BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0247.0015.p         (233 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001240971.1| 30S ribosomal protein S3 [Bradyrhizobium sp....   453   e-126
ref|YP_485917.1| 30S ribosomal protein S3 [Rhodopseudomonas palu...   453   e-125
ref|NP_948583.1| 30S ribosomal protein S3 [Rhodopseudomonas palu...   452   e-125
ref|YP_533301.1| 30S ribosomal protein S3 [Rhodopseudomonas palu...   452   e-125
ref|YP_001205111.1| 30S ribosomal protein S3 [Bradyrhizobium sp....   452   e-125

>ref|YP_001240971.1| 30S ribosomal protein S3 [Bradyrhizobium sp. BTAi1]
 sp|A5ELM1.1|RS3_BRASB RecName: Full=30S ribosomal protein S3
 gb|ABQ37065.1| SSU ribosomal protein S3P [Bradyrhizobium sp. BTAi1]
          Length = 236

 Score =  453 bits (1166), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/236 (95%), Positives = 228/236 (96%), Gaps = 3/236 (1%)

Query: 1   MGQKINPIGLRLGINRTWDSRWFAGKQEYGKLLHEDVKIREILHKELKQAAVARIVIERP 60
           MGQKINPIGLRLGINRTWDSRWFAGK EYGKLLHEDVKIREILHKELKQAAVARIVIERP
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWFAGKAEYGKLLHEDVKIREILHKELKQAAVARIVIERP 60

Query: 61  HKKCRVTIHSARPGVVIGKKGADIDKLRKKVADITSSDVVINIVEIRKPELDATLVAESI 120
           HKKCRVTIHSARPGVVIGKKGADIDKLRK+VADITSSDVVINIVEIRKPELDATLVAESI
Sbjct: 61  HKKCRVTIHSARPGVVIGKKGADIDKLRKRVADITSSDVVINIVEIRKPELDATLVAESI 120

Query: 121 AQQLERRVAFRRAMKRAVQSAMRLGAGGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180
           AQQLERRVAFRRAMKRAVQSAMRLGA GIRINCSGRLGGAEIARMEWYREGRVPLHTLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 DVDYGVATAFTTFGTCGVKVWIFKGEILEHDPMAQDKKMAEG---DSTPRSRRDAA 233
           D+DYGVATAFTTFGTCGVKVWIFKGEILEHDPMAQDK+M EG    S PRSRRDAA
Sbjct: 181 DIDYGVATAFTTFGTCGVKVWIFKGEILEHDPMAQDKRMNEGGGESSQPRSRRDAA 236


>ref|YP_485917.1| 30S ribosomal protein S3 [Rhodopseudomonas palustris HaA2]
 sp|Q2IXQ4.1|RS3_RHOP2 RecName: Full=30S ribosomal protein S3
 gb|ABD07006.1| SSU ribosomal protein S3P [Rhodopseudomonas palustris HaA2]
          Length = 232

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/233 (96%), Positives = 229/233 (98%), Gaps = 1/233 (0%)

Query: 1   MGQKINPIGLRLGINRTWDSRWFAGKQEYGKLLHEDVKIREILHKELKQAAVARIVIERP 60
           MGQKINPIGLRLGINRTWDSRWFAGK EYGKLLHEDVKIREILHKELKQAAVARIVIERP
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWFAGKNEYGKLLHEDVKIREILHKELKQAAVARIVIERP 60

Query: 61  HKKCRVTIHSARPGVVIGKKGADIDKLRKKVADITSSDVVINIVEIRKPELDATLVAESI 120
           HKKCRVTIHSARPGVVIGKKGADIDKLRKKVADIT+SDVVINIVEIRKPELDATLVAESI
Sbjct: 61  HKKCRVTIHSARPGVVIGKKGADIDKLRKKVADITASDVVINIVEIRKPELDATLVAESI 120

Query: 121 AQQLERRVAFRRAMKRAVQSAMRLGAGGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180
           AQQLERRVAFRRAMKRAVQSAMRLGA GIRINCSGRLGGAEIARMEWYREGRVPLHTLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 DVDYGVATAFTTFGTCGVKVWIFKGEILEHDPMAQDKKMAEGDSTPRSRRDAA 233
           D+DYGVATAFTTFGTCGVKVWIFKGEILEHDPMAQDK+MAEGD++ R RRDAA
Sbjct: 181 DIDYGVATAFTTFGTCGVKVWIFKGEILEHDPMAQDKRMAEGDNS-RPRRDAA 232


>ref|NP_948583.1| 30S ribosomal protein S3 [Rhodopseudomonas palustris CGA009]
 ref|YP_004108515.1| 30S ribosomal protein S3 [Rhodopseudomonas palustris DX-1]
 sp|Q6N4U0.3|RS3_RHOPA RecName: Full=30S ribosomal protein S3; AltName: Full=RRP-S3
 emb|CAE28685.1| 30S ribosomal protein S3 [Rhodopseudomonas palustris CGA009]
 gb|ADU43782.1| ribosomal protein S3 [Rhodopseudomonas palustris DX-1]
          Length = 235

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/235 (95%), Positives = 228/235 (97%), Gaps = 2/235 (0%)

