BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0048.p (283 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08630355.1| ribosomal large subunit pseudouridine synthas... 493 e-137 ref|ZP_07028416.1| pseudouridine synthase, RluA family [Afipia s... 491 e-137 ref|YP_001206582.1| putative ribosomal large subunit pseudouridi... 490 e-137 ref|YP_001240941.1| ribosomal large subunit pseudouridine syntha... 489 e-136 ref|YP_004108546.1| RluA family pseudouridine synthase [Rhodopse... 487 e-136 >ref|ZP_08630355.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06734.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobiaceae bacterium SG-6C] Length = 424 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 231/260 (88%), Positives = 245/260 (94%) Query: 24 TPKTAGALSEAEAKTLQALKDMTLYEDDDVLVLNKPAGLAVQGGSGMTRHVDQMLEVMRD 83 TPK G LSEA KTL+ L+ M L+ED+D++VLNKPAGLAVQGGSGMT+HVDQMLEVMRD Sbjct: 165 TPKAGGELSEAATKTLEELRKMILFEDEDLMVLNKPAGLAVQGGSGMTKHVDQMLEVMRD 224 Query: 84 AKGQKPRLVHRLDRETSGCLLVAKTRFAATHLTGAFRHRSARKIYWALVAGVPKPKQGRI 143 AKGQKPRLVHRLDRETSGCLL+AKTRFAA+ LTG+FRHRSARKIYWALVAGVPKPKQGRI Sbjct: 225 AKGQKPRLVHRLDRETSGCLLIAKTRFAASALTGSFRHRSARKIYWALVAGVPKPKQGRI 284 Query: 144 STYLAKEESEEDSIMRIAEHGDEGASHAVTYYAVVETSATKLAWVSLKPVTGRTHQLRAH 203 STYLAKEESEEDSIMR+AEHGDEGA+HAVTYYAVVE SA KLAWVSLKPVTGRTHQLRAH Sbjct: 285 STYLAKEESEEDSIMRVAEHGDEGAAHAVTYYAVVEASAQKLAWVSLKPVTGRTHQLRAH 344 Query: 204 MAHIDHAIVGDPKYFNKENWQLPGGLQNRLHLLARRIVIPHPRGGVIDATAPLPPHMLQS 263 MAHI+HAIVGDPKYFNKENWQLPGG+Q RLHLLARRIVIPHPRGG ID TAPLPPHMLQS Sbjct: 345 MAHINHAIVGDPKYFNKENWQLPGGIQKRLHLLARRIVIPHPRGGFIDVTAPLPPHMLQS 404 Query: 264 WNLLGLEADRFDPIENAPEE 283 WNLLGLE DRFDPIENAPEE Sbjct: 405 WNLLGLEGDRFDPIENAPEE 424 >ref|ZP_07028416.1| pseudouridine synthase, RluA family [Afipia sp. 1NLS2] gb|EFI50406.1| pseudouridine synthase, RluA family [Afipia sp. 1NLS2] Length = 413 Score = 491 bits (1265), Expect = e-137, Method: Compositional matrix adjust. Identities = 233/259 (89%), Positives = 246/259 (94%) Query: 25 PKTAGALSEAEAKTLQALKDMTLYEDDDVLVLNKPAGLAVQGGSGMTRHVDQMLEVMRDA 84 PKT G LSEA KTL+ L+ M L+ED DV+VLNKPAGLAVQGGSG++RHVDQMLEVMRDA Sbjct: 155 PKTGGNLSEAATKTLEELRKMILFEDADVMVLNKPAGLAVQGGSGLSRHVDQMLEVMRDA 214 Query: 85 KGQKPRLVHRLDRETSGCLLVAKTRFAATHLTGAFRHRSARKIYWALVAGVPKPKQGRIS 