BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0042.p (532 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001208033.1| putative polyphosphate-selective porin O [Br... 796 0.0 ref|NP_772009.1| hypothetical protein blr5369 [Bradyrhizobium ja... 768 0.0 ref|ZP_01046088.1| hypothetical protein NB311A_00930 [Nitrobacte... 342 1e-91 ref|ZP_08869800.1| porin O precursor [Azospirillum amazonense Y2... 240 6e-61 ref|YP_744271.1| porin O [Granulibacter bethesdensis CGDNIH1] >g... 234 2e-59 >ref|YP_001208033.1| putative polyphosphate-selective porin O [Bradyrhizobium sp. ORS 278] emb|CAL79818.1| Putative polyphosphate-selective porin O [Bradyrhizobium sp. ORS 278] Length = 520 Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/521 (75%), Positives = 443/521 (85%), Gaps = 2/521 (0%) Query: 13 LAGALAASPAYSQSAGGGSDAEIALLKQQLKMLEQKLDRLQKQTNANTATAASANANAKA 72 + G L S A +QS G GSDAEIALLKQQL+++EQKLDRLQ+QT+AN AASA+A A Sbjct: 1 MIGTLTTSSAQAQS-GNGSDAEIALLKQQLRLMEQKLDRLQRQTSANAQAAASASAKADT 59 Query: 73 ADAK-AARVASANAAIPVKGPVAPSGVVVTMPNNRPTICTADEQNCVAITSRVHWDVGGY 131 A A+ VA+ANAAIPVKG VAPSGVVVTMPNNRPTICTADEQNC+++TSRVHWDVGGY Sbjct: 60 AKAEIKTAVANANAAIPVKGAVAPSGVVVTMPNNRPTICTADEQNCISLTSRVHWDVGGY 119 Query: 132 DYRPNTAGTSPQKLDSGENVRRARIGIVGKFFGDWNYSLIYDFGGSSDGFGGAAPGSLPG 191 D+RPN+A T+PQ+LD+GENVRRARIG++GKF GDWNY+L+YDFGG+SDGFGG A GSLPG Sbjct: 120 DFRPNSAATAPQRLDNGENVRRARIGVLGKFLGDWNYALVYDFGGTSDGFGGTAAGSLPG 179 Query: 192 GGTSGIENAYLSYTGFKPFGGKMAIEGGIMDVPWTLDEATSSNDILFMERASVGIIAQNI 251 GG SGIENAYLSYTG +PFGGKMAIEGGIMDVPWTL EATSSNDILFMERAS +IA NI Sbjct: 180 GGVSGIENAYLSYTGIRPFGGKMAIEGGIMDVPWTLAEATSSNDILFMERASSNVIATNI 239 Query: 252 AAGDFRSAAGTRWWNDQFWIGGYVTGPTSGAIHSASSTSPAGTSEQYGGVIRVAGNPISG 311 AAGDFRSA G+RWWND FW G YVTGPT+G IHS SS +P G++EQYG V R AG +SG Sbjct: 240 AAGDFRSAIGSRWWNDTFWAGAYVTGPTTGQIHSYSSVTPNGSTEQYGVVARAAGQLVSG 299 Query: 312 KNYSVHIGADAEWLVQPPRNQLTQAQTLTLSDRPELRIDPTTLISTGAIANVSGAQVYGV 371 +YS+H+G + E L+QP RN +T AQTLTLSDRPELRIDPTTLISTGAIANVS AQVYG+ Sbjct: 300 SDYSLHLGGNFEDLIQPARNTVTGAQTLTLSDRPELRIDPTTLISTGAIANVSNAQVYGI 359 Query: 372 EAAATYGPFIAQGEYYWFNVDRSANTGLPPFGAPSLKFDGGYAQVGYVLTGENHAYNPAT 431 EAAATYG F QGEYYW+NV+R