BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0247.0031.p         (122 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6N4V5.3|RS13_RHOPA RecName: Full=30S ribosomal protein S13; ...   234   2e-60
ref|YP_002288692.1| ribosomal protein S13p/S18e [Oligotropha car...   234   4e-60
ref|YP_570289.1| 30S ribosomal protein S13 [Rhodopseudomonas pal...   233   6e-60
ref|NP_948567.2| 30S ribosomal protein S13 [Rhodopseudomonas pal...   233   8e-60
ref|YP_317999.1| 30S ribosomal protein S13 [Nitrobacter winograd...   232   1e-59

>sp|Q6N4V5.3|RS13_RHOPA RecName: Full=30S ribosomal protein S13; AltName: Full=RRP-S13
 emb|CAE28669.1| 30S ribosomal protein S13 [Rhodopseudomonas palustris CGA009]
          Length = 128

 Score =  234 bits (598), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 116/122 (95%), Positives = 120/122 (98%)

Query: 1   VARIAGVNIPTNKRVLIALQYIHGIGQKNAADIMEKVKIPVDRRVNQLTDQEVLQIREVI 60
           VARIAGVNIPTNKRVLIALQYIHGIGQKNAADI+EKVKIP+DRRVNQL+D EVLQIREVI
Sbjct: 7   VARIAGVNIPTNKRVLIALQYIHGIGQKNAADILEKVKIPLDRRVNQLSDAEVLQIREVI 66

Query: 61  DRDYLVEGDLRREVGINIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGK 120
           DRDYLVEGDLRRE G+NIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGK
Sbjct: 67  DRDYLVEGDLRRETGMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGK 126

Query: 121 KK 122
           KK
Sbjct: 127 KK 128


>ref|YP_002288692.1| ribosomal protein S13p/S18e [Oligotropha carboxidovorans OM5]
 gb|ACI92827.1| ribosomal protein S13p/S18e [Oligotropha carboxidovorans OM5]
          Length = 125

 Score =  234 bits (596), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 115/122 (94%), Positives = 121/122 (99%)

Query: 1   VARIAGVNIPTNKRVLIALQYIHGIGQKNAADIMEKVKIPVDRRVNQLTDQEVLQIREVI 60
           VARIAGVNIPTNKRV+IALQYIHGIGQKNAADI+EKVKIP+DRRV+QLTDQEVLQIRE+I
Sbjct: 4   VARIAGVNIPTNKRVIIALQYIHGIGQKNAADIVEKVKIPLDRRVSQLTDQEVLQIREII 63

Query: 61  DRDYLVEGDLRREVGINIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGK 120
           DRDYLVEGDLRRE G+NIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGK
Sbjct: 64  DRDYLVEGDLRRETGMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGK 123

Query: 121 KK 122
           KK
Sbjct: 124 KK 125


>ref|YP_570289.1| 30S ribosomal protein S13 [Rhodopseudomonas palustris BisB5]
 sp|Q134V1.1|RS13_RHOPS RecName: Full=30S ribosomal protein S13
 gb|ABE40388.1| SSU ribosomal protein S13P [Rhodopseudomonas palustris BisB5]
          Length = 122

 Score =  233 bits (595), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 116/122 (95%), Positives = 120/122 (98%)

Query: 1   VARIAGVNIPTNKRVLIALQYIHGIGQKNAADIMEKVKIPVDRRVNQLTDQEVLQIREVI 60
           +ARIAGVNIPTNKRVLIALQYIHGIGQKNAADI+EKVKIPVDRRVNQL+D EVLQIREVI
Sbjct: 1   MARIAGVNIPTNKRVLIALQYIHGIGQKNAADIIEKVKIPVDRRVNQLSDAEVLQIREVI 60

Query: 61  DRDYLVEGDLRREVGINIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGK 120
           DRDYLVEGDLRRE G+NIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGK
Sbjct: 61  DRDYLVEGDLRRETGMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGK 120

Query: 121 KK 122
           KK
Sbjct: 121 KK 122


>ref|NP_948567.2| 30S ribosomal protein S13 [Rhodopseudomonas palustris CGA009]
 ref|YP_001992619.1| 30S ribosomal protein S13 [Rhodopseudomonas palustris TIE-1]
 sp|B3QBV7.1|RS13_RHOPT RecName: Full=30S ribosomal protein S13
 gb|ACF02144.1| ribosomal protein S13 [Rhodopseudomonas palustris TIE-1]
          Length = 122

 Score =  233 bits (594), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 115/122 (94%), Positives = 120/122 (98%)

Query: 1   VARIAGVNIPTNKRVLIALQYIHGIGQKNAADIMEKVKIPVDRRVNQLTDQEVLQIREVI 60
           +ARIAGVNIPTNKRVLIALQYIHGIGQKNAADI+EKVKIP+DRRVNQL+D EVLQIREVI
Sbjct: 1   MARIAGVNIPTNKRVLIALQYIHGIGQKNAADILEKVKIPLDRRVNQLSDAEVLQIREVI 60

Query: 61  DRDYLVEGDLRREVGINIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGK 120
           DRDYLVEGDLRRE G+NIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGK
Sbjct: 61  DRDYLVEGDLRRETGMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGK 120

Query: 121 KK 122
           KK
Sbjct: 121 KK 122


>ref|YP_317999.1| 30S ribosomal protein S13 [Nitrobacter winogradskyi Nb-255]
 ref|ZP_01046092.1| 30S ribosomal protein S13 [Nitrobacter sp. Nb-311A]
 sp|Q3SSU4.1|RS13_NITWN RecName: Full=30S ribosomal protein S13
 gb|ABA04647.1| SSU ribosomal protein S13P [Nitrobacter winogradskyi Nb-255]
 gb|EAQ35896.1| 30S ribosomal protein S13 [Nitrobacter sp. Nb-311A]
          Length = 122

 Score =  232 bits (592), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 115/122 (94%), Positives = 121/122 (99%)

Query: 1   VARIAGVNIPTNKRVLIALQYIHGIGQKNAADIMEKVKIPVDRRVNQLTDQEVLQIREVI 60
           +ARIAGVNIPTNKRV+IALQYIHGIGQKNAA+I+EKVKIP DRRV+QLTDQEVLQIREVI
Sbjct: 1   MARIAGVNIPTNKRVVIALQYIHGIGQKNAAEIIEKVKIPADRRVSQLTDQEVLQIREVI 60

Query: 61  DRDYLVEGDLRREVGINIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGK 120
           DRDYLVEGDLRREVGINIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAK+IAGK
Sbjct: 61  DRDYLVEGDLRREVGINIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKSIAGK 120

Query: 121 KK 122
           KK
Sbjct: 121 KK 122