BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0247.0050.p         (85 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_782456.1| hypothetical protein RPE_3546 [Rhodopseudomonas...    58   5e-07
ref|YP_533261.1| hypothetical protein RPC_3402 [Rhodopseudomonas...    50   8e-05
ref|ZP_08630354.1| hypothetical protein CSIRO_3460 [Bradyrhizobi...    49   2e-04
ref|YP_001992598.1| hypothetical protein Rpal_3623 [Rhodopseudom...    46   0.002
ref|YP_004108547.1| hypothetical protein Rpdx1_2222 [Rhodopseudo...    44   0.009

>ref|YP_782456.1| hypothetical protein RPE_3546 [Rhodopseudomonas palustris BisA53]
 gb|ABJ07476.1| hypothetical protein RPE_3546 [Rhodopseudomonas palustris BisA53]
          Length = 150

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 42/60 (70%), Gaps = 10/60 (16%)

Query: 29  RIEVPAIPRMDA----PTQPSLRSRPRSSFGDRVSRCLDEAAPA--RPPXRAAYSRSCAN 82
           +IEVPA+P++DA    PT P      + SFGDRV +CLD+AA A  +P  RAAYSR+CAN
Sbjct: 94  KIEVPAVPQLDAAPSRPTAPI----AKKSFGDRVIQCLDDAAAAGMKPNQRAAYSRACAN 149


>ref|YP_533261.1| hypothetical protein RPC_3402 [Rhodopseudomonas palustris BisB18]
 gb|ABD88942.1| hypothetical protein RPC_3402 [Rhodopseudomonas palustris BisB18]
          Length = 103

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 37/60 (61%), Gaps = 10/60 (16%)

Query: 29  RIEVPAIPRMDA----PTQPSLRSRPRSSFGDRVSRCLDEAAPA--RPPXRAAYSRSCAN 82
           +IEVP +P++DA    PT P      R SF DRV  CLDE A A   P  RAAYSR+CAN
Sbjct: 47  KIEVPVVPQLDAAPSRPTAPV----ARRSFHDRVVDCLDEGAAAGLGPNQRAAYSRACAN 102


>ref|ZP_08630354.1| hypothetical protein CSIRO_3460 [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP06733.1| hypothetical protein CSIRO_3460 [Bradyrhizobiaceae bacterium SG-6C]
          Length = 123

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 6/62 (9%)

Query: 28  PRIEV----PAIPRMDAPTQPSLRSRPRSSFGDRVSRCLDEAAP--ARPPXRAAYSRSCA 81
           PR E+    P+I   D P +P L+   R SF +RV+RCLD+ A     P  RAAYSR CA
Sbjct: 62  PRFELQNTSPSIVTQDTPPEPVLKRSRRPSFSERVARCLDDGAAWGMNPNQRAAYSRQCA 121

Query: 82  NH 83
           N 
Sbjct: 122 NQ 123


>ref|YP_001992598.1| hypothetical protein Rpal_3623 [Rhodopseudomonas palustris TIE-1]
 gb|ACF02123.1| hypothetical protein Rpal_3623 [Rhodopseudomonas palustris TIE-1]
          Length = 109

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 14/68 (20%)

Query: 30  IEVPAIPRMD------------APTQPSLRSRPRSSFGDRVSRCLDEAAPA--RPPXRAA 75
           I VP +P++             AP  P  + + R  FGDR+SRCLDE A        RAA
Sbjct: 42  ITVPKVPQLASPPPLTHERIQPAPDLPKAQLQQRGHFGDRISRCLDEGAAMGLNASERAA 101

Query: 76  YSRSCANH 83
           YSR+CAN 
Sbjct: 102 YSRACANQ 109


>ref|YP_004108547.1| hypothetical protein Rpdx1_2222 [Rhodopseudomonas palustris DX-1]
 gb|ADU43814.1| hypothetical protein Rpdx1_2222 [Rhodopseudomonas palustris DX-1]
          Length = 129

 Score = 43.9 bits (102), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 14/68 (20%)

Query: 30  IEVPAIPRMDAP------------TQPSLRSRPRSSFGDRVSRCLDEAAPA--RPPXRAA 75
           I VP +P++ AP              P  + + R  FGDR+SRCLDE A        RAA
Sbjct: 62  ITVPKVPQLAAPPPLTHERIQPAPDLPKAQLQQRGHFGDRISRCLDEGAAMGLNASDRAA 121

Query: 76  YSRSCANH 83
           YSR+CA  
Sbjct: 122 YSRACAQQ 129