ANTGLPPFGA +LK DGGYA+ YVLTGE H YNPAT Sbjct: 360 EAAATYGSFFFQGEYYWYNVERGANTGLPPFGARNLKLDGGYAEASYVLTGERHKYNPAT 419 Query: 432 ASYSGIKPHDPFSLAGGGWGAWEIAGRVSTMDLNDQIAQAVGIAGGRQTVYTAALNWYVN 491 ASYSGI P PF+ G WGAWEIAGR ST+DLNDQ+A A GIAGGRQ +YTA LNWYV+ Sbjct: 420 ASYSGITPARPFAWQSGDWGAWEIAGRFSTVDLNDQLATAAGIAGGRQNIYTAGLNWYVS 479 Query: 492 NNVRFMLNYLHGDIAKQASATSTADVGSKFDAVALRTQVAF 532 N+RFMLNYLHGDIA+QASATST + GSKFDAV RTQVAF Sbjct: 480 GNIRFMLNYLHGDIARQASATSTVNTGSKFDAVGFRTQVAF 520 >ref|NP_772009.1| hypothetical protein blr5369 [Bradyrhizobium japonicum USDA 110] dbj|BAC50634.1| blr5369 [Bradyrhizobium japonicum USDA 110] Length = 611 Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/541 (75%), Positives = 445/541 (82%), Gaps = 13/541 (2%) Query: 4 TKVGAIAIGLAGALAASPAYSQSAGGGSDAEIALLKQQLKMLEQKLDRLQKQTNANTATA 63 T++ A AIGLAG LAAS + S+ EIALLKQQLKMLEQKLD+LQ QT ANTA Sbjct: 72 TRIAATAIGLAGVLAAS-QAQAQSASNSEQEIALLKQQLKMLEQKLDKLQSQTAANTAAT 130 Query: 64 ASANANAKAADAKAAR------VASANAAIPVKGPVAPSGVVVTMPNNRPTICTADEQNC 117 A A A AKA AR VA+ANAAIP+KGP SGVVVTMPNNRPTICTAD NC Sbjct: 131 AKAKAEAKAEAKAEARSEAKAVVANANAAIPLKGPAPASGVVVTMPNNRPTICTADGANC 190 Query: 118 VAITSRVHWDVGGYDYRPNTAGTSPQKLDSGENVRRARIGIVGKFFGDWNYSLIYDFGGS 177 VAITSRVHWDVGGYDYRPNTAGT PQKLDSGENVRRARIG+VGKF DWN++LIYDFGGS Sbjct: 191 VAITSRVHWDVGGYDYRPNTAGTVPQKLDSGENVRRARIGVVGKFLEDWNFALIYDFGGS 250 Query: 178 SDGFGGAAP------GSLPGGGTSGIENAYLSYTGFKPFGGKMAIEGGIMDVPWTLDEAT 231 +DGFGG G LPGGGTSGIENAY+SYTG KPFGGKMAIE GIMD+ WTLDE++ Sbjct: 251 ADGFGGTGAAGATPVGFLPGGGTSGIENAYVSYTGLKPFGGKMAIEAGIMDLAWTLDESS 310 Query: 232 SSNDILFMERASVGIIAQNIAAGDFRSAAGTRWWNDQFWIGGYVTGPTSGAIHSASSTSP 291 SSNDI FMERASVG+IAQNIAAGDFRSA G RW+ND FW G YVTGPT+GAIHSASS SP Sbjct: 311 SSNDIPFMERASVGVIAQNIAAGDFRSAVGARWYNDVFWAGAYVTGPTTGAIHSASSVSP 370 Query: 292 AGTSEQYGGVIRVAGNPISGKNYSVHIGADAEWLVQPPRNQLTQAQTLTLSDRPELRIDP 351 GTSEQYG RVAG +SGK+YS+H+G DA+WL+QPPRN + QTLTLSDRPELRIDP Sbjct: 371 PGTSEQYGATARVAGQLVSGKDYSLHLGGDAQWLIQPPRNLVANTQTLTLSDRPELRIDP 430 Query: 352 TTLISTGAIANVSGAQVYGVEAAATYGPFIAQGEYYWFNVDRSANTGLPPFGAPSLKFDG 411 TTLISTGAIANV+GAQVYGVEAAATYG QGEYYWFN+DR+ANT +P GAPSLKF G Sbjct: 431 TTLISTGAIANVAGAQVYGVEAAATYGSLFLQGEYYWFNIDRNANTSVPLIGAPSLKFQG 