BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0247.0020.p         (104 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001205116.1| 50S ribosomal protein L24 [Bradyrhizobium sp...   188   3e-46
ref|NP_772029.1| 50S ribosomal protein L24 [Bradyrhizobium japon...   187   3e-46
ref|YP_001240966.1| 50S ribosomal protein L24 [Bradyrhizobium sp...   186   8e-46
ref|NP_948578.1| 50S ribosomal protein L24 [Rhodopseudomonas pal...   186   1e-45
ref|YP_782485.1| 50S ribosomal protein L24 [Rhodopseudomonas pal...   185   2e-45

>ref|YP_001205116.1| 50S ribosomal protein L24 [Bradyrhizobium sp. ORS 278]
 sp|A4YSK3.1|RL24_BRASO RecName: Full=50S ribosomal protein L24
 emb|CAL76879.1| 50S ribosomal subunit protein L24 [Bradyrhizobium sp. ORS 278]
          Length = 104

 Score =  188 bits (477), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 93/104 (89%), Positives = 98/104 (94%)

Query: 1   MAAKIRKGDKVMVLTGRDKGRTGEVFEVRPDENKALVRGINMVKRHQKQTQTQEGGIISK 60
           MAAKIRKGDKV+VLTGRDKGRTGEVFEVRPD   ALVRGIN+VKRHQKQTQ QEGGII+K
Sbjct: 1   MAAKIRKGDKVIVLTGRDKGRTGEVFEVRPDAGTALVRGINLVKRHQKQTQNQEGGIITK 60

Query: 61  EMPIDLSNIAYVGKDGKPTRIGFKIQADGKKVRVAKSSGAEIDG 104
           E PI+LSN+AYVGKDGKPTRIGFKIQADGKKVRVAKSSG EIDG
Sbjct: 61  EAPINLSNVAYVGKDGKPTRIGFKIQADGKKVRVAKSSGVEIDG 104


>ref|NP_772029.1| 50S ribosomal protein L24 [Bradyrhizobium japonicum USDA 110]
 sp|Q89J95.1|RL24_BRAJA RecName: Full=50S ribosomal protein L24
 dbj|BAC50654.1| 50S ribosomal protein L24 [Bradyrhizobium japonicum USDA 110]
          Length = 104

 Score =  187 bits (476), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 94/104 (90%), Positives = 97/104 (93%)

Query: 1   MAAKIRKGDKVMVLTGRDKGRTGEVFEVRPDENKALVRGINMVKRHQKQTQTQEGGIISK 60
           MAAKIRKGDKV+VLTGRDKGRTGEVFEVRPD   ALVRGINMVKRHQKQTQ QEGGIISK
Sbjct: 1   MAAKIRKGDKVVVLTGRDKGRTGEVFEVRPDAGTALVRGINMVKRHQKQTQAQEGGIISK 60

Query: 61  EMPIDLSNIAYVGKDGKPTRIGFKIQADGKKVRVAKSSGAEIDG 104
           E PI LSNIAYVGKDGKPTR+GFKI ADGKKVR+AKSSGAEIDG
Sbjct: 61  EAPIQLSNIAYVGKDGKPTRVGFKILADGKKVRIAKSSGAEIDG 104


>ref|YP_001240966.1| 50S ribosomal protein L24 [Bradyrhizobium sp. BTAi1]
 sp|A5ELL6.1|RL24_BRASB RecName: Full=50S ribosomal protein L24
 gb|ABQ37060.1| LSU ribosomal protein L24P [Bradyrhizobium sp. BTAi1]
          Length = 104

 Score =  186 bits (473), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 92/104 (88%), Positives = 97/104 (93%)

Query: 1   MAAKIRKGDKVMVLTGRDKGRTGEVFEVRPDENKALVRGINMVKRHQKQTQTQEGGIISK 60
           MAAKIRKGDKV+VLTGRDKGRTGEVFEVRPD   ALVRGIN+VKRHQKQTQ QEGGII+K
Sbjct: 1   MAAKIRKGDKVIVLTGRDKGRTGEVFEVRPDAGTALVRGINLVKRHQKQTQNQEGGIITK 60

Query: 61  EMPIDLSNIAYVGKDGKPTRIGFKIQADGKKVRVAKSSGAEIDG 104
           E PI LSN+AYVGKDGKPTRIGFK+QADGKKVRVAKSSG EIDG
Sbjct: 61  EAPIHLSNVAYVGKDGKPTRIGFKVQADGKKVRVAKSSGVEIDG 104


>ref|NP_948578.1| 50S ribosomal protein L24 [Rhodopseudomonas palustris CGA009]
 ref|YP_001992631.1| 50S ribosomal protein L24 [Rhodopseudomonas palustris TIE-1]
 ref|YP_004108520.1| 50S ribosomal protein L24 [Rhodopseudomonas palustris DX-1]
 sp|P60744.3|RL24_RHOPA RecName: Full=50S ribosomal protein L24; AltName: Full=RRP-L24
 sp|B3QBW9.1|RL24_RHOPT RecName: Full=50S ribosomal protein L24
 emb|CAE28680.1| 50S ribosomal protein L24 [Rhodopseudomonas palustris CGA009]
 gb|ACF02156.1| ribosomal protein L24 [Rhodopseudomonas palustris TIE-1]
 gb|ADU43787.1| ribosomal protein L24 [Rhodopseudomonas palustris DX-1]
          Length = 104

 Score =  186 bits (471), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 94/104 (90%), Positives = 98/104 (94%)

Query: 1   MAAKIRKGDKVMVLTGRDKGRTGEVFEVRPDENKALVRGINMVKRHQKQTQTQEGGIISK 60
           MAAKIRKGDKV+VL+GRDKGRTGEVFEVRPD  KALVRGIN+VKRHQKQTQTQEGGIISK
Sbjct: 1   MAAKIRKGDKVIVLSGRDKGRTGEVFEVRPDAGKALVRGINVVKRHQKQTQTQEGGIISK 60

Query: 61  EMPIDLSNIAYVGKDGKPTRIGFKIQADGKKVRVAKSSGAEIDG 104
           E PIDLSNIA VGKDGKPTR+GFKI ADGKKVRVAK SGAEIDG
Sbjct: 61  EAPIDLSNIAIVGKDGKPTRVGFKILADGKKVRVAKRSGAEIDG 104


>ref|YP_782485.1| 50S ribosomal protein L24 [Rhodopseudomonas palustris BisA53]
 sp|Q07KM9.1|RL24_RHOP5 RecName: Full=50S ribosomal protein L24
 gb|ABJ07505.1| LSU ribosomal protein L24P [Rhodopseudomonas palustris BisA53]
          Length = 104

 Score =  185 bits (470), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/103 (90%), Positives = 98/103 (95%)

Query: 1   MAAKIRKGDKVMVLTGRDKGRTGEVFEVRPDENKALVRGINMVKRHQKQTQTQEGGIISK 60
           MAAKIRKGDKV+VLTGRDKGRTGEVFEVRP +NKALVRGIN+VKRHQKQTQ QEGGIISK
Sbjct: 1   MAAKIRKGDKVIVLTGRDKGRTGEVFEVRPADNKALVRGINIVKRHQKQTQAQEGGIISK 60

Query: 61  EMPIDLSNIAYVGKDGKPTRIGFKIQADGKKVRVAKSSGAEID 103
           E PI+LSNIA VGKDGKPTR+GFKIQADGKKVRVAK SGAEID
Sbjct: 61  EAPINLSNIAIVGKDGKPTRVGFKIQADGKKVRVAKRSGAEID 103