BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0045.p (444 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772007.1| recombination factor protein RarA [Bradyrhizobi... 825 0.0 ref|YP_576854.1| recombination factor protein RarA [Nitrobacter ... 812 0.0 ref|ZP_08630356.1| AAA family ATPase [Bradyrhizobiaceae bacteriu... 811 0.0 ref|YP_570282.1| recombination factor protein RarA [Rhodopseudom... 805 0.0 ref|YP_782466.1| recombination factor protein RarA [Rhodopseudom... 805 0.0 >ref|NP_772007.1| recombination factor protein RarA [Bradyrhizobium japonicum USDA 110] dbj|BAC50632.1| bll5367 [Bradyrhizobium japonicum USDA 110] Length = 445 Score = 825 bits (2131), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/444 (90%), Positives = 425/444 (95%) Query: 1 VSPKQPREAGNLFAAAGMEQDAPHPLPDRLRPRTLADVVGQDHILGPDGALTRMLETRTL 60 +SPK+P+E LFAAAG++ +APHPLPDRLRPR L++VVGQDHILGPDGALTRMLETRTL Sbjct: 1 MSPKRPQETPTLFAAAGLDHEAPHPLPDRLRPRALSEVVGQDHILGPDGALTRMLETRTL 60 Query: 61 GSLVFWGPPGTGKTTVARLLADATELHFEQISAVFSGVADLKKAFDAARARRETGKGTLL 120 GSLVFWGPPGTGKTTVARLLADAT+LHFEQISAVFSGVADLKKAFDAARARRE GKGTLL Sbjct: 61 GSLVFWGPPGTGKTTVARLLADATDLHFEQISAVFSGVADLKKAFDAARARREMGKGTLL 120 Query: 121 FVDEVHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVFHSLDTAAI 180 FVDEVHRFNRAQQDSFLPVMEDGTVV+VGATTENPSFELNAALLSRARVLVF SLD AAI Sbjct: 121 FVDEVHRFNRAQQDSFLPVMEDGTVVMVGATTENPSFELNAALLSRARVLVFRSLDAAAI 180 Query: 181 EKLFANAEKIEGKQLPLDAEARAVLVRMADGDGRASLTLAEEVWRAARKGEVFNAEQLQA 240 EKLFA+AE++EGK+LPLDAEARAVLVRMADGDGRASLTLAEEVWR+AR E+FNA QLQ Sbjct: 181 EKLFAHAEEVEGKKLPLDAEARAVLVRMADGDGRASLTLAEEVWRSARADEIFNAAQLQD 240 Query: 241 ILQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLFLARRVVRMA 300 ILQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLARM DAGEDPLFLARRVVRMA Sbjct: 241 ILQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLARMLDAGEDPLFLARRVVRMA 300 Query: 301 VEDIGLADPQALAVCNAAKEAYDFLGSPEGELAIAQAVVYLATAPKSNAVYTAFGAAMQT 360 VEDIGLADPQAL + NAAK+A+DFLG PEGELAIAQAVVYLATAPKSNAVYTAFGAAMQT Sbjct: 301 VEDIGLADPQALVIANAAKDAFDFLGHPEGELAIAQAVVYLATAPKSNAVYTAFGAAMQT 360 Query: 361 AKQGGSLLPPKHILNSPTKLMKSEGYGSGYQYDHDMPDAFSGQDYFPEALGRQTFYDPPD 420 AKQ GSLLPPKHILNSPTKLMKSEGYG+ Y+YDHD PDAFSGQDYFPEALGRQTFYDPP+ Sbjct: 361 AKQAGSLLPPKHILNSPTKLMKSEGYGAAYEYDHDAPDAFSGQDYFPEALGRQTFYDPPE 420 Query: 421 RGFEREIRKRLDYWARLRKERGGS 444 RGFEREIRKRLDYWA+LRKERGGS Sbjct: 421 RGFEREIRKRLDYWAKLRKERGGS 444 >ref|YP_576854.1| recombination factor protein RarA [Nitrobacter hamburgensis X14] gb|ABE62394.1| Recombination protein