRIEFRNTRPR AA
Sbjct: 181 TAAKITVAEVEHLVPAGELNPDHIHTPGIFVKRIVEVGTAKKRIEFRNTRPRTAA 235


>ref|ZP_01047085.1| coenzyme A transferase [Nitrobacter sp. Nb-311A]
 gb|EAQ34990.1| coenzyme A transferase [Nitrobacter sp. Nb-311A]
          Length = 236

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/235 (94%), Positives = 229/235 (97%)

Query: 1   MNKVYPDAKSALDGLLKDGMMIMSGGFGLCGIAETLSDAIRESGVKGLTVVSNNAGVDGI 60
           MNKVYPDAKSALDGLL+DGMMIMSGGFGLCGI ETLSDAIR+SGVK LT VSNNAGVDGI
Sbjct: 1   MNKVYPDAKSALDGLLRDGMMIMSGGFGLCGIPETLSDAIRDSGVKELTFVSNNAGVDGI 60

Query: 61  GLSRLLETRQIKKMISSYVGENKLFAQQYLAGELELEFNPQGTLAERIRAGGAGIPAFYT 120
           GLSRLLETRQI+KMISSYVGENKLFAQQYLAG+LELEFNPQGTLAERIRAGGAGIPAFYT
Sbjct: 61  GLSRLLETRQIRKMISSYVGENKLFAQQYLAGDLELEFNPQGTLAERIRAGGAGIPAFYT 120

Query: 121 KTGVGTLIAEGKEVKEFDGEKYIMERGLFADVAIVHAWKGDTAGNLVYRKTARNFNPMMA 180
           +TGVGTLIAEGKEVKEFDGEKY+MERGLFAD+AIVHAWKGDTAGNLVYRKTARNFNPMMA
Sbjct: 121 RTGVGTLIAEGKEVKEFDGEKYLMERGLFADLAIVHAWKGDTAGNLVYRKTARNFNPMMA 180

Query: 181 TAAKVTVAEVEHLVPAGEIDPDHIHTPGIFVKRIVEVGTGKKRIEFRNTRPRPAA 235
           TAAKVTVAEVEHLVPAGEIDPDHIHTPGIFVKRIVEVG  +K IEFRNTRPRPAA
Sbjct: 181 TAAKVTVAEVEHLVPAGEIDPDHIHTPGIFVKRIVEVGGARKHIEFRNTRPRPAA 235


>ref|YP_576533.1| 3-oxoacid CoA-transferase, subunit A [Nitrobacter hamburgensis X14]
 gb|ABE62073.1| 3-oxoacid CoA-transferase, subunit A [Nitrobacter hamburgensis X14]
          Length = 235

 Score =  454 bits (1167), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/235 (92%), Positives = 228/235 (97%)

Query: 1   MNKVYPDAKSALDGLLKDGMMIMSGGFGLCGIAETLSDAIRESGVKGLTVVSNNAGVDGI 60
           MNKVYPDAKSALDG L DGMMIMSGGFGLCGIAETL+DAIR+SGVK LT+VSNNAGVDG+
Sbjct: 1   MNKVYPDAKSALDGTLTDGMMIMSGGFGLCGIAETLADAIRDSGVKNLTIVSNNAGVDGV 60

Query: 61  GLSRLLETRQIKKMISSYVGENKLFAQQYLAGELELEFNPQGTLAERIRAGGAGIPAFYT 120
           GL RLLETRQIKKMISSYVGENKLFAQQYLAGELELEFNPQGTLAERIRAGGAGIPAF+T
Sbjct: 61  GLGRLLETRQIKKMISSYVGENKLFAQQYLAGELELEFNPQGTLAERIRAGGAGIPAFFT 120

Query: 121 KTGVGTLIAEGKEVKEFDGEKYIMERGLFADVAIVHAWKGDTAGNLVYRKTARNFNPMMA 180
           KTGVGTLIAEGKEV+EFDGEKY+MERGLFAD+AIVHAWKGDTAGNLVYRKTARNFNPMMA
Sbjct: 121 KTGVGTLIAEGKEVREFDGEKYLMERGLFADLAIVHAWKGDTAGNLVYRKTARNFNPMMA 180

Query: 181 TAAKVTVAEVEHLVPAGEIDPDHIHTPGIFVKRIVEVGTGKKRIEFRNTRPRPAA 235
           TAAKVTVAEVEHLVPAGEIDPDHIHTPGIFV+RIVEVG  +K IEFRNTRPRPAA
Sbjct: 181 TAAKVTVAEVEHLVPAGEIDPDHIHTPGIFVQRIVEVGAARKHIEFRNTRPRPAA 235


