BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0033.p (192 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001205129.1| DNA-directed RNA polymerase subunit alpha [B... 343 5e-93 ref|NP_772016.1| DNA-directed RNA polymerase subunit alpha [Brad... 338 2e-91 ref|ZP_01046090.1| DNA-directed RNA polymerase alpha subunit [Ni... 338 3e-91 ref|NP_948565.1| DNA-directed RNA polymerase subunit alpha [Rhod... 336 1e-90 ref|ZP_08630370.1| DNA-directed RNA polymerase alpha subunit [Br... 334 3e-90 >ref|YP_001205129.1| DNA-directed RNA polymerase subunit alpha [Bradyrhizobium sp. ORS 278] ref|YP_001240953.1| DNA-directed RNA polymerase subunit alpha [Bradyrhizobium sp. BTAi1] sp|A5ELK3.1|RPOA_BRASB RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha sp|A4YSL6.1|RPOA_BRASO RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha emb|CAL76892.1| DNA-directed RNA polymerase alpha chain [Bradyrhizobium sp. ORS 278] gb|ABQ37047.1| DNA-directed RNA polymerase subunit alpha [Bradyrhizobium sp. BTAi1] Length = 343 Score = 343 bits (881), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 168/174 (96%), Positives = 171/174 (98%) Query: 1 MGETVTIQKNWQELIRPNKLQVTPGSDASRFATVVAEPLERGFGQTLGNALRRILLSSLQ 60 MGETVTIQKNWQELIRPNKLQVTPGSDA+RFATVVAEPLERGFGQTLGNALRRILLSSLQ Sbjct: 1 MGETVTIQKNWQELIRPNKLQVTPGSDATRFATVVAEPLERGFGQTLGNALRRILLSSLQ 60 Query: 61 GAAVQSVHIDGVLHEFSSIAGVREDVTDIVLNIKDISIKMQGEGPKRMVVKKQGPGAVTA 120 GAAVQSVHIDGVLHEFSSIAGVREDVTDIVLNIKDISIKMQGEGPKRMVVKKQGPGAVTA Sbjct: 61 GAAVQSVHIDGVLHEFSSIAGVREDVTDIVLNIKDISIKMQGEGPKRMVVKKQGPGAVTA 120 Query: 121 GDIQTVGDVTVLNPDLQLCTLDDGAEIRMEFTVTTGKGYVAAERNRPEDAPIGL 174 GDIQTVGD+ VLNPDLQLCTLD+GAEIRMEFTV TGKGYV AERNRPEDAPIGL Sbjct: 121 GDIQTVGDIVVLNPDLQLCTLDEGAEIRMEFTVATGKGYVPAERNRPEDAPIGL 174 >ref|NP_772016.1| DNA-directed RNA polymerase subunit alpha [Bradyrhizobium japonicum USDA 110] sp|Q89JA7.1|RPOA_BRAJA RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha dbj|BAC50641.1| DNA-directed RNA polymerase alpha subunit [Bradyrhizobium japonicum USDA 110] Length = 343 Score = 338 bits (868), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 165/174 (94%), Positives = 169/174 (97%) Query: 1 MGETVTIQKNWQELIRPNKLQVTPGSDASRFATVVAEPLERGFGQTLGNALRRILLSSLQ 60 MGETVTIQKNWQELIRPNKLQVTPGSD +RFAT+VAEPLERGFGQTLGNALRRILLSSLQ Sbjct: 1 MGETVTIQKNWQELIRPNKLQVTPGSDPARFATIVAEPLERGFGQTLGNALRRILLSSLQ 60 Query: 61 GAAVQSVHIDGVLHEFSSIAGVREDVTDIVLNIKDISIKMQGEGPKRMVVKKQGPGAVTA 120 GAAVQSVHIDGVLHEFSSIAGVREDVTDIVLNIKDISIKMQGEGPKRMVVKKQGPG VTA Sbjct: 61 GAAVQSVHIDGVLHEFSSIAGVREDVTDIVLNIKDISIKMQGEGPKRMVVKKQGPGVVTA 120 Query: 121 GDIQTVGDVTVLNPDLQLCTLDDGAEIRMEFTVTTGKGYVAAERNRPEDAPIGL 174 GDIQTVGDV VLNPDLQ+CTLD+GAEIRMEFTV TGKGYV AERNRPEDAPIGL Sbjct: 121 GDIQTVGDVVVLNPDLQICTLDEGAEIRMEFTVATGKGYVPAERNRPEDAPIGL 174 >ref|ZP_01046090.1| DNA-directed RNA polymerase alpha subunit [Nitrobacter sp. Nb-311A] gb|EAQ35894.1| DNA-directed RNA polymerase alpha subunit [Nitrobacter sp. Nb-311A] Length = 