BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0247.0010.p         (445 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001205105.1| 50S ribosomal protein L3 [Bradyrhizobium sp....   455   e-126
ref|YP_001240977.1| 50S ribosomal protein L3 [Bradyrhizobium sp....   452   e-125
ref|ZP_01046115.1| 50S ribosomal protein L3 [Nitrobacter sp. Nb-...   449   e-124
ref|YP_576827.1| 50S ribosomal protein L3 [Nitrobacter hamburgen...   445   e-123
ref|YP_317977.1| 50S ribosomal protein L3 [Nitrobacter winograds...   444   e-122

>ref|YP_001205105.1| 50S ribosomal protein L3 [Bradyrhizobium sp. ORS 278]
 sp|A4YSJ2.1|RL3_BRASO RecName: Full=50S ribosomal protein L3
 emb|CAL76868.1| 50S ribosomal subunit protein L3 [Bradyrhizobium sp. ORS 278]
          Length = 239

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/232 (95%), Positives = 230/232 (99%)

Query: 1   MRSGVIAQKVGMTRVFTETGEHIPVTVLKLGNCQVLGHRTTEKNGYVALQLGSGARKTVY 60
           MRSGVIAQKVGMTRVFTETGEHIPVTVLKLGNCQV+GHRTTEKNGYVALQLGSG+RKTVY
Sbjct: 1   MRSGVIAQKVGMTRVFTETGEHIPVTVLKLGNCQVVGHRTTEKNGYVALQLGSGSRKTVY 60

Query: 61  MPKAERGQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSIGKGFA 120
           MPKAERGQFAVAKVEPKRK+AEFRVSED+LIPVGAEIQADHFVVGQFVDVTGTS+GKGFA
Sbjct: 61  MPKAERGQFAVAKVEPKRKLAEFRVSEDSLIPVGAEIQADHFVVGQFVDVTGTSVGKGFA 120

Query: 121 GGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRITTLNLRVVS 180
           GGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKT+KNKKMPGHMGVDRITTLNLRVV 
Sbjct: 121 GGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTWKNKKMPGHMGVDRITTLNLRVVQ 180

Query: 181 TDVERGLILVEGAVPGSKGGWISVRDAVKKPLPKDAPKPGKFKVAGGEAAEA 232
           TDVERGLILVEGAVPGSKGGWISVRDAVKKPLPK+APKPGKFKVAG +AAEA
Sbjct: 181 TDVERGLILVEGAVPGSKGGWISVRDAVKKPLPKEAPKPGKFKVAGEQAAEA 232


>ref|YP_001240977.1| 50S ribosomal protein L3 [Bradyrhizobium sp. BTAi1]
 sp|A5ELM7.1|RL3_BRASB RecName: Full=50S ribosomal protein L3
 gb|ABQ37071.1| LSU ribosomal protein L3P [Bradyrhizobium sp. BTAi1]
          Length = 239

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/232 (94%), Positives = 229/232 (98%)

Query: 1   MRSGVIAQKVGMTRVFTETGEHIPVTVLKLGNCQVLGHRTTEKNGYVALQLGSGARKTVY 60
           MRSGVIAQKVGMTRVFTETGEHIPVTVLKLGNCQV+GHRTTEKNGYVALQLGSG+RKTVY
Sbjct: 1   MRSGVIAQKVGMTRVFTETGEHIPVTVLKLGNCQVVGHRTTEKNGYVALQLGSGSRKTVY 60

Query: 61  MPKAERGQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSIGKGFA 120
           MPKAERGQFAVAKVEPKRKVAEFRVSED+LIPVGAEI ADHFVVGQFVDVTGT++GKGFA
Sbjct: 61  MPKAERGQFAVAKVEPKRKVAEFRVSEDSLIPVGAEILADHFVVGQFVDVTGTTVGKGFA 120

Query: 121 GGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRITTLNLRVVS 180
           GGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKT+KNKKMPGHMGVDR+TTLNLRVV 
Sbjct: 121 GGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTWKNKKMPGHMGVDRVTTLNLRVVQ 180

Query: 181 TDVERGLILVEGAVPGSKGGWISVRDAVKKPLPKDAPKPGKFKVAGGEAAEA 232
           TDVERGLILVEGAVPGSKGGWISVRDAVKKPLPK+APKPGKFKVAG +AAEA
Sbjct: 181 TDVERGLILVEGAVPGSKGGWISVRDAVKKPLPKEAPKPGKFKVAGEQAAEA 232


>ref|ZP_01046115.1| 50S ribosomal protein L3 [Nitrobacter sp. Nb-311A]
 gb|EAQ35919.1| 50S ribosomal protein L3 [Nitrobacter sp. Nb-311A]
          Length = 247

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/230 (94%), Positives = 225/230 (97%)