>ref|YP_317624.1| coenzyme A transferase [Nitrobacter winogradskyi Nb-255]
 gb|ABA04272.1| coenzyme A transferase [Nitrobacter winogradskyi Nb-255]
          Length = 329

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/235 (92%), Positives = 228/235 (97%)

Query: 1   MNKVYPDAKSALDGLLKDGMMIMSGGFGLCGIAETLSDAIRESGVKGLTVVSNNAGVDGI 60
           M KVYPDAKSALDGLL+DGMMIMSGGFGLCGI ETLS+AIR+SGVK LT VSNNAGVDGI
Sbjct: 94  MKKVYPDAKSALDGLLRDGMMIMSGGFGLCGIPETLSEAIRDSGVKDLTFVSNNAGVDGI 153

Query: 61  GLSRLLETRQIKKMISSYVGENKLFAQQYLAGELELEFNPQGTLAERIRAGGAGIPAFYT 120
           GLSRLLETRQI+KMISSYVGENKLFAQQYLAG+LELEFNPQGTLAERIRAGGAGIPAFYT
Sbjct: 154 GLSRLLETRQIRKMISSYVGENKLFAQQYLAGDLELEFNPQGTLAERIRAGGAGIPAFYT 213

Query: 121 KTGVGTLIAEGKEVKEFDGEKYIMERGLFADVAIVHAWKGDTAGNLVYRKTARNFNPMMA 180
           KTGVGTLIAEGKEVKEFDG+KY+MERGLFAD+AIVHAWKGDTAGNLVYRKTARNFNPMMA
Sbjct: 214 KTGVGTLIAEGKEVKEFDGQKYLMERGLFADLAIVHAWKGDTAGNLVYRKTARNFNPMMA 273

Query: 181 TAAKVTVAEVEHLVPAGEIDPDHIHTPGIFVKRIVEVGTGKKRIEFRNTRPRPAA 235
           TAAKVTVAEVEHLVPAGEIDPDH+HTPGIFVKRIVEVG  +K IEFRNTRPRPAA
Sbjct: 274 TAAKVTVAEVEHLVPAGEIDPDHVHTPGIFVKRIVEVGGARKHIEFRNTRPRPAA 328


>ref|YP_568572.1| 3-oxoacid CoA-transferase subunit A [Rhodopseudomonas palustris
           BisB5]
 gb|ABE38671.1| 3-oxoacid CoA-transferase, subunit A [Rhodopseudomonas palustris
           BisB5]
          Length = 238

 Score =  444 bits (1142), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/235 (90%), Positives = 228/235 (97%)

Query: 1   MNKVYPDAKSALDGLLKDGMMIMSGGFGLCGIAETLSDAIRESGVKGLTVVSNNAGVDGI 60
           MNKVYPDA++AL G+L+DGMMIMSGGFGLCGIAETLSDA+RESGVK LTVVSNNAGVDGI
Sbjct: 1   MNKVYPDAETALAGILRDGMMIMSGGFGLCGIAETLSDALRESGVKDLTVVSNNAGVDGI 60

Query: 61  GLSRLLETRQIKKMISSYVGENKLFAQQYLAGELELEFNPQGTLAERIRAGGAGIPAFYT 120
           GLSRLLETRQIKKMISSYVGENKLFAQQ+LAGELELEF PQGTLAERIRAGGAGIPAF+T
Sbjct: 61  GLSRLLETRQIKKMISSYVGENKLFAQQFLAGELELEFAPQGTLAERIRAGGAGIPAFFT 120

Query: 121 KTGVGTLIAEGKEVKEFDGEKYIMERGLFADVAIVHAWKGDTAGNLVYRKTARNFNPMMA 180
           KTGVGTL+AEGKEV+EFDGEKY+MERGLFAD+AIVHAWKGDTAGNLVYRKTARNFNPMMA
Sbjct: 121 KTGVGTLVAEGKEVREFDGEKYVMERGLFADLAIVHAWKGDTAGNLVYRKTARNFNPMMA 180

Query: 181 TAAKVTVAEVEHLVPAGEIDPDHIHTPGIFVKRIVEVGTGKKRIEFRNTRPRPAA 235
           TAAK+T+AEVEHLVPAGEIDPDHIHTPGIFV+RI++VGTGKKRIE R TR RP A
Sbjct: 181 TAAKITIAEVEHLVPAGEIDPDHIHTPGIFVQRIIDVGTGKKRIEQRTTRKRPEA 235