BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0002.p (403 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001240983.1| hypothetical protein BBta_5077 [Bradyrhizobi... 535 e-150 ref|NP_772046.1| hypothetical protein blr5406 [Bradyrhizobium ja... 531 e-149 ref|YP_001205098.1| hypothetical protein BRADO3058 [Bradyrhizobi... 517 e-144 ref|YP_782503.1| monooxygenase protein [Rhodopseudomonas palustr... 484 e-134 ref|YP_576817.1| monooxygenase, FAD-binding [Nitrobacter hamburg... 475 e-132 >ref|YP_001240983.1| hypothetical protein BBta_5077 [Bradyrhizobium sp. BTAi1] gb|ABQ37077.1| hypothetical protein BBta_5077 [Bradyrhizobium sp. BTAi1] Length = 407 Score = 535 bits (1379), Expect = e-150, Method: Compositional matrix adjust. Identities = 254/376 (67%), Positives = 300/376 (79%) Query: 2 RYTDIAIIGGGLAGSTAAAMLGRAGIPTVLIDPHQVYPFDFRVEKIGGDLQLERFARTGL 61 RYTDIAIIGGGLAGS AA MLGRAGI +L+DPH VYP DFR+EKI G Q+ RF RTG+ Sbjct: 3 RYTDIAIIGGGLAGSIAAGMLGRAGIAAILLDPHTVYPPDFRIEKISGAEQIARFRRTGV 62 Query: 62 AESVLRSATLDGENWIARFGRLLDRQPSRQYGIMYDALIAAIRNEVAGPAEFICDKVINV 121 A+ LR ATL ENWIARFG +LDR P QYGIMYDAL+AA+R E+ I K + + Sbjct: 63 ADKALRQATLAAENWIARFGYVLDRAPVPQYGIMYDALVAAVREEIPDSVTRIVAKAVAI 122 Query: 122 ATSSERQRLVLADGEEISARLVVLANGLNVGLRRMLGIERLVTSFCHSISLGFDFVPVGR 181 S ERQ + L+DG+ +SARLVVLANGLNVGLR MLGI R +TS HSIS+GFD PVGR Sbjct: 123 TASEERQEVTLSDGQTVSARLVVLANGLNVGLRHMLGITRKITSPSHSISVGFDLAPVGR 182 Query: 182 PAFPFAAMTYFSERPSDRIPYITLFPVGDRMRANLFTYRKADDPWLRAMRRNPVETLNAA 241 PAF F AMTYF ER S R+PYITLFP+G+RMRANLF YR+ADDPW+RA+RRNP ETL+AA Sbjct: 183 PAFAFPAMTYFQERASARVPYITLFPIGERMRANLFAYREADDPWVRAIRRNPAETLDAA 242 Query: 242 LPRLRRLTGEFDIAGDIKIRPADIYVSTGYRQAGIALVGDAFASTCPVTGTGTDKVFTDV 301 LP LRR+TG++ + G++K+RPAD+ V++G R G+ L+GDAF +TCPVTGTG+DKVFTDV Sbjct: 243 LPGLRRITGDYAVTGEVKVRPADLMVNSGVRMPGVVLIGDAFCTTCPVTGTGSDKVFTDV 302 Query: 302 VQLCNVHIPAWLSTDGMGEEKITAFYDDPVKTACDAWSNAKAFSFREVSVGSGPTWQAQR 361 +LCNVHIP WL+TDGMGE KI AFYDDPVKTACDAWS KA+ +R++S G+GP W AQR Sbjct: 303 ERLCNVHIPRWLATDGMGEGKIAAFYDDPVKTACDAWSLQKAWRYRDISTGTGPYWLAQR 362 Query: 362 WARFFGYLGRGWLRRL 377 WARF LGRG RL Sbjct: 363 WARFAVSLGRGVRHRL 378 >ref|NP_772046.1| hypothetical