144 KGQ+PRLVHRLDRETSGCLL+AKTRFAA+ LTG+FRHRSARKIYWALVAGVPKPKQGRIS Sbjct: 215 KGQRPRLVHRLDRETSGCLLIAKTRFAASVLTGSFRHRSARKIYWALVAGVPKPKQGRIS 274 Query: 145 TYLAKEESEEDSIMRIAEHGDEGASHAVTYYAVVETSATKLAWVSLKPVTGRTHQLRAHM 204 TYLAKEE+EEDSIMRIAEHGDEGA+HAVTYYAVVE SA KLAWVSLKPVTGRTHQLRAHM Sbjct: 275 TYLAKEENEEDSIMRIAEHGDEGAAHAVTYYAVVEASAQKLAWVSLKPVTGRTHQLRAHM 334 Query: 205 AHIDHAIVGDPKYFNKENWQLPGGLQNRLHLLARRIVIPHPRGGVIDATAPLPPHMLQSW 264 AHIDHAIVGDPKYFNKENWQLPGGLQ RLHLLARRIVIPHPRGGVID TAPLPPHMLQSW Sbjct: 335 AHIDHAIVGDPKYFNKENWQLPGGLQKRLHLLARRIVIPHPRGGVIDVTAPLPPHMLQSW 394 Query: 265 NLLGLEADRFDPIENAPEE 283 NLLGLEADRFDPIE+APEE Sbjct: 395 NLLGLEADRFDPIEDAPEE 413 >ref|YP_001206582.1| putative ribosomal large subunit pseudouridine synthase RluC-like protein [Bradyrhizobium sp. ORS 278] emb|CAL78364.1| putative ribosomal large subunit pseudouridine synthase RluC-like (23S RNA pseudouridylate synthase) (RNA-uridine isomerase) [Bradyrhizobium sp. ORS 278] Length = 458 Score = 490 bits (1262), Expect = e-137, Method: Compositional matrix adjust. Identities = 233/259 (89%), Positives = 242/259 (93%) Query: 25 PKTAGALSEAEAKTLQALKDMTLYEDDDVLVLNKPAGLAVQGGSGMTRHVDQMLEVMRDA 84 PK LSE E KTL +LK MTLYEDDDVLVLNKPAGLAVQGGSGMTRH+DQMLEVMRDA Sbjct: 200 PKERAGLSEGERKTLDSLKAMTLYEDDDVLVLNKPAGLAVQGGSGMTRHIDQMLEVMRDA 259 Query: 85 KGQKPRLVHRLDRETSGCLLVAKTRFAATHLTGAFRHRSARKIYWALVAGVPKPKQGRIS 144 KGQKPRLVHR+DRETSGCLL+AKTRFAATHLTGAFRHRSARK+YWALVAGVPKPKQGRIS Sbjct: 260 KGQKPRLVHRIDRETSGCLLIAKTRFAATHLTGAFRHRSARKVYWALVAGVPKPKQGRIS 319 Query: 145 TYLAKEESEEDSIMRIAEHGDEGASHAVTYYAVVETSATKLAWVSLKPVTGRTHQLRAHM 204 TYLAK+E E+D+IMR+A HGDEGASHAVTYYAVVE SA KLAWVSLKPVTGRTHQLRAHM Sbjct: 320 TYLAKDEGEDDTIMRVAAHGDEGASHAVTYYAVVEASANKLAWVSLKPVTGRTHQLRAHM 379 Query: 205 AHIDHAIVGDPKYFNKENWQLPGGLQNRLHLLARRIVIPHPRGGVIDATAPLPPHMLQSW 264 AHI H IVGDPKYFN ENW LPGGLQNRLHLLARRIVIPHPRGGVIDATAPLPPHMLQSW Sbjct: 380 AHIGHPIVGDPKYFNIENWSLPGGLQNRLHLLARRIVIPHPRGGVIDATAPLPPHMLQSW 439 Query: 265 NLLGLEADRFDPIENAPEE 283 NLLGLE DRFDPIENAPEE Sbjct: 440 NLLGLEHDRFDPIENAPEE 458 >ref|YP_001240941.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobium sp. BTAi1] gb|ABQ37035.