BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0247.0004.p         (123 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAL76863.1| 30S ribosomal subunit protein S12 [Bradyrhizobiu...   248   2e-64
ref|YP_001240982.1| 30S ribosomal protein S12 [Bradyrhizobium sp...   248   2e-64
ref|ZP_07028453.1| ribosomal protein S12 [Afipia sp. 1NLS2] >gi|...   247   5e-64
gb|ABJ07521.1| SSU ribosomal protein S12P [Rhodopseudomonas palu...   246   1e-63
ref|NP_772045.1| 30S ribosomal protein S12 [Bradyrhizobium japon...   246   1e-63

>emb|CAL76863.1| 30S ribosomal subunit protein S12 [Bradyrhizobium sp. ORS 278]
          Length = 130

 Score =  248 bits (634), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MPTINQLIANPREVQKSRKKVPALQQSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG 60
           MPTINQLIANPREVQKSRKKVPALQQSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG
Sbjct: 8   MPTINQLIANPREVQKSRKKVPALQQSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG 67

Query: 61  FEVIGYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHILRGVLDTQGVKNRKQRRSKYGAK 120
           FEVIGYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHILRGVLDTQGVKNRKQRRSKYGAK
Sbjct: 68  FEVIGYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHILRGVLDTQGVKNRKQRRSKYGAK 127

Query: 121 RPK 123
           RPK
Sbjct: 128 RPK 130


>ref|YP_001240982.1| 30S ribosomal protein S12 [Bradyrhizobium sp. BTAi1]
 ref|YP_001205100.2| 30S ribosomal protein S12 [Bradyrhizobium sp. ORS 278]
 sp|A5ELN2.1|RS12_BRASB RecName: Full=30S ribosomal protein S12
 sp|A4YSI7.2|RS12_BRASO RecName: Full=30S ribosomal protein S12
 gb|ABQ37076.1| SSU ribosomal protein S12P [Bradyrhizobium sp. BTAi1]
          Length = 123

 Score =  248 bits (633), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MPTINQLIANPREVQKSRKKVPALQQSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG 60
           MPTINQLIANPREVQKSRKKVPALQQSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG
Sbjct: 1   MPTINQLIANPREVQKSRKKVPALQQSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG 60

Query: 61  FEVIGYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHILRGVLDTQGVKNRKQRRSKYGAK 120
           FEVIGYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHILRGVLDTQGVKNRKQRRSKYGAK
Sbjct: 61  FEVIGYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHILRGVLDTQGVKNRKQRRSKYGAK 120

Query: 121 RPK 123
           RPK
Sbjct: 121 RPK 123


>ref|ZP_07028453.1| ribosomal protein S12 [Afipia sp. 1NLS2]
 ref|ZP_08630399.1| SSU ribosomal protein S12p [Bradyrhizobiaceae bacterium SG-6C]
 gb|EFI50443.1| ribosomal protein S12 [Afipia sp. 1NLS2]
 gb|EGP06778.1| SSU ribosomal protein S12p [Bradyrhizobiaceae bacterium SG-6C]
          Length = 123

 Score =  247 bits (630), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 122/123 (99%), Positives = 122/123 (99%)

Query: 1   MPTINQLIANPREVQKSRKKVPALQQSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG 60
           MPTINQLIANPRE QKSRKKVPALQQSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG
Sbjct: 1   MPTINQLIANPREAQKSRKKVPALQQSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG 60

Query: 61  FEVIGYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHILRGVLDTQGVKNRKQRRSKYGAK 120
           FEVIGYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHILRGVLDTQGVKNRKQRRSKYGAK
Sbjct: 61  FEVIGYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHILRGVLDTQGVKNRKQRRSKYGAK 120

Query: 121 RPK 123
           RPK
Sbjct: 121 RPK 123


>gb|ABJ07521.1| SSU ribosomal protein S12P [Rhodopseudomonas palustris BisA53]
          Length = 140

 Score =  246 bits (627), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 122/123 (99%), Positives = 122/123 (99%)

Query: 1   MPTINQLIANPREVQKSRKKVPALQQSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG 60
           MPTINQLIANPR VQKSRKKVPALQQSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG
Sbjct: 18  MPTINQLIANPRVVQKSRKKVPALQQSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG 77

Query: 61  FEVIGYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHILRGVLDTQGVKNRKQRRSKYGAK 120
           FEVIGYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHILRGVLDTQGVKNRKQRRSKYGAK
Sbjct: 78  FEVIGYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHILRGVLDTQGVKNRKQRRSKYGAK 137

Query: 121 RPK 123
           RPK
Sbjct: 138 RPK 140


>ref|NP_772045.1| 30S ribosomal protein S12 [Bradyrhizobium japonicum USDA 110]
 sp|Q89J79.1|RS12_BRAJA RecName: Full=30S ribosomal protein S12
 dbj|BAC50670.1| 30S ribosomal protein S12 [Bradyrhizobium japonicum USDA 110]
          Length = 123

 Score =  246 bits (627), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 122/123 (99%), Positives = 122/123 (99%)

Query: 1   MPTINQLIANPREVQKSRKKVPALQQSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG 60
           MPTINQLIA PREVQKSRKKVPALQQSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG
Sbjct: 1   MPTINQLIAQPREVQKSRKKVPALQQSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG 60

Query: 61  FEVIGYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHILRGVLDTQGVKNRKQRRSKYGAK 120
           FEVIGYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHILRGVLDTQGVKNRKQRRSKYGAK
Sbjct: 61  FEVIGYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHILRGVLDTQGVKNRKQRRSKYGAK 120

Query: 121 RPK 123
           RPK
Sbjct: 121 RPK 123