protein blr5406 [Bradyrhizobium japonicum USDA 110] dbj|BAC50671.1| blr5406 [Bradyrhizobium japonicum USDA 110] Length = 415 Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust. Identities = 253/377 (67%), Positives = 294/377 (77%) Query: 1 MRYTDIAIIGGGLAGSTAAAMLGRAGIPTVLIDPHQVYPFDFRVEKIGGDLQLERFARTG 60 MRYTDIAIIGGGL+GSTAAAMLGRAGI TVLIDPH+ YP DFRVEK+ G Q+ERF +TG Sbjct: 1 MRYTDIAIIGGGLSGSTAAAMLGRAGISTVLIDPHESYPADFRVEKLSGHEQIERFLKTG 60 Query: 61 LAESVLRSATLDGENWIARFGRLLDRQPSRQYGIMYDALIAAIRNEVAGPAEFICDKVIN 120 +AESVLR AT GENWIARFGRLLD+ PSRQ+ I+YD+L+ A+R+E+ E +C K + Sbjct: 61 IAESVLRRATFAGENWIARFGRLLDKAPSRQFNILYDSLVNAVRDEIPATVERVCAKALA 120 Query: 121 VATSSERQRLVLADGEEISARLVVLANGLNVGLRRMLGIERLVTSFCHSISLGFDFVPVG 180 V TS ERQ++ LA+ E ISARLVVLANGLNVGLR LGI R V S CHSIS+GFD +P G Sbjct: 121 VETSPERQKITLANDETISARLVVLANGLNVGLRHQLGIARKVVSACHSISIGFDVMPAG 180 Query: 181 RPAFPFAAMTYFSERPSDRIPYITLFPVGDRMRANLFTYRKADDPWLRAMRRNPVETLNA 240 R +F F A+TYFSERPSDR PYI+LFPVG RMRANLF YR DDPWL +RR P ETL+ Sbjct: 181 RASFDFPALTYFSERPSDRTPYISLFPVGTRMRANLFVYRSFDDPWLHELRRAPAETLDT 240 Query: 241 ALPRLRRLTGEFDIAGDIKIRPADIYVSTGYRQAGIALVGDAFASTCPVTGTGTDKVFTD 300 LPRL+R+TG FDI G++K+RP D+YV+ Q GI LVGDAFA++CPV GTG DKVFTD Sbjct: 241 TLPRLKRITGAFDIPGELKVRPVDLYVNDPRGQPGIVLVGDAFATSCPVAGTGCDKVFTD 300 Query: 301 VVQLCNVHIPAWLSTDGMGEEKITAFYDDPVKTACDAWSNAKAFSFREVSVGSGPTWQAQ 360 V +LCNV+IP WLS DGM KI FY DPVK ACD WS AKAF FR VS+ + P W AQ Sbjct: 301 VERLCNVYIPQWLSADGMSAAKIAGFYADPVKQACDQWSAAKAFDFRSVSIATSPYWTAQ 360 Query: 361 RWARFFGYLGRGWLRRL 377 RWARF + +G LR L Sbjct: 361 RWARFIAWSAQGLLRPL 377 >ref|YP_001205098.1| hypothetical protein BRADO3058 [Bradyrhizobium sp. ORS 278] emb|CAL76861.1| conserved hypothetical protein; putative hydroxylase with FAD/NAD(P)-binding domain [Bradyrhizobium sp. ORS 278] Length = 403 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 249/388 (64%), Positives = 293/388 (75%) Query: 2 RYTDIAIIGGGLAGSTAAAMLGRAGIPTVLIDPHQVYPFDFRVEKIGGDLQLERFARTGL 61 YTDIAIIGGGLAGS AAMLGRAGI +L+DPH VYP DFR+EKI G Q+ RF TG+ Sbjct: 3 HYTDIAIIGGGLAGSITAAMLGRAGIAAILVDPHVVYPPDFRIEKISGAEQIARFRCTGV 62 Query: 62 AESVLRSATLDGENWIARFGRLLDRQPSRQYGIMYDALIAAIRNEVAGPAEFICDKVINV 