BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0024.p (177 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001205120.1| 50S ribosomal protein L6 [Bradyrhizobium sp.... 327 5e-88 ref|YP_001240962.1| 50S ribosomal protein L6 [Bradyrhizobium sp.... 324 4e-87 ref|NP_772025.1| 50S ribosomal protein L6 [Bradyrhizobium japoni... 322 2e-86 ref|YP_576842.1| 50S ribosomal protein L6 [Nitrobacter hamburgen... 317 4e-85 ref|NP_948574.1| 50S ribosomal protein L6 [Rhodopseudomonas palu... 312 1e-83 >ref|YP_001205120.1| 50S ribosomal protein L6 [Bradyrhizobium sp. ORS 278] sp|A4YSK7.1|RL6_BRASO RecName: Full=50S ribosomal protein L6 emb|CAL76883.1| 50S ribosomal subunit protein L6 [Bradyrhizobium sp. ORS 278] Length = 177 Score = 327 bits (837), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 160/177 (90%), Positives = 171/177 (96%) Query: 1 MSRIGKRPVAIPSGVTATVEGQTVKVKGPKGQLQFVVHDDVEVKFENGQVKVAPRVKTNR 60 MSRIGK+PV +PSGVTATV+GQTVK+KGPKGQLQF+VHDDVEVKFENGQVKVAPR +T R Sbjct: 1 MSRIGKKPVTVPSGVTATVDGQTVKMKGPKGQLQFLVHDDVEVKFENGQVKVAPRAETKR 60 Query: 61 AQAMYGTARAQVANLVEGVTKGFERKLEITGVGYRAAMQGKNLQLALGYSHDVVYAIPEG 120 A+++YGTARAQ+ANLVEGVTKGFE+KLEITGVGYRAAMQGKNLQLALGYSHDVVY IPEG Sbjct: 61 ARSLYGTARAQIANLVEGVTKGFEKKLEITGVGYRAAMQGKNLQLALGYSHDVVYQIPEG 120 Query: 121 ITIAVPKPTEITITGNDPQRVGQVAAEIRAYRPPEPYKGKGVKYANEFIFRKEGKKK 177 ITIAVPKPTEITITG DPQRVGQVAAEIRAYRPPEPYKGKGVKYA EFIFRKEGKKK Sbjct: 121 ITIAVPKPTEITITGIDPQRVGQVAAEIRAYRPPEPYKGKGVKYAGEFIFRKEGKKK 177 >ref|YP_001240962.1| 50S ribosomal protein L6 [Bradyrhizobium sp. BTAi1] sp|A5ELL2.1|RL6_BRASB RecName: Full=50S ribosomal protein L6 gb|ABQ37056.1| LSU ribosomal protein L6P [Bradyrhizobium sp. BTAi1] Length = 177 Score = 324 bits (830), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 157/177 (88%), Positives = 171/177 (96%) Query: 1 MSRIGKRPVAIPSGVTATVEGQTVKVKGPKGQLQFVVHDDVEVKFENGQVKVAPRVKTNR 60 MSRIGK+PV +PSGVTATV+GQTVK+KGPKGQLQF+VHDDV+VKFENGQV+VAPR +T R Sbjct: 1 MSRIGKKPVTVPSGVTATVDGQTVKMKGPKGQLQFIVHDDVDVKFENGQVRVAPRSETKR 60 Query: 61 AQAMYGTARAQVANLVEGVTKGFERKLEITGVGYRAAMQGKNLQLALGYSHDVVYAIPEG 120 A+++YGTARAQ+ANLVEGVTKGFE+KLEITGVGYRAAMQGKNLQLALGYSHDVVY IPEG Sbjct: 61 ARSLYGTARAQIANLVEGVTKGFEKKLEITGVGYRAAMQGKNLQLALGYSHDVVYQIPEG 120 Query: 121 ITIAVPKPTEITITGNDPQRVGQVAAEIRAYRPPEPYKGKGVKYANEFIFRKEGKKK 177 ITIAVPKPTEIT+TG DPQRVGQVAAEIRAYRPPEPYKGKGVKYA EFIFRKEGKKK Sbjct: 121 ITIAVPKPTEITVTGIDPQRVGQVAAEIRAYRPPEPYKGKGVKYAGEFIFRKEGKKK 177 >ref|NP_772025.1| 50S ribosomal protein L6 [Bradyrhizobium japonicum USDA 110] sp|Q89J99.1|RL6_BRAJA RecName: Full=50S ribosomal protein L6 dbj|BAC50650.1| 50S ribosomal protein L6 [Bradyrhizobium japonicum USDA 110] Length = 177 Score = 322 bits (825), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 155/177 (87%), Positives = 170/177 (96%) Query: 