490 Query: 412 GYAQVGYVLTGENHAYNPATASYSGIKPHDPFSLAGGGWGAWEIAGRVSTMDLNDQIAQA 471 GYA+ YVLTGE+ YNPA ASY G+KP PFSL GGGWGAWEIAGR STMDLN+Q+A A Sbjct: 491 GYAEAAYVLTGESRKYNPANASYGGVKPDHPFSLDGGGWGAWEIAGRYSTMDLNNQLATA 550 Query: 472 VGIAGGRQTVYTAALNWYVNNNVRFMLNYLHGDIAKQASATSTADVGSKFDAVALRTQVA 531 GIAGGRQTVYT ALNWYVN NVRFML+YLHG ++KQAS STADVGSKFDAVA+RTQ A Sbjct: 551 AGIAGGRQTVYTLALNWYVNGNVRFMLDYLHGTVSKQASPVSTADVGSKFDAVAMRTQFA 610 Query: 532 F 532 F Sbjct: 611 F 611 >ref|ZP_01046088.1| hypothetical protein NB311A_00930 [Nitrobacter sp. Nb-311A] gb|EAQ35892.1| hypothetical protein NB311A_00930 [Nitrobacter sp. Nb-311A] Length = 508 Score = 342 bits (876), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 209/528 (39%), Positives = 287/528 (54%), Gaps = 76/528 (14%) Query: 10 AIGLAGALAASPAYSQSAGGGSDAEIALLKQQLKMLEQKLDRLQKQTNANTATAASANAN 69 AI AGA++ + A Q+ + ++ L++Q+++LE+KL+ ++++T N Sbjct: 52 AIAFAGAVSTAQASGQTV---TPEQVEDLQKQIRVLEKKLESVRQKTFLN---------- 98 Query: 70 AKAADAKAARVASANAAIPVKGPVAPSGVVVTMPNNRPTICTADEQNCVAITSRVHWDVG 129 ASA +P KG AP V+V+M P ICTAD NCV IT R+H+DVG Sbjct: 99 -----------ASA-GYMPTKGTFAPPDVLVSMKGGSPRICTADGFNCVGITGRLHFDVG 146 Query: 130 GYDYRPNTAGTSPQKLDSGENVRRARIGIVGKFFGDWNYSLIYDFGGSSDGFGGAAPGSL 189 GY+Y PN+A T PQ L G N RRARIG+VGKF DW Y+LI +FGGS DG G Sbjct: 147 GYNYTPNSAATVPQDLQDGVNARRARIGLVGKFARDWFYALIGEFGGSQDGSG------- 199 Query: 190 PGGGTSGIENAYLSYTGFKPFGGKMAIEGGIMDVPWTLDEATSSNDILFMERASVGIIAQ 249 I NA++SY GF+ +I+ G M V W+L++ATSSN+I FMER+S ++A Sbjct: 200 ------TINNAFVSYKGFE----HTSIDLGYMKVMWSLEQATSSNNITFMERSSAQVMAA 249 Query: 250 NIAAGDFRSAAGTRWWNDQFWIGGYVTGPTSGAIHSASSTSPAGTSEQYGGVIRVAGNPI 309 ++ AG R+A G ++ +W Y+TGP HS Y V R+ PI Sbjct: 250 DLGAGGQRAAVGVISYDKWWWAAAYLTGPERAYDHSLRVP--------YSAVGRLVFTPI 301 Query: 310 SGKNYSVHIGADAEWLVQ----PPRNQLTQAQTLTLSDRPELRIDPTTLISTGAIANVSG 365 + + G + +L P N + L +R ELRIDPT ++ T IANV Sbjct: 302 NTDVATFLFGGEVLYLADTGGAPGVND------IRLRERIELRIDPTRVLDTHTIANVDD 355 Query: 366 AQVYGVEAAATYGPFIAQGEYYWFNVDRSANTGLPPFGAPSLKFDGGYAQVGYVLTGENH 425 +V E GPF QGEY+ +++ RS G L F GGY Q GY+LTGE Sbjct: 356 VRVLSGEVGGAIGPFHGQGEYFDYSISRS--------GGSDLHFKGGYVQAGYILTGERR 407 Query: 