121 A+ L ATL ENWIARFG +LDR P QYGI+YDAL+AA+R E+ P I K + Sbjct: 63 ADKALHRATLAAENWIARFGYVLDRAPVHQYGILYDALVAAVREEIPSPVLKIAAKATAI 122 Query: 122 ATSSERQRLVLADGEEISARLVVLANGLNVGLRRMLGIERLVTSFCHSISLGFDFVPVGR 181 +RQ +VL++GE ISARLVVL+NGLNVGLR LGI R +TS HSIS+GFD PVG Sbjct: 123 TPGEDRQSVVLSNGETISARLVVLSNGLNVGLRHQLGITRTITSPAHSISVGFDLEPVGS 182 Query: 182 PAFPFAAMTYFSERPSDRIPYITLFPVGDRMRANLFTYRKADDPWLRAMRRNPVETLNAA 241 AFPF AMTYF ER R+PYITLFP+G RMRANLF YR+ DDPWLRA+R +P ETL AA Sbjct: 183 AAFPFPAMTYFQERAGARVPYITLFPIGARMRANLFAYREVDDPWLRAVRHHPAETLAAA 242 Query: 242 LPRLRRLTGEFDIAGDIKIRPADIYVSTGYRQAGIALVGDAFASTCPVTGTGTDKVFTDV 301 LP L+R+TGE ++G++K+RPAD+ V++GYR G+ LVGDAF +TCPVTGTG+DKVFTDV Sbjct: 243 LPGLKRITGETAVSGEVKVRPADLIVNSGYRMPGVVLVGDAFCTTCPVTGTGSDKVFTDV 302 Query: 302 VQLCNVHIPAWLSTDGMGEEKITAFYDDPVKTACDAWSNAKAFSFREVSVGSGPTWQAQR 361 +LCNVHIP WL+T GM E KI +YDDPVKTACDAWS KA+ FREVSVG+GP W AQR Sbjct: 303 ERLCNVHIPRWLATHGMSEAKIATYYDDPVKTACDAWSLQKAWQFREVSVGTGPYWLAQR 362 Query: 362 WARFFGYLGRGWLRRLHNPAAAASTTRP 389 WARF LGRG R+ AA+ P Sbjct: 363 WARFAVSLGRGVRHRMVGAPVAATARSP 390 >ref|YP_782503.1| monooxygenase protein [Rhodopseudomonas palustris BisA53] gb|ABJ07523.1| monooxygenase, FAD-binding protein [Rhodopseudomonas palustris BisA53] Length = 391 Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust. Identities = 229/377 (60%), Positives = 284/377 (75%), Gaps = 1/377 (0%) Query: 1 MRYTDIAIIGGGLAGSTAAAMLGRAGIPTVLIDPHQVYPFDFRVEKIGGDLQLERFARTG 60 MR TDIAI+GGGLAGS AAAMLGRAG+ +LIDPH VYP DFR EK+GG+ QL +TG Sbjct: 1 MRTTDIAIVGGGLAGSIAAAMLGRAGVSAMLIDPHPVYPVDFRCEKLGGN-QLAILHKTG 59 Query: 61 LAESVLRSATLDGENWIARFGRLLDRQPSRQYGIMYDALIAAIRNEVAGPAEFICDKVIN 120 LAE+ LR+ T DG WIARFGRL+DR+PS QYGI Y+AL+ A+R E+ + K Sbjct: 60 LAEAALRATTHDGSVWIARFGRLVDRKPSDQYGIRYEALVNAMRAEIPARIPLLHAKATA 119 Query: 121 VATSSERQRLVLADGEEISARLVVLANGLNVGLRRMLGIERLVTSFCHSISLGFDFVPVG 180 ++T QR+ L+DG +ISARLVVLANGLN GLRR LGIE + S CHS+++GFD P+G Sbjct: 120 ISTGETYQRVTLSDGVDISARLVVLANGLNKGLRRTLGIEHRIVSECHSVTIGFDLAPIG 179 Query: 181 RPAFPFAAMTYFSERPSDRIPYITLFPVGDRMRANLFTYRKADDPWLRAMRRNPVETLNA 240 R FPF A+TY+ ERPSDR+ Y+TLFP+GD MRANL YR DDPWL+ +R P +TL+ Sbjct: 180 