BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0247.0041.p         (126 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772010.1| transcriptional regulator [Bradyrhizobium japon...   225   2e-57
ref|YP_001206586.1| MarR family transcriptional regulator [Brady...   215   2e-54
ref|YP_001240946.1| putative transcriptional regulator [Bradyrhi...   211   4e-53
ref|YP_001992613.1| HxlR family transcriptional regulator [Rhodo...   178   3e-43
ref|NP_948561.1| MarR family transcriptional regulator [Rhodopse...   177   4e-43

>ref|NP_772010.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50635.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 128

 Score =  225 bits (574), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 111/128 (86%), Positives = 117/128 (91%), Gaps = 2/128 (1%)

Query: 1   MKRKNFARRPGCAVEAALDLIDGKWKGVILYHLQAGTQRFGELRKRMPGITQRMLTKQLR 60
           MKR++F RRPGC+VEA LDLIDGKWKGVILYHLQ GTQRFGELR+RMPGITQRMLTKQLR
Sbjct: 1   MKRRDFTRRPGCSVEATLDLIDGKWKGVILYHLQDGTQRFGELRRRMPGITQRMLTKQLR 60

Query: 61  ALEDDGLVIRKVYAEVPPRVEYTLSELGESLRPVIDILKAWGEGHQERLSCAPAPEVI-- 118
           ALE+D LVIRKVYAEVPPRVEY LSELGESLRPVIDILKAWGE HQ+RLSCAPAPE    
Sbjct: 61  ALEEDKLVIRKVYAEVPPRVEYCLSELGESLRPVIDILKAWGESHQQRLSCAPAPEAAEP 120

Query: 119 VKKSKRAA 126
           VKK KRAA
Sbjct: 121 VKKPKRAA 128


>ref|YP_001206586.1| MarR family transcriptional regulator [Bradyrhizobium sp. ORS 278]
 emb|CAL78368.1| putative transcriptional regulatory protein, related to MarR family
           [Bradyrhizobium sp. ORS 278]
          Length = 125

 Score =  215 bits (547), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 101/118 (85%), Positives = 108/118 (91%)

Query: 1   MKRKNFARRPGCAVEAALDLIDGKWKGVILYHLQAGTQRFGELRKRMPGITQRMLTKQLR 60
           MKRKNF RRPGCAVEA LDLIDGKWKGVILYHLQ GTQRFG LR+ MPGITQRMLTKQLR
Sbjct: 1   MKRKNFTRRPGCAVEATLDLIDGKWKGVILYHLQGGTQRFGGLRRLMPGITQRMLTKQLR 60

Query: 61  ALEDDGLVIRKVYAEVPPRVEYTLSELGESLRPVIDILKAWGEGHQERLSCAPAPEVI 118
           ALEDDGLV+RKVYAEVPPRV+YTLSE+GESLRPVI++L+ WGE HQERLSCAP  E I
Sbjct: 61  ALEDDGLVVRKVYAEVPPRVDYTLSEVGESLRPVIEVLRTWGERHQERLSCAPVAETI 118


>ref|YP_001240946.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gb|ABQ37040.1| putative transcriptional regulatory protein [Bradyrhizobium sp.
           BTAi1]
          Length = 125

 Score =  211 bits (536), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 97/118 (82%), Positives = 109/118 (92%)

Query: 1   MKRKNFARRPGCAVEAALDLIDGKWKGVILYHLQAGTQRFGELRKRMPGITQRMLTKQLR 60
           MKRKNFARRPGCAVEA LDLIDGKWKGVILYHLQ G+QRFGELR+ MPGITQRMLTKQLR
Sbjct: 1   MKRKNFARRPGCAVEATLDLIDGKWKGVILYHLQGGSQRFGELRRLMPGITQRMLTKQLR 60

Query: 61  ALEDDGLVIRKVYAEVPPRVEYTLSELGESLRPVIDILKAWGEGHQERLSCAPAPEVI 118
           ALE+DGLV+RKVYAEVPPRV+Y+LSE+GESLRPVI++L++WGE H ERLSC P  + I
Sbjct: 61  ALEEDGLVVRKVYAEVPPRVDYSLSEIGESLRPVIEVLRSWGERHHERLSCGPVADTI 118


>ref|YP_001992613.1| HxlR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gb|ACF02138.1| transcriptional regulator, HxlR family [Rhodopseudomonas palustris
           TIE-1]
          Length = 129

 Score =  178 bits (451), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 85/108 (78%), Positives = 92/108 (85%)

Query: 1   MKRKNFARRPGCAVEAALDLIDGKWKGVILYHLQAGTQRFGELRKRMPGITQRMLTKQLR 60
           MKR+NFA  PGC+VE  LDLIDGKWKGVILYHLQ G  RFGELR+RMPGITQRMLTKQLR
Sbjct: 1   MKRRNFACAPGCSVEVTLDLIDGKWKGVILYHLQDGRLRFGELRRRMPGITQRMLTKQLR 60

Query: 61  ALEDDGLVIRKVYAEVPPRVEYTLSELGESLRPVIDILKAWGEGHQER 108
           ALEDD L+ R+V+AEVPPRVEY LSE GE LRPVID LK WGE H+ R
Sbjct: 61  ALEDDDLITREVFAEVPPRVEYALSETGERLRPVIDALKRWGEEHRAR 108


>ref|NP_948561.1| MarR family transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 emb|CAE28663.1| DUF24, predicted transcriptional regulator, related to MarR family
           [Rhodopseudomonas palustris CGA009]
          Length = 158

 Score =  177 bits (450), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 85/108 (78%), Positives = 92/108 (85%)

Query: 1   MKRKNFARRPGCAVEAALDLIDGKWKGVILYHLQAGTQRFGELRKRMPGITQRMLTKQLR 60
           MKR+NFA  PGC+VE  LDLIDGKWKGVILYHLQ G  RFGELR+RMPGITQRMLTKQLR
Sbjct: 30  MKRRNFACAPGCSVEVTLDLIDGKWKGVILYHLQDGRLRFGELRRRMPGITQRMLTKQLR 89

Query: 61  ALEDDGLVIRKVYAEVPPRVEYTLSELGESLRPVIDILKAWGEGHQER 108
           ALEDD L+ R+V+AEVPPRVEY LSE GE LRPVID LK WGE H+ R
Sbjct: 90  ALEDDDLITREVFAEVPPRVEYALSETGERLRPVIDALKRWGEEHRAR 137