BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0247.0026.p         (191 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_01046098.1| 30S ribosomal protein S5 [Nitrobacter sp. Nb-...   372   e-101
ref|YP_782479.1| 30S ribosomal protein S5 [Rhodopseudomonas palu...   361   2e-98
ref|YP_533290.1| 30S ribosomal protein S5 [Rhodopseudomonas palu...   357   7e-97
ref|YP_001205122.1| 30S ribosomal protein S5 [Bradyrhizobium sp....   356   8e-97
ref|YP_001240960.1| 30S ribosomal protein S5 [Bradyrhizobium sp....   355   2e-96

>ref|ZP_01046098.1| 30S ribosomal protein S5 [Nitrobacter sp. Nb-311A]
 gb|EAQ35902.1| 30S ribosomal protein S5 [Nitrobacter sp. Nb-311A]
          Length = 191

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/191 (98%), Positives = 190/191 (99%)

Query: 1   MAGERERGGRERSREREERDSEFVDKLVHINRVAKVVKGGKRFGFAALVVIGDQKGRVGF 60
           MAGERERGGRERSR+REERDSEFVDKLVHINRVAKVVKGGKRFGFAALVVIGDQKGRVGF
Sbjct: 1   MAGERERGGRERSRDREERDSEFVDKLVHINRVAKVVKGGKRFGFAALVVIGDQKGRVGF 60

Query: 61  GHGKAREVPEAIRKATESAKRNLTRVALREGRTLHHDIAGRHGAGRVYLRAAPAGTGIIA 120
           GHGKAREVPEAIRKATESAKRNLTRVALREGRTLHHDIAGRHGAGRVYLRAAPAGTGIIA
Sbjct: 61  GHGKAREVPEAIRKATESAKRNLTRVALREGRTLHHDIAGRHGAGRVYLRAAPAGTGIIA 120

Query: 121 GGPMRAVFETLGIQDVVAKSIGSSNPYNMVRATFDALKHQDSPRSVAARRNIKVSTLQSR 180
           GGPMRAVFETLGIQDVVAKSIGSSNPYNMVRATFDALKHQDSPRSV+ARRNIKVSTLQSR
Sbjct: 121 GGPMRAVFETLGIQDVVAKSIGSSNPYNMVRATFDALKHQDSPRSVSARRNIKVSTLQSR 180

Query: 181 RVGGDAEVVAE 191
           RVGGDAE VAE
Sbjct: 181 RVGGDAEAVAE 191


>ref|YP_782479.1| 30S ribosomal protein S5 [Rhodopseudomonas palustris BisA53]
 sp|Q07KN5.1|RS5_RHOP5 RecName: Full=30S ribosomal protein S5
 gb|ABJ07499.1| SSU ribosomal protein S5P [Rhodopseudomonas palustris BisA53]
          Length = 190

 Score =  361 bits (927), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 186/191 (97%), Positives = 187/191 (97%), Gaps = 1/191 (0%)

Query: 1   MAGERERGGRERSREREERDSEFVDKLVHINRVAKVVKGGKRFGFAALVVIGDQKGRVGF 60
           MAGERERGGR+R   REERDSEFVDKLVHINRVAKVVKGGKRFGFAALVVIGDQKGRVGF
Sbjct: 1   MAGERERGGRDRG-PREERDSEFVDKLVHINRVAKVVKGGKRFGFAALVVIGDQKGRVGF 59

Query: 61  GHGKAREVPEAIRKATESAKRNLTRVALREGRTLHHDIAGRHGAGRVYLRAAPAGTGIIA 120
           GHGKAREVPEAIRKATESAKRNLTRV LREGRTLHHDIAGRHGAGRVYLRAAPAGTGIIA
Sbjct: 60  GHGKAREVPEAIRKATESAKRNLTRVPLREGRTLHHDIAGRHGAGRVYLRAAPAGTGIIA 119

Query: 121 GGPMRAVFETLGIQDVVAKSIGSSNPYNMVRATFDALKHQDSPRSVAARRNIKVSTLQSR 180
           GGPMRAVFETLGIQDVVAKSIGSSNPYNMVRATFDALKHQDSPRSVAARRNIKVSTLQSR
Sbjct: 120 GGPMRAVFETLGIQDVVAKSIGSSNPYNMVRATFDALKHQDSPRSVAARRNIKVSTLQSR 179

Query: 181 RVGGDAEVVAE 191
           RVGGDAEVVAE
Sbjct: 180 RVGGDAEVVAE 190


>ref|YP_533290.1| 30S ribosomal protein S5 [Rhodopseudomonas palustris BisB18]
 sp|Q211G5.1|RS5_RHOPB RecName: Full=30S ribosomal protein S5
 gb|ABD88971.1| SSU ribosomal protein S5P [Rhodopseudomonas palustris BisB18]
          Length = 190

 Score =  357 bits (915), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 184/191 (96%), Positives = 185/191 (96%), Gaps = 1/191 (0%)

Query: 1   MAGERERGGRERSREREERDSEFVDKLVHINRVAKVVKGGKRFGFAALVVIGDQKGRVGF 60
           MAGERERGG  R   REERDSEFVDKLVHINRVAKVVKGGKRFGFAALVVIGDQKGRVGF
Sbjct: 1   MAGERERGGGHRG-PREERDSEFVDKLVHINRVAKVVKGGKRFGFAALVVIGDQKGRVGF 59