RQHFPFRALTYYPERPSDRMAYLTLFPIGDAMRANLMVYRPLDDPWLQQLRCAPEDTLHQ 239 Query: 241 ALPRLRRLTGEFDIAGDIKIRPADIYVSTGYRQAGIALVGDAFASTCPVTGTGTDKVFTD 300 +PRL RLTG+F +AG++KIRPAD+Y G+RQAG+ L+GDAFA++CP GTGTDKVFTD Sbjct: 240 LMPRLGRLTGDFSVAGELKIRPADLYAVEGHRQAGLVLIGDAFATSCPAAGTGTDKVFTD 299 Query: 301 VVQLCNVHIPAWLSTDGMGEEKITAFYDDPVKTACDAWSNAKAFSFREVSVGSGPTWQAQ 360 +LCN+HIP WL+T GMG +KI AFYDDPVK ACD + KAF R +S +G TWQA+ Sbjct: 300 AERLCNIHIPNWLATPGMGRDKIEAFYDDPVKVACDDRAREKAFHLRALSTDNGLTWQAR 359 Query: 361 RWARFFGYLGRGWLRRL 377 RWARF +GW RR+ Sbjct: 360 RWARFVARSAQGWGRRI 376 >ref|YP_576817.1| monooxygenase, FAD-binding [Nitrobacter hamburgensis X14] gb|ABE62357.1| monooxygenase, FAD-binding protein [Nitrobacter hamburgensis X14] Length = 398 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 220/372 (59%), Positives = 282/372 (75%), Gaps = 1/372 (0%) Query: 1 MRYTDIAIIGGGLAGSTAAAMLGRAGIPTVLIDPHQVYPFDFRVEKIGGDLQLERFARTG 60 MRYTDIAI+GGGLAGST AAML RAGI ++IDPH YP D R EK+GG Q R +TG Sbjct: 1 MRYTDIAIVGGGLAGSTTAAMLSRAGIAAIMIDPHTTYPPDLRCEKLGGT-QTPRLRKTG 59 Query: 61 LAESVLRSATLDGENWIARFGRLLDRQPSRQYGIMYDALIAAIRNEVAGPAEFICDKVIN 120 E +LR+ T+DGE W ARFG ++ ++PS Q+G+MYD L+ +R +++ E + KV+ Sbjct: 60 FDEEILRATTVDGEVWEARFGFVVAKKPSDQHGVMYDTLVNTMRAQISSSVETLYTKVVE 119 Query: 121 VATSSERQRLVLADGEEISARLVVLANGLNVGLRRMLGIERLVTSFCHSISLGFDFVPVG 180 VATSSERQRLVLADG ISARL+VLANGL++ LR +LG+ R + S CHS++LGFD PV Sbjct: 120 VATSSERQRLVLADGGTISARLIVLANGLSISLRHLLGLGRRIISECHSVTLGFDVAPVD 179 Query: 181 RPAFPFAAMTYFSERPSDRIPYITLFPVGDRMRANLFTYRKADDPWLRAMRRNPVETLNA 240 RPAFPF A+TY+ +R R+ Y+++FP+G+ MRAN+ YR DD W R R NP T+ A Sbjct: 180 RPAFPFPALTYWPKRSDARMAYLSIFPIGNTMRANMMVYRSMDDIWFREFRENPEATMRA 239 Query: 241 ALPRLRRLTGEFDIAGDIKIRPADIYVSTGYRQAGIALVGDAFASTCPVTGTGTDKVFTD 300 +P L R+TG F ++G IKIRPAD+YV+ +RQAG+ L+GDAFA++CP GTGTDKVFTD Sbjct: 240 VMPGLDRMTGGFKVSGPIKIRPADLYVTDNHRQAGVVLIGDAFATSCPAAGTGTDKVFTD 299 Query: 301 VVQLCNVHIPAWLSTDGMGEEKITAFYDDPVKTACDAWSNAKAFSFREVSVGSGPTWQAQ 360 V +LCNVHIP+WL+T+GMG KI FYDDPVKTACDAWS AKA+ R +S+ +G TW+A+ Sbjct: 300 VERLCNVHIPSWLATEGMGRAKIDMFYDDPVKTACDAWSAAKAWHLRSLSIDNGLTWRAR 359 Query: 361 RWARFFGYLGRG 372 RWARF G L +G Sbjct: 360 RWARFIGRLAQG 371