343 Score = 338 bits (866), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 163/174 (93%), Positives = 169/174 (97%) Query: 1 MGETVTIQKNWQELIRPNKLQVTPGSDASRFATVVAEPLERGFGQTLGNALRRILLSSLQ 60 MGETVTIQKNWQELIRPNKLQV PGSD SRFAT+VAEPLERGFGQTLGNALRRILLSSLQ Sbjct: 1 MGETVTIQKNWQELIRPNKLQVVPGSDPSRFATLVAEPLERGFGQTLGNALRRILLSSLQ 60 Query: 61 GAAVQSVHIDGVLHEFSSIAGVREDVTDIVLNIKDISIKMQGEGPKRMVVKKQGPGAVTA 120 GAAVQSVHIDGVLHEFSSIAGVREDVTDIVLNIKDI+IKMQGEGPKRMVVKKQGPG+VTA Sbjct: 61 GAAVQSVHIDGVLHEFSSIAGVREDVTDIVLNIKDIAIKMQGEGPKRMVVKKQGPGSVTA 120 Query: 121 GDIQTVGDVTVLNPDLQLCTLDDGAEIRMEFTVTTGKGYVAAERNRPEDAPIGL 174 GDIQTVGD+ VLNPDLQ+CTLDDGAEIRMEFTV GKGY+AAERNRPEDAPIGL Sbjct: 121 GDIQTVGDIVVLNPDLQICTLDDGAEIRMEFTVAAGKGYIAAERNRPEDAPIGL 174 >ref|NP_948565.1| DNA-directed RNA polymerase subunit alpha [Rhodopseudomonas palustris CGA009] ref|YP_001992617.1| DNA-directed RNA polymerase subunit alpha [Rhodopseudomonas palustris TIE-1] sp|Q6N4V7.1|RPOA_RHOPA RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha sp|B3QBV5.1|RPOA_RHOPT RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha emb|CAE28667.1| DNA-directed RNA polymerase alpha subunit [Rhodopseudomonas palustris CGA009] gb|ACF02142.1| DNA-directed RNA polymerase, alpha subunit [Rhodopseudomonas palustris TIE-1] Length = 339 Score = 336 bits (861), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 162/170 (95%), Positives = 168/170 (98%) Query: 5 VTIQKNWQELIRPNKLQVTPGSDASRFATVVAEPLERGFGQTLGNALRRILLSSLQGAAV 64 +TIQKNWQELIRPNKLQVTPGSDA+RFAT+VAEPLERGFGQTLGNALRR+LLSSLQGAAV Sbjct: 1 MTIQKNWQELIRPNKLQVTPGSDATRFATLVAEPLERGFGQTLGNALRRVLLSSLQGAAV 60 Query: 65 QSVHIDGVLHEFSSIAGVREDVTDIVLNIKDISIKMQGEGPKRMVVKKQGPGAVTAGDIQ 124 QSVHIDGVLHEFSSIAGVREDVTDIVLNIKDIS+KMQGEGPKRMVVKKQGPGAVTAGDIQ Sbjct: 61 QSVHIDGVLHEFSSIAGVREDVTDIVLNIKDISLKMQGEGPKRMVVKKQGPGAVTAGDIQ 120 Query: 125 TVGDVTVLNPDLQLCTLDDGAEIRMEFTVTTGKGYVAAERNRPEDAPIGL 174 TVGD+ VLNPDLQLCTLDDGAEIRMEFTV TGKGYVAAERNRPEDAPIGL Sbjct: 121 TVGDIVVLNPDLQLCTLDDGAEIRMEFTVNTGKGYVAAERNRPEDAPIGL 170 >ref|ZP_08630370.1| DNA-directed RNA polymerase alpha subunit [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06749.1| DNA-directed RNA polymerase alpha subunit [Bradyrhizobiaceae bacterium SG-6C] Length = 343 Score = 334 bits (857), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 162/174 (93%), Positives = 167/174 (95%) Query: 1 MGETVTIQKNWQELIRPNKLQVTPGSDASRFATVVAEPLERGFGQTLGNALRRILLSSLQ 60 MGE VTIQKNWQELIRPNKL VTPGSD +RFATV+AEPLERGFGQTLGNALRR+LLSSLQ Sbjct: 1 MGEQVTIQKNWQELIRPNKLNVTPGSDPTRFATVIAEPLERGFGQTLGNALRRVLLSSLQ 60 Query: 61 GAAVQSVHIDGVLHEFSSIAGVREDVTDIVLNIKDISIKMQGEGPKRMVVKKQGPGAVTA 120 GAAVQSVHIDGVLHEFSSIAGVREDVTDIVLN+KDISIKMQGEGPKRMVVKK GPG VTA Sbjct: 61 GAAVQSVHIDGVLHEFSSIAGVREDVTDIVLNVKDISIKMQGEGPKRMVVKKSGPGVVTA 120 Query: 121 GDIQTVGDVTVLNPDLQLCTLDDGAEIRMEFTVTTGKGYVAAERNRPEDAPIGL 174 GDIQTVGDV VLNPDLQLCTLD+GAEIRMEFTV TGKGYVAAERNRPEDAPIGL Sbjct: 121 GDIQTVGDVVVLNPDLQLCTLDEGAEIRMEFTVNTGKGYVAAERNRPEDAPIGL 174