MgsA [Nitrobacter hamburgensis X14] Length = 446 Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/443 (88%), Positives = 421/443 (95%) Query: 1 VSPKQPREAGNLFAAAGMEQDAPHPLPDRLRPRTLADVVGQDHILGPDGALTRMLETRTL 60 ++PK+ RE+ +LFAAAG+E+DAPHPLPDRLRPR L+DVVGQDHILGPDGALTRMLETRT Sbjct: 1 MNPKRRRESKSLFAAAGLERDAPHPLPDRLRPRALSDVVGQDHILGPDGALTRMLETRTF 60 Query: 61 GSLVFWGPPGTGKTTVARLLADATELHFEQISAVFSGVADLKKAFDAARARRETGKGTLL 120 GSLVFWGPPGTGKTTVARLLADAT LHFEQ+SAVFSGVADLKKAFDAARARRE+G GTLL Sbjct: 61 GSLVFWGPPGTGKTTVARLLADATALHFEQLSAVFSGVADLKKAFDAARARRESGTGTLL 120 Query: 121 FVDEVHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVFHSLDTAAI 180 FVDEVHRFN+AQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVF SLD AAI Sbjct: 121 FVDEVHRFNKAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVFRSLDAAAI 180 Query: 181 EKLFANAEKIEGKQLPLDAEARAVLVRMADGDGRASLTLAEEVWRAARKGEVFNAEQLQA 240 EKLF AE++EGK LPLD EAR+VLVRMADGDGRA+LTL EEVWR+AR+GEVF+AEQLQ Sbjct: 181 EKLFVRAEQVEGKPLPLDTEARSVLVRMADGDGRAALTLVEEVWRSAREGEVFDAEQLQG 240 Query: 241 ILQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLFLARRVVRMA 300 +LQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLARMF AGEDPLFLARRVVRMA Sbjct: 241 VLQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLARMFQAGEDPLFLARRVVRMA 300 Query: 301 VEDIGLADPQALAVCNAAKEAYDFLGSPEGELAIAQAVVYLATAPKSNAVYTAFGAAMQT 360 VEDIGLADPQALA+CNAAK+AYDFLGSPEGELAIAQAV+YLATAPKSNA Y AFGAAM+T Sbjct: 301 VEDIGLADPQALAICNAAKDAYDFLGSPEGELAIAQAVIYLATAPKSNAAYKAFGAAMRT 360 Query: 361 AKQGGSLLPPKHILNSPTKLMKSEGYGSGYQYDHDMPDAFSGQDYFPEALGRQTFYDPPD 420 AK+ GSLLPPKHILN+PTKLMKSEGYG GYQYDHD PD FSGQDYFPEALGR+TFYDPPD Sbjct: 361 AKEAGSLLPPKHILNAPTKLMKSEGYGGGYQYDHDTPDGFSGQDYFPEALGRRTFYDPPD 420 Query: 421 RGFEREIRKRLDYWARLRKERGG 443 RGFEREIRKRLDYWA+LR+E+ G Sbjct: 421 RGFEREIRKRLDYWAKLRREKDG 443 >ref|ZP_08630356.1| AAA family ATPase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06735.1| AAA family ATPase [Bradyrhizobiaceae bacterium SG-6C] Length = 443 Score = 811 bits (2096), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/441 (89%), Positives = 420/441 (95%) Query: 1 VSPKQPREAGNLFAAAGMEQDAPHPLPDRLRPRTLADVVGQDHILGPDGALTRMLETRTL 60 ++ K+P+ + LFAAAG+EQDAP PLP++LRPRTL DVVGQDHILGPDGALTRMLETRTL Sbjct: 1 MNAKRPQPSQTLFAAAGLEQDAPRPLPEKLRPRTLRDVVGQDHILGPDGALTRMLETRTL 60 Query: 61 GSLVFWGPPGTGKTTVARLLADATELHFEQISAVFSGVADLKKAFDAARARRETGKGTLL 120 GSL+FWGPPGTGKTTVARLLADATEL FEQISAVFSGVADLKK FDAARARRE GKGTLL Sbjct: 61 GSLIFWGPPGTGKTTVARLLADATELEFEQISAVFSGVADLKKVFDAARARREMGKGTLL 120 Query: 121 FVDEVHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVFHSLDTAAI 180 FVDEVHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVF SLDT A+ Sbjct: 121 FVDEVHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVFQSLDTEAV 180 Query: 181 EKLFANAEKIEGKQLPLDAEARAVLVRMADGDGRASLTLAEEVWRAARKGEVFNAEQLQA 240 EKL+A AE++EG++LPLDAEARAVLVRMADGDGRA+LTLAEEVWRAAR EVFNA QLQ Sbjct: 181 EKLYARAEEVEGRKLPLDAEARAVLVRMADGDGRAALTLAEEVWRAARADEVFNAAQLQD 240 Query: 241 ILQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLFLARRVVRMA 300 ILQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLARM DAGEDPLFLARRVVRMA Sbjct: 241 ILQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLARMLDAGEDPLFLARRVVRMA 300 Query: 301 VEDIGLADPQALAVCNAAKEAYDFLGSPEGELAIAQAVVYLATAPKSNAVYTAFGAAMQT 360 VEDIGLADPQAL +CNAAK+AYDFLGSPEGELAIAQAV+Y+ATAPKSNA Y A+ AAM+T Sbjct: 301 VEDIGLADPQALVICNAAKDAYDFLGSPEGELAIAQAVIYIATAPKSNAGYMAYKAAMRT 360 Query: 361 AKQGGSLLPPKHILNSPTKLMKSEGYGSGYQYDHDMPDAFSGQDYFPEALGRQTFYDPPD 420 AK+GGSLLPPKHILNSPTKLM++EGYGSGYQYDHDMPDAFSGQDYFPEALGRQTFYDPPD Sbjct: 361 AKEGGSLLPPKHILNSPTKLMQAEGYGSGYQYDHDMPDAFSGQDYFPEALGRQTFYDPPD 420 Query: 421 RGFEREIRKRLDYWARLRKER 441 RGFEREIRKRLDYWA+LRK+R Sbjct: 421 RGFEREIRKRLDYWAKLRKDR 441 >ref|YP_570282.1| recombination factor protein RarA [Rhodopseudomonas palustris BisB5] gb|ABE40381.1| Recombination protein MgsA [Rhodopseudomonas palustris BisB5] Length = 443 Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/438 (88%), Positives = 412/438 (94%) Query: 1 VSPKQPREAGNLFAAAGMEQDAPHPLPDRLRPRTLADVVGQDHILGPDGALTRMLETRTL 60 +SPK+P + NLFAAAG+E+DAP PLPDRLRPR L DVVGQDHILGPDGALTRML TRTL Sbjct: 1 MSPKRPTQTSNLFAAAGLERDAPRPLPDRLRPRALGDVVGQDHILGPDGALTRMLATRTL 60 Query: 61 GSLVFWGPPGTGKTTVARLLADATELHFEQISAVFSGVADLKKAFDAARARRETGKGTLL 120 GSLVFWGPPGTGKTTVARLLADATELHFEQISAVFSGVADLKK FDAARARRE G GTLL Sbjct: 61 GSLVFWGPPGTGKTTVARLLADATELHFEQISAVFSGVADLKKVFDAARARREMGTGTLL 120 Query: 121 FVDEVHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVFHSLDTAAI 180 FVDEVHRFN+AQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVF SLD AAI Sbjct: 121 FVDEVHRFNKAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVFQSLDAAAI 180 Query: 181 EKLFANAEKIEGKQLPLDAEARAVLVRMADGDGRASLTLAEEVWRAARKGEVFNAEQLQA 240 E+LFANAE++EG+ LPLDAEARAVLVRMADGDGRASLTLAEEVWR+AR+GE+FNA QLQ Sbjct: 181 EQLFANAERVEGRALPLDAEARAVLVRMADGDGRASLTLAEEVWRSAREGEIFNAAQLQE 240 Query: 241 ILQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLFLARRVVRMA 300 ILQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYL RMFDAGEDPLFLARRVVRMA