426 AYNPATASYSGIKPHDPFSL-AGGGWGAWEIAGRVSTMDLNDQIAQAVGIAGGRQTVYTA 484 Y A++ G+ P PF GG GAWEIA R S MDLND + + GG+Q Sbjct: 408 TYLQHDAAFGGVHPSHPFFWDMAGGIGAWEIAARYSYMDLNDNL-----VFGGKQENIVV 462 Query: 485 ALNWYVNNNVRFMLNYLHGDIAKQASATSTADVGSKFDAVALRTQVAF 532 LNWY+N+N+R M N++HG +AK A D+G+K+DA A+RTQ AF Sbjct: 463 GLNWYLNDNMRLMFNWVHGTVAKTNLANQ--DLGAKYDAFAMRTQWAF 508 >ref|ZP_08869800.1| porin O precursor [Azospirillum amazonense Y2] gb|EGY00607.1| porin O precursor [Azospirillum amazonense Y2] Length = 536 Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 171/533 (32%), Positives = 258/533 (48%), Gaps = 59/533 (11%) Query: 43 KMLEQKLDRLQKQTNANTATAASANANAKAADAKAARVASANAAIPVKGPV--------- 93 + + Q++ RL+ Q A + + A +A +A+ A A A A V+ Sbjct: 20 ETVPQEVQRLRAQLEAQMKVSQAIQARLEALEAREAADAKAQAETKVQAEQVAAQAATQA 79 Query: 94 -------APSGV--VVTMPNNRPTICTADEQNCVAITSRVHWDVGGYDYRPNTAGTSPQK 144 A SG TM RPT + + I + +D Y + S Sbjct: 80 KTIAKLEASSGDNGSFTMAGGRPTFTAFGGKGTLQIGLQAQFDAAAYFEDNASVKRSGVD 139 Query: 145 LDSGENVRRARIGIVGKFFGDWNYSLIYDFGGSSDGFGGAAPGSLPGGGTSGIENAYLSY 204 L G N RR RI V ++ GD ++ DFGGS DG T + A L+Y Sbjct: 140 LGDGVNARRIRIPFVFRY-GDVTATVTPDFGGSPDG----------RQNTQYLYEANLAY 188 Query: 205 TGFKPFGGKMAIEGGIMDVPWTLDEATSSNDILFMERASVGIIAQNIAAGDFRSAAGTRW 264 FK F + G + +L +A SSND +FMER ++ + +NIAAGD R+A G R+ Sbjct: 189 MPFKGFTAAL----GYLQPNISLQDAPSSNDFMFMERPAIMDVERNIAAGDARAAVGARY 244 Query: 265 WNDQFWIGGYVTGP---------------TSGAIHSASSTSPAGTSEQYGGVIRVAGNPI 309 + D+F++ G++TG +G++ +A ST+ +Q G V+RVAG P+ Sbjct: 245 YQDRFFVSGFLTGQAYGGQSTTTATSSVGATGSVTTAISTTQPSNGQQTGAVMRVAGRPV 304 Query: 310 SGKNYSVHIGADAEWLVQPPRNQLTQ-AQTLTLSDRPELRIDPTTLISTGAIANVSGAQV 368 G++Y VH+G + +N + AQ L LS +PELR+D + LI+TG++ +G Sbjct: 305 YGEDYDVHLGFSGSKVFSMNQNDSNRLAQNLALSVQPELRVDTSKLINTGSMP-ATGVYT 363 Query: 369 YGVEAAATYGPFIAQGEYYWFNVDRSANTGLPPFGA---PSLKFDGGYAQVGYVLTGENH 425 + E Y F+ Q EY ++R G GA P L F G Y +VLTGE Sbjct: 364 WNPEVGLRYQNFLVQAEYVEIGINRQHQAGAGLGGATQTPDLTFHGAYVDASWVLTGEPR 423 Query: 426 AYNPATASYSGIKPHDPFSLAGGGWGAWEIAGRVSTMDLNDQI----AQAV--GIAGGRQ 479 Y A + G+K PF+ WGA+E+A R S ++LN + AQ+V G+AGG+Q Sbjct: 424 LYQSARGGFGGLKVAHPFNPETDDWGAFEVAARYSDINLNSHVQRFLAQSVTGGVAGGQQ 