1 MSRIGKRPVAIPSGVTATVEGQTVKVKGPKGQLQFVVHDDVEVKFENGQVKVAPRVKTNR 60 MSR+GKRPVA+PSGVTATV+GQTVK+KGPKGQLQFVVHDDVEVK E+GQ+KV PR++TNR Sbjct: 1 MSRVGKRPVAVPSGVTATVDGQTVKMKGPKGQLQFVVHDDVEVKLESGQIKVKPRLETNR 60 Query: 61 AQAMYGTARAQVANLVEGVTKGFERKLEITGVGYRAAMQGKNLQLALGYSHDVVYAIPEG 120 A+A+YGTARAQVANLVEGVTKGFE+KLEITGVGYRAAMQGKNLQLALGYSHDV+Y IPEG Sbjct: 61 ARALYGTARAQVANLVEGVTKGFEKKLEITGVGYRAAMQGKNLQLALGYSHDVIYTIPEG 120 Query: 121 ITIAVPKPTEITITGNDPQRVGQVAAEIRAYRPPEPYKGKGVKYANEFIFRKEGKKK 177 ITI VPKPTEIT+TG+D QRVGQVAAEIR+YRPPEPYKGKGVKY EFIFRKEGKKK Sbjct: 121 ITITVPKPTEITVTGSDIQRVGQVAAEIRSYRPPEPYKGKGVKYVGEFIFRKEGKKK 177 >ref|YP_576842.1| 50S ribosomal protein L6 [Nitrobacter hamburgensis X14] sp|Q1QN15.1|RL6_NITHX RecName: Full=50S ribosomal protein L6 gb|ABE62382.1| LSU ribosomal protein L6P [Nitrobacter hamburgensis X14] Length = 177 Score = 317 bits (813), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 156/177 (88%), Positives = 166/177 (93%) Query: 1 MSRIGKRPVAIPSGVTATVEGQTVKVKGPKGQLQFVVHDDVEVKFENGQVKVAPRVKTNR 60 MSRIGKRPV +PSGVTATVEGQTV++KGPKGQL+FVVH+DVEVK ENG VKVAPR +TNR Sbjct: 1 MSRIGKRPVTVPSGVTATVEGQTVRMKGPKGQLEFVVHNDVEVKLENGAVKVAPRYETNR 60 Query: 61 AQAMYGTARAQVANLVEGVTKGFERKLEITGVGYRAAMQGKNLQLALGYSHDVVYAIPEG 120 AQA+YGTARAQVANLV GVTKGFE+KLEI GVGYRAA+QGK LQLALGYSHDV YAIPEG Sbjct: 61 AQALYGTARAQVANLVAGVTKGFEKKLEIVGVGYRAALQGKTLQLALGYSHDVSYAIPEG 120 Query: 121 ITIAVPKPTEITITGNDPQRVGQVAAEIRAYRPPEPYKGKGVKYANEFIFRKEGKKK 177 ITIAVPKPTEITI GND QRVGQVAAEIR YRPPEPYKGKGVKYA+EFIFRKEGKKK Sbjct: 121 ITIAVPKPTEITIAGNDAQRVGQVAAEIRGYRPPEPYKGKGVKYADEFIFRKEGKKK 177 >ref|NP_948574.1| 50S ribosomal protein L6 [Rhodopseudomonas palustris CGA009] ref|YP_001992627.1| 50S ribosomal protein L6 [Rhodopseudomonas palustris TIE-1] sp|Q6N4U8.3|RL6_RHOPA RecName: Full=50S ribosomal protein L6; AltName: Full=RRP-L6 sp|B3QBW5.1|RL6_RHOPT RecName: Full=50S ribosomal protein L6 emb|CAE28676.1| 50S ribosomal protein L6 [Rhodopseudomonas palustris CGA009] gb|ACF02152.1| ribosomal protein L6 [Rhodopseudomonas palustris TIE-1] Length = 177 Score = 312 bits (800), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 151/177 (85%), Positives = 167/177 (94%) Query: 1 MSRIGKRPVAIPSGVTATVEGQTVKVKGPKGQLQFVVHDDVEVKFENGQVKVAPRVKTNR 60 MSR+GK+PV +PSGVTATVEGQTVK+KGPKGQLQFVVHDDV+VKFE+G VKVAPR +TNR Sbjct: 1 MSRVGKKPVTVPSGVTATVEGQTVKMKGPKGQLQFVVHDDVDVKFEDGAVKVAPRHETNR 60 Query: 61 AQAMYGTARAQVANLVEGVTKGFERKLEITGVGYRAAMQGKNLQLALGYSHDVVYAIPEG 120 A+A+YGTARAQ+ANLVEGVTKGFE+KLEITGVGYRAAMQGK LQLALGYSHDV+Y IPEG Sbjct: 61 ARALYGTARAQIANLVEGVTKGFEKKLEITGVGYRAAMQGKKLQLALGYSHDVLYDIPEG 120 Query: 121 ITIAVPKPTEITITGNDPQRVGQVAAEIRAYRPPEPYKGKGVKYANEFIFRKEGKKK 177 ITI VPKPTEI + G DPQ+VGQVAAEIR YRPPEPYKGKGV+YA+EFIFRKEGKKK Sbjct: 121 ITITVPKPTEINVVGIDPQKVGQVAAEIRDYRPPEPYKGKGVRYADEFIFRKEGKKK 177