Sbjct: 241 ILQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLCRMFDAGEDPLFLARRVVRMA 300 Query: 301 VEDIGLADPQALAVCNAAKEAYDFLGSPEGELAIAQAVVYLATAPKSNAVYTAFGAAMQT 360 VEDIGLADPQAL +CNAAK+AYDFLGSPEGELAIAQAV+YLATAPKSNA YTA+ AAM+ Sbjct: 301 VEDIGLADPQALVICNAAKDAYDFLGSPEGELAIAQAVIYLATAPKSNAAYTAYKAAMRA 360 Query: 361 AKQGGSLLPPKHILNSPTKLMKSEGYGSGYQYDHDMPDAFSGQDYFPEALGRQTFYDPPD 420 AKQGGSLLPPKHILN+PT LMKSEGYG GYQYDHD P+ FSGQ+YFP+ALG Q FYDPPD Sbjct: 361 AKQGGSLLPPKHILNAPTGLMKSEGYGGGYQYDHDTPEGFSGQEYFPDALGHQIFYDPPD 420 Query: 421 RGFEREIRKRLDYWARLR 438 RGFEREIRKRLDYWA+LR Sbjct: 421 RGFEREIRKRLDYWAKLR 438 >ref|YP_782466.1| recombination factor protein RarA [Rhodopseudomonas palustris BisA53] gb|ABJ07486.1| Recombination protein MgsA [Rhodopseudomonas palustris BisA53] Length = 442 Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/438 (88%), Positives = 416/438 (94%) Query: 1 VSPKQPREAGNLFAAAGMEQDAPHPLPDRLRPRTLADVVGQDHILGPDGALTRMLETRTL 60 ++PK+P + NLFAAAG+E +APHPLPDRLRPR L+DVVGQDHILGPDGALTRMLETR+L Sbjct: 1 MTPKRPPSSQNLFAAAGLEAEAPHPLPDRLRPRALSDVVGQDHILGPDGALTRMLETRSL 60 Query: 61 GSLVFWGPPGTGKTTVARLLADATELHFEQISAVFSGVADLKKAFDAARARRETGKGTLL 120 GSLVFWGPPGTGKTTVARLLADATELHFEQISAVFSGVADLKK FDAARARRE G+GTLL Sbjct: 61 GSLVFWGPPGTGKTTVARLLADATELHFEQISAVFSGVADLKKVFDAARARREMGRGTLL 120 Query: 121 FVDEVHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVFHSLDTAAI 180 FVDEVHRFN+AQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVF SLD AAI Sbjct: 121 FVDEVHRFNKAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVFSSLDPAAI 180 Query: 181 EKLFANAEKIEGKQLPLDAEARAVLVRMADGDGRASLTLAEEVWRAARKGEVFNAEQLQA 240 EKL+ NAE +EGK+LPLDAEARAVLVRMADGDGRA+LTLAEEVWRAARKGEVF+A QLQ Sbjct: 181 EKLYENAEAVEGKKLPLDAEARAVLVRMADGDGRAALTLAEEVWRAARKGEVFDAAQLQD 240 Query: 241 ILQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLFLARRVVRMA 300 ILQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYL RMFDAGEDPLFLARRVVRMA Sbjct: 241 ILQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLCRMFDAGEDPLFLARRVVRMA 300 Query: 301 VEDIGLADPQALAVCNAAKEAYDFLGSPEGELAIAQAVVYLATAPKSNAVYTAFGAAMQT 360 VEDIGLADPQAL +CNAAK+AYDFLGSPEGELAIAQAV+YLATAPKSNA Y A+GAAM+ Sbjct: 301 VEDIGLADPQALVICNAAKDAYDFLGSPEGELAIAQAVIYLATAPKSNAAYKAYGAAMRA 360 Query: 361 AKQGGSLLPPKHILNSPTKLMKSEGYGSGYQYDHDMPDAFSGQDYFPEALGRQTFYDPPD 420 AK+GGSLLPPKHILN+PTKLMKSE YG+GYQYDHD P+AFSGQ+YFP+ALGR FYDPPD Sbjct: 361 AKEGGSLLPPKHILNAPTKLMKSENYGAGYQYDHDTPEAFSGQNYFPDALGRPQFYDPPD 420 Query: 421 RGFEREIRKRLDYWARLR 438 RGFEREIRKRLDYWA+LR Sbjct: 421 RGFEREIRKRLDYWAKLR 438