Query: 61  GHGKAREVPEAIRKATESAKRNLTRVALREGRTLHHDIAGRHGAGRVYLRAAPAGTGIIA 120
           GHGKAREVPEAIRKATESAKRNLTRV LREGRTLHHDIAGRHGAGRVYLRAAPAGTGIIA
Sbjct: 60  GHGKAREVPEAIRKATESAKRNLTRVPLREGRTLHHDIAGRHGAGRVYLRAAPAGTGIIA 119

Query: 121 GGPMRAVFETLGIQDVVAKSIGSSNPYNMVRATFDALKHQDSPRSVAARRNIKVSTLQSR 180
           GGPMRAVFETLGIQDVVAKSIGSSNPYNMVRATFDALKHQDSPRSVAARRN+KVSTLQSR
Sbjct: 120 GGPMRAVFETLGIQDVVAKSIGSSNPYNMVRATFDALKHQDSPRSVAARRNLKVSTLQSR 179

Query: 181 RVGGDAEVVAE 191
           RVGGDAEVVAE
Sbjct: 180 RVGGDAEVVAE 190


>ref|YP_001205122.1| 30S ribosomal protein S5 [Bradyrhizobium sp. ORS 278]
 emb|CAL76885.1| 30S ribosomal subunit protein S5 [Bradyrhizobium sp. ORS 278]
          Length = 194

 Score =  356 bits (914), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 181/191 (94%), Positives = 187/191 (97%), Gaps = 1/191 (0%)

Query: 1   MAGERERGGRERSREREERDSEFVDKLVHINRVAKVVKGGKRFGFAALVVIGDQKGRVGF 60
           MAGERERGGR+R +EREERDSEFVDKLVHINRVAKVVKGGKRFGFAALVVIGDQKGRVGF
Sbjct: 5   MAGERERGGRDR-KEREERDSEFVDKLVHINRVAKVVKGGKRFGFAALVVIGDQKGRVGF 63

Query: 61  GHGKAREVPEAIRKATESAKRNLTRVALREGRTLHHDIAGRHGAGRVYLRAAPAGTGIIA 120
           GHGKAREVPEAIRKAT+SAKRNLTRVALREGRTLHHDI GRHGAGRVYLRAAPAGTGIIA
Sbjct: 64  GHGKAREVPEAIRKATDSAKRNLTRVALREGRTLHHDIFGRHGAGRVYLRAAPAGTGIIA 123

Query: 121 GGPMRAVFETLGIQDVVAKSIGSSNPYNMVRATFDALKHQDSPRSVAARRNIKVSTLQSR 180
           GGPMRAVFETLGIQDVVAKSIGSSNPYNMVRATF+ALKHQDSPRSVAARRNIKVSTLQ+R
Sbjct: 124 GGPMRAVFETLGIQDVVAKSIGSSNPYNMVRATFNALKHQDSPRSVAARRNIKVSTLQAR 183

Query: 181 RVGGDAEVVAE 191
           RVGGDAE  A+
Sbjct: 184 RVGGDAEAAAD 194


>ref|YP_001240960.1| 30S ribosomal protein S5 [Bradyrhizobium sp. BTAi1]
 sp|A4YSK9.2|RS5_BRASO RecName: Full=30S ribosomal protein S5
 sp|A5ELL0.1|RS5_BRASB RecName: Full=30S ribosomal protein S5
 gb|ABQ37054.1| SSU ribosomal protein S5P [Bradyrhizobium sp. BTAi1]
          Length = 190

 Score =  355 bits (911), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 181/191 (94%), Positives = 187/191 (97%), Gaps = 1/191 (0%)

Query: 1   MAGERERGGRERSREREERDSEFVDKLVHINRVAKVVKGGKRFGFAALVVIGDQKGRVGF 60
           MAGERERGGR+R +EREERDSEFVDKLVHINRVAKVVKGGKRFGFAALVVIGDQKGRVGF
Sbjct: 1   MAGERERGGRDR-KEREERDSEFVDKLVHINRVAKVVKGGKRFGFAALVVIGDQKGRVGF 59

Query: 61  GHGKAREVPEAIRKATESAKRNLTRVALREGRTLHHDIAGRHGAGRVYLRAAPAGTGIIA 120
           GHGKAREVPEAIRKAT+SAKRNLTRVALREGRTLHHDI GRHGAGRVYLRAAPAGTGIIA
Sbjct: 60  GHGKAREVPEAIRKATDSAKRNLTRVALREGRTLHHDIFGRHGAGRVYLRAAPAGTGIIA 119

Query: 121 GGPMRAVFETLGIQDVVAKSIGSSNPYNMVRATFDALKHQDSPRSVAARRNIKVSTLQSR 180
           GGPMRAVFETLGIQDVVAKSIGSSNPYNMVRATF+ALKHQDSPRSVAARRNIKVSTLQ+R
Sbjct: 120 GGPMRAVFETLGIQDVVAKSIGSSNPYNMVRATFNALKHQDSPRSVAARRNIKVSTLQAR 179

Query: 181 RVGGDAEVVAE 191
           RVGGDAE  A+
Sbjct: 180 RVGGDAEAAAD 190