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobium sp. BTAi1] Length = 458 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 233/259 (89%), Positives = 242/259 (93%) Query: 25 PKTAGALSEAEAKTLQALKDMTLYEDDDVLVLNKPAGLAVQGGSGMTRHVDQMLEVMRDA 84 PK LSEAE KTL++LK MTLYEDDDVLVLNKP GLAVQGGSGMTRH+DQMLEVMRDA Sbjct: 200 PKERAGLSEAERKTLESLKAMTLYEDDDVLVLNKPVGLAVQGGSGMTRHIDQMLEVMRDA 259 Query: 85 KGQKPRLVHRLDRETSGCLLVAKTRFAATHLTGAFRHRSARKIYWALVAGVPKPKQGRIS 144 KGQKPRLVHR+DRETSGCLL+AKTRFAATHLTGAFR RSARKIYWALVAGVPKPKQGRIS Sbjct: 260 KGQKPRLVHRIDRETSGCLLIAKTRFAATHLTGAFRSRSARKIYWALVAGVPKPKQGRIS 319 Query: 145 TYLAKEESEEDSIMRIAEHGDEGASHAVTYYAVVETSATKLAWVSLKPVTGRTHQLRAHM 204 TYLAK+E E+D+IMR+A HGDEGASHAVTYYAVVE SA KLAWVSLKPVTGRTHQLRAHM Sbjct: 320 TYLAKDEGEDDTIMRVAAHGDEGASHAVTYYAVVEASANKLAWVSLKPVTGRTHQLRAHM 379 Query: 205 AHIDHAIVGDPKYFNKENWQLPGGLQNRLHLLARRIVIPHPRGGVIDATAPLPPHMLQSW 264 AHI H IVGDPKYFN ENW LPGGLQNRLHLLARRIVIPHPRGGVIDATAPLPPHMLQSW Sbjct: 380 AHIGHPIVGDPKYFNIENWALPGGLQNRLHLLARRIVIPHPRGGVIDATAPLPPHMLQSW 439 Query: 265 NLLGLEADRFDPIENAPEE 283 NLLGLE DRFDPIENAPEE Sbjct: 440 NLLGLEHDRFDPIENAPEE 458 >ref|YP_004108546.1| RluA family pseudouridine synthase [Rhodopseudomonas palustris DX-1] gb|ADU43813.1| pseudouridine synthase, RluA family [Rhodopseudomonas palustris DX-1] Length = 455 Score = 487 bits (1254), Expect = e-136, Method: Compositional matrix adjust. Identities = 232/260 (89%), Positives = 247/260 (95%) Query: 24 TPKTAGALSEAEAKTLQALKDMTLYEDDDVLVLNKPAGLAVQGGSGMTRHVDQMLEVMRD 83 TPK G LSEAE KTLQAL+DMTL+ED DVLVLNKPAGLAVQGGSG TRH+DQMLEV+RD Sbjct: 196 TPKLPGHLSEAEQKTLQALRDMTLFEDADVLVLNKPAGLAVQGGSGTTRHIDQMLEVLRD 255 Query: 84 AKGQKPRLVHRLDRETSGCLLVAKTRFAATHLTGAFRHRSARKIYWALVAGVPKPKQGRI 143 +KGQKPRLVHR+D+ET+GCLLVAKTRFAAT LTG+FRHRSARKIYWALVAGVPKPKQGRI Sbjct: 256 SKGQKPRLVHRIDKETAGCLLVAKTRFAATALTGSFRHRSARKIYWALVAGVPKPKQGRI 315 Query: 144 STYLAKEESEEDSIMRIAEHGDEGASHAVTYYAVVETSATKLAWVSLKPVTGRTHQLRAH 203 STYLAK+ESEEDSIMR+A+HGD+GASHAVTYYAVVETS KLAWVSLKPVTGRTHQLRAH Sbjct: 316 STYLAKDESEEDSIMRVAKHGDDGASHAVTYYAVVETSGQKLAWVSLKPVTGRTHQLRAH 375 Query: 204 MAHIDHAIVGDPKYFNKENWQLPGGLQNRLHLLARRIVIPHPRGGVIDATAPLPPHMLQS 263 MAHI HAIVGDPKYFN ENWQLPGGLQNRLHLLARRIVIPHPRGGVID +APLPPHMLQS Sbjct: 376 MAHIGHAIVGDPKYFNIENWQLPGGLQNRLHLLARRIVIPHPRGGVIDVSAPLPPHMLQS 435 Query: 264 WNLLGLEADRFDPIENAPEE 283 WNLLGLE DRFDPIE+APEE Sbjct: 436 WNLLGLEHDRFDPIEHAPEE 455