BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0034.p (157 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004108533.1| DNA-directed RNA polymerase subunit alpha [R... 325 1e-87 ref|YP_782472.1| DNA-directed RNA polymerase subunit alpha [Rhod... 324 3e-87 ref|YP_533283.1| DNA-directed RNA polymerase subunit alpha [Rhod... 323 6e-87 ref|YP_001205129.1| DNA-directed RNA polymerase subunit alpha [B... 322 8e-87 ref|NP_948565.1| DNA-directed RNA polymerase subunit alpha [Rhod... 322 1e-86 >ref|YP_004108533.1| DNA-directed RNA polymerase subunit alpha [Rhodopseudomonas palustris DX-1] gb|ADU43800.1| DNA-directed RNA polymerase, alpha subunit [Rhodopseudomonas palustris DX-1] Length = 339 Score = 325 bits (834), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 156/157 (99%), Positives = 157/157 (100%) Query: 1 VSYKVENTREGQILDYDKLTMTIETNGAITPEDAVAYAARILQDQLNVFVNFEEPRKEVT 60 VSYKVENTREGQILDYDKLTMT+ETNGAITPEDAVAYAARILQDQLNVFVNFEEPRKEVT Sbjct: 183 VSYKVENTREGQILDYDKLTMTVETNGAITPEDAVAYAARILQDQLNVFVNFEEPRKEVT 242 Query: 61 QEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRKSL 120 QEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRKSL Sbjct: 243 QEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRKSL 302 Query: 121 NEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY 157 NEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY Sbjct: 303 NEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY 339 >ref|YP_782472.1| DNA-directed RNA polymerase subunit alpha [Rhodopseudomonas palustris BisA53] sp|Q07KP2.1|RPOA_RHOP5 RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha gb|ABJ07492.1| DNA-directed RNA polymerase, alpha subunit [Rhodopseudomonas palustris BisA53] Length = 339 Score = 324 bits (831), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 156/157 (99%), Positives = 157/157 (100%) Query: 1 VSYKVENTREGQILDYDKLTMTIETNGAITPEDAVAYAARILQDQLNVFVNFEEPRKEVT 60 VSYKVENTREGQILDYDKLTMTIETNGAITP+DAVAYAARILQDQLNVFVNFEEPRKEVT Sbjct: 183 VSYKVENTREGQILDYDKLTMTIETNGAITPDDAVAYAARILQDQLNVFVNFEEPRKEVT 242 Query: 61 QEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRKSL 120 QEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRKSL Sbjct: 243 QEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRKSL 302 Query: 121 NEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY 157 NEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY Sbjct: 303 NEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY 339 >ref|YP_533283.1| DNA-directed RNA polymerase subunit alpha [Rhodopseudomonas palustris BisB18] sp|Q211H2.1|RPOA_RHOPB RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha gb|ABD88964.1| DNA-directed RNA polymerase, alpha subunit [Rhodopseudomonas palustris BisB18] Length = 339 Score = 323 bits (827), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 155/157 (98%), Positives = 157/157 (100%) Query: 1 VSYKVENTREGQILDYDKLTMTIETNGAITPEDAVAYAARILQDQLNVFVNFEEPRKEVT 60 VSYKVENTREGQILDYDKLTMTIETNGAI+P+DAVAYAARILQDQLNVFVNFEEPRKEVT Sbjct: 183 VSYKVENTREGQILDYDKLTMTIETNGAISPDDAVAYAARILQDQLNVFVNFEEPRKEVT 242 Query: 61 QEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRKSL 120 QEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRKSL Sbjct: 243 QEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRKSL 302 Query: 121 NEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY 157 NEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY Sbjct: 303 NEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY 339 >ref|YP_001205129.1| DNA-directed RNA polymerase subunit alpha [Bradyrhizobium sp. ORS 278] ref|YP_001240953.1| DNA-directed RNA polymerase subunit alpha [Bradyrhizobium sp. BTAi1] sp|A5ELK3.1|RPOA_BRASB RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha sp|A4YSL6.1|RPOA_BRASO RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha emb|CAL76892.1| DNA-directed RNA polymerase alpha chain [Bradyrhizobium sp. ORS 278] gb|ABQ37047.1| DNA-directed RNA polymerase subunit alpha [Bradyrhizobium sp. BTAi1] Length = 343 Score = 322 bits (826), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 155/157 (98%), Positives = 156/157 (99%) Query: 1 VSYKVENTREGQILDYDKLTMTIETNGAITPEDAVAYAARILQDQLNVFVNFEEPRKEVT 60 VSYKVENTREGQILDYDKLTMTIETNGAI+PEDAVAYAARILQDQLNVFVNFEEPRKEV Sbjct: 187 VSYKVENTREGQILDYDKLTMTIETNGAISPEDAVAYAARILQDQLNVFVNFEEPRKEVA 246 Query: 61 QEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRKSL 120 QEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRKSL Sbjct: 247 QEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRKSL 306 Query: 121 NEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY 157 NEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY Sbjct: 307 NEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY 343 >ref|NP_948565.1| DNA-directed RNA polymerase subunit alpha [Rhodopseudomonas palustris CGA009] ref|YP_001992617.1| DNA-directed RNA polymerase subunit alpha [Rhodopseudomonas palustris TIE-1] sp|Q6N4V7.1|RPOA_RHOPA RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha sp|B3QBV5.1|RPOA_RHOPT RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha emb|CAE28667.1| DNA-directed RNA polymerase alpha subunit [Rhodopseudomonas palustris CGA009] gb|ACF02142.1| DNA-directed RNA polymerase, alpha subunit [Rhodopseudomonas palustris TIE-1] Length = 339 Score = 322 bits (825), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 154/157 (98%), Positives = 157/157 (100%) Query: 1 VSYKVENTREGQILDYDKLTMTIETNGAITPEDAVAYAARILQDQLNVFVNFEEPRKEVT 60 VSYKVENTREGQILDYDKLTMT+ETNGAI+PEDAVA+AARILQDQLNVFVNFEEPRKEVT Sbjct: 183 VSYKVENTREGQILDYDKLTMTVETNGAISPEDAVAFAARILQDQLNVFVNFEEPRKEVT 242 Query: 61 QEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRKSL 120 QEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRKSL Sbjct: 243 QEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRKSL 302 Query: 121 NEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY 157 NEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY Sbjct: 303 NEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY 339