Query: 1   MRSGVIAQKVGMTRVFTETGEHIPVTVLKLGNCQVLGHRTTEKNGYVALQLGSGARKTVY 60
           MRSGVIAQKVGMTRVFTE GEHIPVTVLKL NCQVLGHRT+EKNGYVALQLGSGARKTVY
Sbjct: 1   MRSGVIAQKVGMTRVFTEAGEHIPVTVLKLSNCQVLGHRTSEKNGYVALQLGSGARKTVY 60

Query: 61  MPKAERGQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSIGKGFA 120
           MPKAERGQFAVAKVEPKRKVAEFRVS+D+LIPVGAEIQADHFVVGQFVDVTGTS+GKG+A
Sbjct: 61  MPKAERGQFAVAKVEPKRKVAEFRVSQDSLIPVGAEIQADHFVVGQFVDVTGTSVGKGYA 120

Query: 121 GGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRITTLNLRVVS 180
           GGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRITTLNLRVV 
Sbjct: 121 GGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRITTLNLRVVQ 180

Query: 181 TDVERGLILVEGAVPGSKGGWISVRDAVKKPLPKDAPKPGKFKVAGGEAA 230
           TDVERGLILVEGAVPGSKGGWI+VRDAVKKPLPK+APKPGKFKVAGG  A
Sbjct: 181 TDVERGLILVEGAVPGSKGGWIAVRDAVKKPLPKEAPKPGKFKVAGGAQA 230


>ref|YP_576827.1| 50S ribosomal protein L3 [Nitrobacter hamburgensis X14]
 sp|Q1QN30.1|RL3_NITHX RecName: Full=50S ribosomal protein L3
 gb|ABE62367.1| LSU ribosomal protein L3P [Nitrobacter hamburgensis X14]
          Length = 241

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/232 (92%), Positives = 225/232 (96%)

Query: 1   MRSGVIAQKVGMTRVFTETGEHIPVTVLKLGNCQVLGHRTTEKNGYVALQLGSGARKTVY 60
           MRSGVIAQKVGMTRVFT+ GEHIPVTVL+L NCQVLGHRT+EKNGYVALQLGSGARKTVY
Sbjct: 1   MRSGVIAQKVGMTRVFTDAGEHIPVTVLRLSNCQVLGHRTSEKNGYVALQLGSGARKTVY 60

Query: 61  MPKAERGQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSIGKGFA 120
           +PKAERGQFAVAKVEPKRKVAEFRVSED+LIPVGAEIQADHFVVGQFVDVTGTS+GKGFA
Sbjct: 61  LPKAERGQFAVAKVEPKRKVAEFRVSEDSLIPVGAEIQADHFVVGQFVDVTGTSVGKGFA 120

Query: 121 GGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRITTLNLRVVS 180
           GGMKRWNFGGLRATHGVS+SHRSIGSTGGRQDPGKTFKNKKMPGHMGVDR+TTLNLRVV 
Sbjct: 121 GGMKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRVTTLNLRVVQ 180

Query: 181 TDVERGLILVEGAVPGSKGGWISVRDAVKKPLPKDAPKPGKFKVAGGEAAEA 232
           TDVERGLILVEGAVPGSKGGWI+VRDAVKKPLPKDAPKPGKFKVAG +   A
Sbjct: 181 TDVERGLILVEGAVPGSKGGWIAVRDAVKKPLPKDAPKPGKFKVAGDDKVTA 232


>ref|YP_317977.1| 50S ribosomal protein L3 [Nitrobacter winogradskyi Nb-255]
 sp|Q3SSW6.1|RL3_NITWN RecName: Full=50S ribosomal protein L3
 gb|ABA04625.1| LSU ribosomal protein L3P [Nitrobacter winogradskyi Nb-255]
          Length = 247

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/226 (95%), Positives = 221/226 (97%)

Query: 1   MRSGVIAQKVGMTRVFTETGEHIPVTVLKLGNCQVLGHRTTEKNGYVALQLGSGARKTVY 60
           MRSGVIAQKVGMTRVFTE GEHIPVTVLKL NCQVLGHRT+EKNGYVALQLGSGARKTVY
Sbjct: 1   MRSGVIAQKVGMTRVFTEAGEHIPVTVLKLSNCQVLGHRTSEKNGYVALQLGSGARKTVY 60

Query: 61  MPKAERGQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSIGKGFA 120
           MPKAERGQFAVAKV PKRKVAEFRVSED+LIPVGAEIQADHFVVGQFVDVTGTS+GKG+A
Sbjct: 61  MPKAERGQFAVAKVAPKRKVAEFRVSEDSLIPVGAEIQADHFVVGQFVDVTGTSVGKGYA 120

Query: 121 GGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRITTLNLRVVS 180
           GGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRITTLNLRVV 
Sbjct: 121 GGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRITTLNLRVVQ 180

Query: 181 TDVERGLILVEGAVPGSKGGWISVRDAVKKPLPKDAPKPGKFKVAG 226
           TDVERGLILVEGAVPGSKGGWI+VRDAVKKPLPK+APKPGKFKV G
Sbjct: 181 TDVERGLILVEGAVPGSKGGWIAVRDAVKKPLPKEAPKPGKFKVVG 226