BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0247.0025.p         (119 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002288686.1| ribosomal protein L18 [Oligotropha carboxido...   213   1e-53
ref|YP_576843.1| 50S ribosomal protein L18 [Nitrobacter hamburge...   211   2e-53
ref|ZP_07028432.1| ribosomal protein L18 [Afipia sp. 1NLS2] >gi|...   210   5e-53
ref|ZP_08630378.1| LSU ribosomal protein L18p [Bradyrhizobiaceae...   209   2e-52
ref|YP_001205121.1| 50S ribosomal protein L18 [Bradyrhizobium sp...   208   2e-52

>ref|YP_002288686.1| ribosomal protein L18 [Oligotropha carboxidovorans OM5]
 ref|YP_004633255.1| 50S ribosomal protein L18 [Oligotropha carboxidovorans OM5]
 sp|B6JEY1.1|RL18_OLICO RecName: Full=50S ribosomal protein L18
 gb|ACI92821.1| ribosomal protein L18 [Oligotropha carboxidovorans OM5]
 gb|AEI03437.1| 50S ribosomal protein L18 [Oligotropha carboxidovorans OM4]
 gb|AEI07014.1| 50S ribosomal protein L18 [Oligotropha carboxidovorans OM5]
          Length = 120

 Score =  213 bits (541), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/117 (89%), Positives = 112/117 (95%)

Query: 3   LKVTNARRKQRVRLALRRSAGGRPRLSVFRSSKHIYAQVIDDQKGETLASASSLEKTMRD 62
           LK+TNARRKQRVR+ALRR+AGGRPRLSVFRSSKHIYAQVIDDQKGETLASASSLEKTMR+
Sbjct: 4   LKITNARRKQRVRIALRRAAGGRPRLSVFRSSKHIYAQVIDDQKGETLASASSLEKTMRE 63

Query: 63  AGKTGADIDAAKAVGKLLAERAAQKGVKEVVFDRGAYIYHGRVKALADAAREGGLSF 119
            GKTGA+IDAAKAVGKLLAERA + GVKEVVFDRG Y+YHGRVKALADAARE GLSF
Sbjct: 64  GGKTGANIDAAKAVGKLLAERAVKNGVKEVVFDRGGYLYHGRVKALADAARESGLSF 120


>ref|YP_576843.1| 50S ribosomal protein L18 [Nitrobacter hamburgensis X14]
 sp|Q1QN14.1|RL18_NITHX RecName: Full=50S ribosomal protein L18
 gb|ABE62383.1| LSU ribosomal protein L18P [Nitrobacter hamburgensis X14]
          Length = 120

 Score =  211 bits (538), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/117 (89%), Positives = 111/117 (94%)

Query: 3   LKVTNARRKQRVRLALRRSAGGRPRLSVFRSSKHIYAQVIDDQKGETLASASSLEKTMRD 62
           LKVTNARRKQRVRL+LRR+A GRPRLSVFRSSKHIYAQVIDD KGETLASASSLEKTMRD
Sbjct: 4   LKVTNARRKQRVRLSLRRTANGRPRLSVFRSSKHIYAQVIDDLKGETLASASSLEKTMRD 63

Query: 63  AGKTGADIDAAKAVGKLLAERAAQKGVKEVVFDRGAYIYHGRVKALADAAREGGLSF 119
           AG TGA+IDAAKAVGKLLAERA + GVKEVVFDRG+Y+YHGRVKALADAARE GLSF
Sbjct: 64  AGNTGANIDAAKAVGKLLAERAVKNGVKEVVFDRGSYLYHGRVKALADAARESGLSF 120


>ref|ZP_07028432.1| ribosomal protein L18 [Afipia sp. 1NLS2]
 gb|EFI50422.1| ribosomal protein L18 [Afipia sp. 1NLS2]
          Length = 120

 Score =  210 bits (535), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 105/117 (89%), Positives = 110/117 (94%)

Query: 3   LKVTNARRKQRVRLALRRSAGGRPRLSVFRSSKHIYAQVIDDQKGETLASASSLEKTMRD 62
           LKVTNARRKQRVR +LRR+AGGRPRLSVFRSSKHIYAQVIDD KGETLASASSLEKTMRD
Sbjct: 4   LKVTNARRKQRVRNSLRRNAGGRPRLSVFRSSKHIYAQVIDDLKGETLASASSLEKTMRD 63

Query: 63  AGKTGADIDAAKAVGKLLAERAAQKGVKEVVFDRGAYIYHGRVKALADAAREGGLSF 119
            GKTGADIDAAKAVGKLLAERA + GVKEV+FDRG Y+YHGRVKALADAARE GLSF
Sbjct: 64  TGKTGADIDAAKAVGKLLAERAVKNGVKEVIFDRGGYLYHGRVKALADAARESGLSF 120


>ref|ZP_08630378.1| LSU ribosomal protein L18p [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP06757.1| LSU ribosomal protein L18p [Bradyrhizobiaceae bacterium SG-6C]
          Length = 120

 Score =  209 bits (531), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/117 (89%), Positives = 108/117 (92%)

Query: 3   LKVTNARRKQRVRLALRRSAGGRPRLSVFRSSKHIYAQVIDDQKGETLASASSLEKTMRD 62
           LKVTNARRKQRVRLALRR+A GRPRLSVFRSSKHIYAQVIDD KGETLASASSLEK MRD
Sbjct: 4   LKVTNARRKQRVRLALRRTANGRPRLSVFRSSKHIYAQVIDDVKGETLASASSLEKAMRD 63

Query: 63  AGKTGADIDAAKAVGKLLAERAAQKGVKEVVFDRGAYIYHGRVKALADAAREGGLSF 119
            GKTGADIDAAKAVGKLLAERA + GVKEVVFDRG Y+YHGRVKAL DAARE GLSF
Sbjct: 64  TGKTGADIDAAKAVGKLLAERAVKNGVKEVVFDRGGYLYHGRVKALGDAARESGLSF 120


>ref|YP_001205121.1| 50S ribosomal protein L18 [Bradyrhizobium sp. ORS 278]
 sp|A4YSK8.1|RL18_BRASO RecName: Full=50S ribosomal protein L18
 emb|CAL76884.1| 50S ribosomal subunit protein L18 [Bradyrhizobium sp. ORS 278]
          Length = 120

 Score =  208 bits (529), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 103/116 (88%), Positives = 109/116 (93%)

Query: 4   KVTNARRKQRVRLALRRSAGGRPRLSVFRSSKHIYAQVIDDQKGETLASASSLEKTMRDA 63
           KVTNARRKQRVRL+LRRSAGGRPRLSVFRSSKHIYAQVIDDQKGET+ASASS+EK MR A
Sbjct: 5   KVTNARRKQRVRLSLRRSAGGRPRLSVFRSSKHIYAQVIDDQKGETIASASSMEKEMRSA 64

Query: 64  GKTGADIDAAKAVGKLLAERAAQKGVKEVVFDRGAYIYHGRVKALADAAREGGLSF 119
           G TGADIDAAKAVGKLLAERA + G+KEVVFDRG Y+YHGRVKALADAARE GLSF
Sbjct: 65  GNTGADIDAAKAVGKLLAERAVKAGIKEVVFDRGGYLYHGRVKALADAARESGLSF 120