Query: 1   MGQKINPIGLRLGINRTWDSRWFAGKQEYGKLLHEDVKIREILHKELKQAAVARIVIERP 60
           MGQKINPIGLRLGINRTWDSRWFAGK EYGKLLHEDVKIREILHKELKQAAVARIVIERP
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWFAGKNEYGKLLHEDVKIREILHKELKQAAVARIVIERP 60

Query: 61  HKKCRVTIHSARPGVVIGKKGADIDKLRKKVADITSSDVVINIVEIRKPELDATLVAESI 120
           HKKCRVTIHSARPGVVIGKKGADIDKLRKKVADITSSDVVINIVEIRKPELDATLVAESI
Sbjct: 61  HKKCRVTIHSARPGVVIGKKGADIDKLRKKVADITSSDVVINIVEIRKPELDATLVAESI 120

Query: 121 AQQLERRVAFRRAMKRAVQSAMRLGAGGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180
           AQQLERRVAFRRAMKRAVQSAMRLGA GIRINCSGRLGGAEIARMEWYREGRVPLHTLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 DVDYGVATAFTTFGTCGVKVWIFKGEILEHDPMAQDKKMAEGD--STPRSRRDAA 233
           D+DYGVATAFTTFGTCGVKVWIFKGEILEHDPMAQDK+MAEGD   + R RRDAA
Sbjct: 181 DIDYGVATAFTTFGTCGVKVWIFKGEILEHDPMAQDKRMAEGDGGGSSRPRRDAA 235


>ref|YP_533301.1| 30S ribosomal protein S3 [Rhodopseudomonas palustris BisB18]
 sp|Q211F4.1|RS3_RHOPB RecName: Full=30S ribosomal protein S3
 gb|ABD88982.1| SSU ribosomal protein S3P [Rhodopseudomonas palustris BisB18]
          Length = 232

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/233 (95%), Positives = 229/233 (98%), Gaps = 1/233 (0%)

Query: 1   MGQKINPIGLRLGINRTWDSRWFAGKQEYGKLLHEDVKIREILHKELKQAAVARIVIERP 60
           MGQKINPIGLRLGINRTWDSRW+AGK EYGKLLHEDVKIREILHKELKQAAVARIVIERP
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWYAGKNEYGKLLHEDVKIREILHKELKQAAVARIVIERP 60

Query: 61  HKKCRVTIHSARPGVVIGKKGADIDKLRKKVADITSSDVVINIVEIRKPELDATLVAESI 120
           HKKCRVTIHSARPGVVIGKKGADIDKLRKKVADIT+SDVVINIVEIRKPELDATLVAESI
Sbjct: 61  HKKCRVTIHSARPGVVIGKKGADIDKLRKKVADITASDVVINIVEIRKPELDATLVAESI 120

Query: 121 AQQLERRVAFRRAMKRAVQSAMRLGAGGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180
           AQQLERRVAFRRAMKRAVQSAMRLGA GIRINCSGRLGGAEIARMEWYREGRVPLHTLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 DVDYGVATAFTTFGTCGVKVWIFKGEILEHDPMAQDKKMAEGDSTPRSRRDAA 233
           D+DYGVATAFTTFGTCGVKVWIFKGEILEHDPMAQDK+MAEGD++ R RRDAA
Sbjct: 181 DIDYGVATAFTTFGTCGVKVWIFKGEILEHDPMAQDKRMAEGDNS-RPRRDAA 232


>ref|YP_001205111.1| 30S ribosomal protein S3 [Bradyrhizobium sp. ORS 278]
 sp|A4YSJ8.1|RS3_BRASO RecName: Full=30S ribosomal protein S3
 emb|CAL76874.1| 30S ribosomal subunit protein S3 [Bradyrhizobium sp. ORS 278]
          Length = 236

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/236 (94%), Positives = 228/236 (96%), Gaps = 3/236 (1%)

Query: 1   MGQKINPIGLRLGINRTWDSRWFAGKQEYGKLLHEDVKIREILHKELKQAAVARIVIERP 60
           MGQKINPIGLRLGINRTWDSRWFAGK EYGKLLHEDVKIREILHKELKQAAVARIVIERP
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWFAGKAEYGKLLHEDVKIREILHKELKQAAVARIVIERP 60

Query: 61  HKKCRVTIHSARPGVVIGKKGADIDKLRKKVADITSSDVVINIVEIRKPELDATLVAESI 120
           HKKCRVTIHSARPGVVIGKKGADIDKLRK+VADITSSDVVINIVEIRKPELDATLVAESI
Sbjct: 61  HKKCRVTIHSARPGVVIGKKGADIDKLRKRVADITSSDVVINIVEIRKPELDATLVAESI 120

Query: 121 AQQLERRVAFRRAMKRAVQSAMRLGAGGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180
           AQQLERRVAFRRAMKRAVQSAMRLGA GIRINCSGRLGGAEIARMEWYREGRVPLHTLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 DVDYGVATAFTTFGTCGVKVWIFKGEILEHDPMAQDKKMAEG---DSTPRSRRDAA 233
           D+DYGVATAFTTFGTCGVKVWIFKGEILEHDPMAQDK+M EG     +PRSRRDAA
Sbjct: 181 DIDYGVATAFTTFGTCGVKVWIFKGEILEHDPMAQDKRMNEGGGESPSPRSRRDAA 236