BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0247.0032.p         (129 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_533284.1| 30S ribosomal protein S11 [Rhodopseudomonas pal...   263   8e-69
ref|NP_772017.1| 30S ribosomal protein S11 [Bradyrhizobium japon...   262   1e-68
ref|YP_001240954.1| 30S ribosomal protein S11 [Bradyrhizobium sp...   260   5e-68
ref|YP_782473.1| 30S ribosomal protein S11 [Rhodopseudomonas pal...   260   5e-68
ref|ZP_08630371.1| SSU ribosomal protein S11p [Bradyrhizobiaceae...   259   8e-68

>ref|YP_533284.1| 30S ribosomal protein S11 [Rhodopseudomonas palustris BisB18]
 sp|Q211H1.1|RS11_RHOPB RecName: Full=30S ribosomal protein S11
 gb|ABD88965.1| SSU ribosomal protein S11P [Rhodopseudomonas palustris BisB18]
          Length = 129

 Score =  263 bits (671), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 129/129 (100%), Positives = 129/129 (100%)

Query: 1   MGKEATRVRRRERKNIASGIAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSRKSTP 60
           MGKEATRVRRRERKNIASGIAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSRKSTP
Sbjct: 1   MGKEATRVRRRERKNIASGIAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSRKSTP 60

Query: 61  YAAQVAAEDVSKKAQEHGMRTLEVEVAGPGSGRESALRALQAAGFTVTSIRDVTTIPHNG 120
           YAAQVAAEDVSKKAQEHGMRTLEVEVAGPGSGRESALRALQAAGFTVTSIRDVTTIPHNG
Sbjct: 61  YAAQVAAEDVSKKAQEHGMRTLEVEVAGPGSGRESALRALQAAGFTVTSIRDVTTIPHNG 120

Query: 121 CRPRKRRRV 129
           CRPRKRRRV
Sbjct: 121 CRPRKRRRV 129


>ref|NP_772017.1| 30S ribosomal protein S11 [Bradyrhizobium japonicum USDA 110]
 sp|P59370.1|RS11_BRAJA RecName: Full=30S ribosomal protein S11
 dbj|BAC50642.1| 30S ribosomal protein S11 [Bradyrhizobium japonicum USDA 110]
          Length = 129

 Score =  262 bits (670), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 128/129 (99%), Positives = 129/129 (100%)

Query: 1   MGKEATRVRRRERKNIASGIAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSRKSTP 60
           MGKEATRVRRRERKNIASG+AHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSRKSTP
Sbjct: 1   MGKEATRVRRRERKNIASGVAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSRKSTP 60

Query: 61  YAAQVAAEDVSKKAQEHGMRTLEVEVAGPGSGRESALRALQAAGFTVTSIRDVTTIPHNG 120
           YAAQVAAEDVSKKAQEHGMRTLEVEVAGPGSGRESALRALQAAGFTVTSIRDVTTIPHNG
Sbjct: 61  YAAQVAAEDVSKKAQEHGMRTLEVEVAGPGSGRESALRALQAAGFTVTSIRDVTTIPHNG 120

Query: 121 CRPRKRRRV 129
           CRPRKRRRV
Sbjct: 121 CRPRKRRRV 129


>ref|YP_001240954.1| 30S ribosomal protein S11 [Bradyrhizobium sp. BTAi1]
 sp|A5ELK4.1|RS11_BRASB RecName: Full=30S ribosomal protein S11
 gb|ABQ37048.1| SSU ribosomal protein S11P [Bradyrhizobium sp. BTAi1]
          Length = 129

 Score =  260 bits (665), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 127/129 (98%), Positives = 128/129 (99%)

Query: 1   MGKEATRVRRRERKNIASGIAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSRKSTP 60
           M KEATRVRRRERKNIASG+AHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSRKSTP
Sbjct: 1   MAKEATRVRRRERKNIASGVAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSRKSTP 60

Query: 61  YAAQVAAEDVSKKAQEHGMRTLEVEVAGPGSGRESALRALQAAGFTVTSIRDVTTIPHNG 120
           YAAQVAAEDVSKKAQEHGMRTLEVEVAGPGSGRESALRALQAAGFTVTSIRDVTTIPHNG
Sbjct: 61  YAAQVAAEDVSKKAQEHGMRTLEVEVAGPGSGRESALRALQAAGFTVTSIRDVTTIPHNG 120

Query: 121 CRPRKRRRV 129
           CRPRKRRRV
Sbjct: 121 CRPRKRRRV 129


>ref|YP_782473.1| 30S ribosomal protein S11 [Rhodopseudomonas palustris BisA53]
 sp|Q07KP1.1|RS11_RHOP5 RecName: Full=30S ribosomal protein S11
 gb|ABJ07493.1| SSU ribosomal protein S11P [Rhodopseudomonas palustris BisA53]
          Length = 129

 Score =  260 bits (664), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 127/129 (98%), Positives = 128/129 (99%)

Query: 1   MGKEATRVRRRERKNIASGIAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSRKSTP 60
           M KEATR+RRRERKNIASGIAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSRKSTP
Sbjct: 1   MAKEATRIRRRERKNIASGIAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSRKSTP 60

Query: 61  YAAQVAAEDVSKKAQEHGMRTLEVEVAGPGSGRESALRALQAAGFTVTSIRDVTTIPHNG 120
           YAAQVAAEDVSKKAQEHGMRTLEVEVAGPGSGRESALRALQAAGFTVTSIRDVTTIPHNG
Sbjct: 61  YAAQVAAEDVSKKAQEHGMRTLEVEVAGPGSGRESALRALQAAGFTVTSIRDVTTIPHNG 120

Query: 121 CRPRKRRRV 129
           CRPRKRRRV
Sbjct: 121 CRPRKRRRV 129


>ref|ZP_08630371.1| SSU ribosomal protein S11p [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP06750.1| SSU ribosomal protein S11p [Bradyrhizobiaceae bacterium SG-6C]
          Length = 129

 Score =  259 bits (662), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 127/129 (98%), Positives = 128/129 (99%)

Query: 1   MGKEATRVRRRERKNIASGIAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSRKSTP 60
           M K+ATRVRRRERKNIASGIAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSRKSTP
Sbjct: 1   MAKDATRVRRRERKNIASGIAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSRKSTP 60

Query: 61  YAAQVAAEDVSKKAQEHGMRTLEVEVAGPGSGRESALRALQAAGFTVTSIRDVTTIPHNG 120
           YAAQVAAEDVSKKAQEHGMRTLEVEVAGPGSGRESALRALQAAGFTVTSIRDVTTIPHNG
Sbjct: 61  YAAQVAAEDVSKKAQEHGMRTLEVEVAGPGSGRESALRALQAAGFTVTSIRDVTTIPHNG 120

Query: 121 CRPRKRRRV 129
           CRPRKRRRV
Sbjct: 121 CRPRKRRRV 129