BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0247.0044.p         (64 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_570283.1| peptidase S1C, Do [Rhodopseudomonas palustris B...   104   4e-21
ref|YP_533276.1| peptidase S1C, Do [Rhodopseudomonas palustris B...   102   2e-20
ref|YP_004108538.1| protease Do [Rhodopseudomonas palustris DX-1...   100   1e-19
ref|NP_772008.1| serine protease [Bradyrhizobium japonicum USDA ...    99   2e-19
ref|YP_001240945.1| serine protease [Bradyrhizobium sp. BTAi1] >...    99   3e-19

>ref|YP_570283.1| peptidase S1C, Do [Rhodopseudomonas palustris BisB5]
 gb|ABE40382.1| Peptidase S1C, Do [Rhodopseudomonas palustris BisB5]
          Length = 464

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/64 (76%), Positives = 57/64 (89%)

Query: 1   VVTELADDGTAANVGFQKGDIIIAVNNEKIARTGDLEKASKTGSRVWRITLVRGGQQINV 60
           VVTELADD TAANVGFQKGDII+AVNN++I +T DLE+ +   +R+WRITLVRGGQQINV
Sbjct: 401 VVTELADDATAANVGFQKGDIIVAVNNKRIGKTSDLERITNESARLWRITLVRGGQQINV 460

Query: 61  TLGG 64
           TLGG
Sbjct: 461 TLGG 464


>ref|YP_533276.1| peptidase S1C, Do [Rhodopseudomonas palustris BisB18]
 gb|ABD88957.1| Peptidase S1C, Do [Rhodopseudomonas palustris BisB18]
          Length = 467

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/64 (76%), Positives = 56/64 (87%)

Query: 1   VVTELADDGTAANVGFQKGDIIIAVNNEKIARTGDLEKASKTGSRVWRITLVRGGQQINV 60
           VV +LADD TAA VGFQKGDIIIAVNN++IART DLE+ +   SR+WRIT+VRGGQQINV
Sbjct: 404 VVIDLADDATAAGVGFQKGDIIIAVNNKRIARTADLERIAAEPSRLWRITVVRGGQQINV 463

Query: 61  TLGG 64
           TLGG
Sbjct: 464 TLGG 467


>ref|YP_004108538.1| protease Do [Rhodopseudomonas palustris DX-1]
 gb|ADU43805.1| protease Do [Rhodopseudomonas palustris DX-1]
          Length = 463

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 54/64 (84%)

Query: 1   VVTELADDGTAANVGFQKGDIIIAVNNEKIARTGDLEKASKTGSRVWRITLVRGGQQINV 60
           VVTELA D TAANVGFQKGDII+AVNN +IA+TGDLE+ +    R+WRI LVRGGQQI V
Sbjct: 400 VVTELAGDSTAANVGFQKGDIIVAVNNTRIAKTGDLERVAGQSPRLWRIMLVRGGQQIQV 459

Query: 61  TLGG 64
           TLGG
Sbjct: 460 TLGG 463


>ref|NP_772008.1| serine protease [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50633.1| serine protease [Bradyrhizobium japonicum USDA 110]
          Length = 423

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/64 (73%), Positives = 55/64 (85%)

Query: 1   VVTELADDGTAANVGFQKGDIIIAVNNEKIARTGDLEKASKTGSRVWRITLVRGGQQINV 60
           V+ +L  D  AANVGFQKGDII+AVNN+KI++TGDLEKA+    R+WRITLVRGGQQINV
Sbjct: 360 VIADLGGDSAAANVGFQKGDIILAVNNQKISKTGDLEKAAGERPRIWRITLVRGGQQINV 419

Query: 61  TLGG 64
           TLGG
Sbjct: 420 TLGG 423


>ref|YP_001240945.1| serine protease [Bradyrhizobium sp. BTAi1]
 gb|ABQ37039.1| putative serine protease containing two PDZ domains [Bradyrhizobium
           sp. BTAi1]
          Length = 464

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/64 (71%), Positives = 56/64 (87%)

Query: 1   VVTELADDGTAANVGFQKGDIIIAVNNEKIARTGDLEKASKTGSRVWRITLVRGGQQINV 60
           VV E  D  TAANVGFQKGD+I+AVNN+KIA+T DL+KAS+  +R+WRIT++RGGQQINV
Sbjct: 401 VVLEPGDGTTAANVGFQKGDVIMAVNNQKIAKTADLDKASRESARIWRITVLRGGQQINV 460

Query: 61  TLGG 64
           TLGG
Sbjct: 461 TLGG 464