483 Query: 480 TVYTAALNWYVNNNVRFMLNYLHGDIAKQASATSTADVGSKFDAVALRTQVAF 532 V LNWY N++++FM +Y D++K + AT G ++ AV R QVA+ Sbjct: 484 DVIQLGLNWYPNDHLKFMADYQIVDVSKLSGATLQNQAGLRYQAVGFRAQVAY 536 >ref|YP_744271.1| porin O [Granulibacter bethesdensis CGDNIH1] gb|ABI61348.1| porin O precursor [Granulibacter bethesdensis CGDNIH1] Length = 553 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 174/527 (33%), Positives = 259/527 (49%), Gaps = 58/527 (11%) Query: 33 AEIALLKQQLKMLEQKLD----RLQKQTNANTATAASANANAKAADAKAARVASANAAIP 88 AE+ ++ Q+ + QK++ R A A A+ A A + A + +P Sbjct: 58 AELRHMRTQVAIHAQKVEVAHQRAIAAATQAHAEAQKAHQEALVVHHDAEHITDAFSRLP 117 Query: 89 -------VKGPV-------APSGVVVTMPNNRPTICTADEQNCVAITSRVHWDVGGYDYR 134 + GP AP GV V RPT+ D + A+ +H+D+GGY Sbjct: 118 PPPQGSPIGGPAFTQVEKGAP-GVRVGFERGRPTLSAIDGRYAFAVGLALHYDMGGYIMP 176 Query: 135 PNTAGTSP--QKLDS-GENVRRARIGIVGKFFGDWNYSLIYDFGGSSDGFGGAAPGSLPG 191 GT P +L S G N+RR RI + ++ G+ ++ +FG S DG Sbjct: 177 DPAPGTRPAVTRLTSFGTNLRRGRIPFMFRY-GNVTANITPEFGSSVDG----------- 224 Query: 192 GGTSGIENAYLSYTGFKPFGGKMAIEGGIMDVPWTLDEATSSNDILFMERASVGIIAQNI 251 +G+ A L+Y+G +PF + G TL+++TSSN+ LF+ER S+ IA+NI Sbjct: 225 --AAGLYEANLNYSGIQPFVFTL----GYFQPRVTLEDSTSSNEFLFLERPSIVDIARNI 278 Query: 252 AAGDFRSAAGTRWWNDQFWIGGYVTGPTSGAIHSASSTSPAGTSEQYGGVIRVAGNPISG 311 AAGD R+ AG + +++ Y TG + G S + + Q GGV+RVA PI+ Sbjct: 279 AAGDARATAGGKANGKRWYAALYGTGSSYG-----SQMTETLSGNQTGGVVRVATRPIAA 333 Query: 312 KNYSVHIGADAEWLVQPPRNQLTQAQTLTLSDRPELRIDPTTLISTGAIANVSGAQVYGV 371 K+ +H+G A + + TL L DRPE+RI LI TG+++ S + YG Sbjct: 334 KDVDMHVGFSASKAFN--LDDVNGNTTLRLRDRPEVRIANIRLIDTGSLSATSAYE-YGP 390 Query: 372 EAAATYGPFIAQGEYYWFNVDRSANTGLPPFGAPSLKFDGGYAQVGYVLTGENHAYNPAT 431 E Y + QGE+ VD+ + LP PSL F GGYA + YVLTGE Y+P+ Sbjct: 391 EFGFRYKNLLIQGEWIAIGVDQKPSGTLP---RPSLGFGGGYASISYVLTGEVRQYDPSA 447 Query: 432 ASYSGIKPHDPFSLAGGGWGAWEIAGRVSTMDLNDQIAQAV------GIAGGRQTVYTAA 485 A++ G P F + G WGA+E+ R S DLN + + G GGRQ V+ A Sbjct: 448 AAFRGPSPVHNFDPSHGHWGAFELVARYSIADLNSNVTPGIAASVTGGTYGGRQAVFAAG 507 Query: 486 LNWYVNNNVRFMLNYLHGDIAKQASATSTADVGSKFDAVALRTQVAF 532 +NWY+N + RFML+Y + D+ + SA +G ++ R Q AF Sbjct: 508 VNWYLNRHFRFMLDYNYIDVDRMNSA-GKVQIGQTLHSIVGRAQAAF 553