BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0246.0037.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_488011.1| molybdopterin dehydrogenase, FAD-binding [Rhodo... 201 1e-49 ref|ZP_03543695.1| molybdopterin dehydrogenase FAD-binding [Coma... 146 5e-33 ref|YP_003432052.1| carbon monoxide dehydrogenase middle subunit... 144 2e-32 ref|YP_003319657.1| molybdopterin dehydrogenase FAD-binding prot... 142 5e-32 ref|YP_728906.1| 4-hydroxybenzoyl-CoA reductase FAD-binding subu... 140 3e-31 >ref|YP_488011.1| molybdopterin dehydrogenase, FAD-binding [Rhodopseudomonas palustris HaA2] gb|ABD09100.1| Molybdopterin dehydrogenase, FAD-binding [Rhodopseudomonas palustris HaA2] Length = 288 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 126/290 (43%), Positives = 157/290 (54%), Gaps = 12/290 (4%) Query: 4 SPFQFERPSTIADAV---RAVGDSGDGMFYAGGTELLLAMKMRVIRADRLIDIKGIPGLD 60 +PFQ RP+ + A+ GD D +YAGGTELLLA+K RV+R + LID+K I G D Sbjct: 4 APFQLHRPTELEAALALREQFGD--DSAYYAGGTELLLALKARVLRYEHLIDLKRIAGFD 61 Query: 61 CIAVNDMNEIEIGARCTHKKIAGDSVIREHVPALASLCAEVANIRVRNVGTIGGNLCFGE 120 +A D NE+ IG TH ++A D +IRE +PA A L V NIRVR GT+ GNLCF E Sbjct: 62 RLA-RDGNELVIGPLVTHLRLATDPLIREFLPAYAKLSDNVGNIRVRASGTLAGNLCFSE 120 Query: 121 PHADPPTMLAALKARLVLEGSKGTREIHAEDFIRSEMETVREPDELLRVIVFPRPAG--P 178 PHADPP +L L A + L G G R + +FI T R DE+L I P P Sbjct: 121 PHADPPALLCLLGASVTLHGPDGRRSVPMAEFILGPFTTARADDEILTAIRVPLPTAGEQ 180 Query: 179 VTYRRFKHGERPSVNVAMAWSLNAGGSTIRSARVRVGALGSRPQPLTAVEDALRNVAVAE 238 YR F H E P+V VA A+ AG RV +G +G P VE AL V Sbjct: 181 FCYRSFGHLEYPAVGVAAAYQSQAGAPRY---RVWIGCIGDNPIHAEPVEAALAGVPPQA 237 Query: 239 ARRAIETALPAALDQLEVNADRHGGADYKRHLAGVLLLRNA-DEAIIAGG 287 + A A +L + D +G ADYKRHLA V + R D A +AGG Sbjct: 238 LSDVLPQAAEAMAAELPASDDIYGSADYKRHLAAVFIGRAVLDSAGVAGG 287 >ref|ZP_03543695.1| molybdopterin dehydrogenase FAD-binding [Comamonas testosteroni KF-1] gb|EED67981.1| molybdopterin dehydrogenase FAD-binding [Comamonas testosteroni KF-1] Length = 293 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 99/279 (35%), Positives = 145/279 (51%), Gaps = 10/279 (3%) Query: 6 FQFERPSTIADAVRAVGDSGD-GMFYAGGTELLLAMKMRVIRADRLIDIKGIPGLDCIAV 64 F F PS++A+A + + D GD AGG+ L+LAM+ R++ LI + +P L I Sbjct: 4 FDFAEPSSVAEASQMLADHGDDARIIAGGSALMLAMRQRMLAPTHLISVARLPRLHGIDF 63 Query: 65 NDMNEIEIGARCTHKKIAGDSVIREHVPALASLCAEVANIRVRNVGTIGGNLCFGEPHAD 124 + + IGA H +A +++ H P LA + A+VAN +VRN GTIGGNLC+ +P D Sbjct: 64 DPRQGLRIGAMSRHIDVARSELVKAHAPVLARMAAQVANPQVRNQGTIGGNLCYADPSTD 123 Query: 125 PPTMLAALKARLVLEGSKGTREIHAEDFIRSEMETVREPDELLRVIVFP--RPAGPVTYR 182 PP L AL A +VL ++G R + E+F+ T + DELL I P P Y Sbjct: 124 PPGCLMALDASVVLGSTRGERVLSMEEFLVDYYTTAMQSDELLLEIRVPLQAPGTQGEYT 183 Query: 183 RFKHG---ERPSVNVAMAWSLNAGGSTIRSARVRVGALGSRPQPLTAVEDALRNVAVAEA 239 RF RP V+VA+ + G AR+ VGA P L ED LR + A Sbjct: 184 RFLRTAAEHRPLVSVALV--VQREGQICHQARLVVGASTPVPTRLRRAEDCLRGKTL-NA 240 Query: 240 RRAIETALPAALDQLEVNADRHGGADYKRHLAGVLLLRN 278 + A + A A D ++ +D G ++++R + GV+ R Sbjct: 241 QLAAQVAAIVAED-IQPVSDLRGSSEFRRAMVGVVTRRT 278 >ref|YP_003432052.1| carbon monoxide dehydrogenase middle subunit [Hydrogenobacter thermophilus TK-6] dbj|BAI68851.1| carbon monoxide dehydrogenase middle subunit [Hydrogenobacter thermophilus TK-6] gb|ADO44786.1| molybdopterin dehydrogenase FAD-binding protein [Hydrogenobacter thermophilus TK-6] Length = 285 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 105/294 (35%), Positives = 158/294 (53%), Gaps = 22/294 (7%) Query: 1 MLPSPFQFERPSTIADAVRAVGDSGD-GMFYAGGTELLLAMKMRVIRADRLIDIKGIPGL 59 M+P F++ R +T+ +A+ V GD AGG L+ +K+R R ++IDI + L Sbjct: 1 MIPVSFEYYRANTLDEALELVKKFGDEAKVLAGGQSLIPMLKLRFARYSKIIDIGRLQEL 60 Query: 60 DCIAVNDMNEIEIGARCTHKKIAGDSVIREHVPALASLCAEVANIRVRNVGTIGGNLCFG 119 I + +I IG TH+++ S+I+E VP L++ +E+A+++VRN+GTI G+L Sbjct: 61 RYIK-EEGGQIWIGGLTTHREVEKSSLIKEKVPVLSACASEIADVQVRNMGTIAGSLSHA 119 Query: 120 EPHAD-PPTMLAALKARLVLEGSKGTREIHAEDFIRSEMETVREPDELLRVIVFP--RPA 176 +P AD PPTML AL A +V GSKG+REI A++F T EPDELL + P + Sbjct: 120 DPSADYPPTML-ALGATMVARGSKGSREIPADNFFVGTFTTALEPDELLVEVRVPVIKNN 178 Query: 177 GPVTYRRFKHGERPS-----VNVAMAWSLNAGGSTIRSARVRVGALGSRPQPLTAVEDAL 231 Y + H P+ VN A+ +SL G I ARV G + P T VE+ L Sbjct: 179 ERAAYMKIGH---PATGFAIVNCAVKFSLRDG--KIEGARVAFGGFVTVPYRDTRVENLL 233 Query: 232 --RNVAVAEARRAIETALPAALDQLEVNADRHGGADYKRHLAGVLLLRNADEAI 283 ++V++ +RA E ++ D + ADY+R LA L +R A A+ Sbjct: 234 AGKDVSLDTLKRASELVGEGQ----DIIGDYYADADYRRSLAKALFVRVARSAL 283 >ref|YP_003319657.1| molybdopterin dehydrogenase FAD-binding protein [Sphaerobacter thermophilus DSM 20745] gb|ACZ38835.1| molybdopterin dehydrogenase FAD-binding protein [Sphaerobacter thermophilus DSM 20745] Length = 287 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 94/287 (32%), Positives = 143/287 (49%), Gaps = 5/287 (1%) Query: 1 MLPSPFQFERPSTIADAVRAVGDSGDGMFYAGGTELLLAMKMRVIRADRLIDIKGIPGLD 60 M P+ F++ R +++ + V+ + DG AGG LL MK+R+ LIDI +P L Sbjct: 1 MYPAAFEYYRATSVPEIVQLLQQHPDGKILAGGHSLLPLMKLRLAEPAALIDIGRVPDLS 60 Query: 61 CIAVNDMNEIEIGARCTHKKIAGDSVIREHVPALASLCAEVANIRVRNVGTIGGNLCFGE 120 I + + I +GA T+ + VIR+ +P + V +I+VRN GT+GG + + Sbjct: 61 GIQ-DAGDSIVVGATTTYWDLLQSEVIRQSLPLITEAANVVGDIQVRNRGTLGGAMAHAD 119 Query: 121 PHADPPTMLAALKARLVLEGSKGTREIHAEDFIRSEMETVREPDELLRVIVFPRPAGPV- 179 P AD P + AL A + + G G R I A +F T PDE+L I+FP+P G Sbjct: 120 PAADMPAVALALDASIKVVGPSGERTIPASEFFVDMFTTALNPDEVLTQIIFPKPQGTSG 179 Query: 180 -TYRRFKHGERPSVNVAMAWSLNAGGSTIRSARVRVGALGSRPQPLTAVEDALRNVAVAE 238 Y +F H V +A + G +++ RV + G+ + +AVE AL E Sbjct: 180 QAYEKFAHPASGYAVVGVAAFVTLDGGKVQTVRVGITGAGTVAKRASAVEQALAGQEPTE 239 Query: 239 ARRAIETALPAALDQLEVNADRHGGADYKRHLAGVLLLRNADEAIIA 285 +AIE+A A + LE+N D +Y+ HLA V R A+ A Sbjct: 240 --QAIESASAHAAEGLELNGDIFASEEYRAHLARVFTQRALSRAVAA 284 >ref|YP_728906.1| 4-hydroxybenzoyl-CoA reductase FAD-binding subunit B [Ralstonia eutropha H16] emb|CAJ95541.1| 4-Hydroxybenzoyl-CoA reductase, FAD-binding subunit B [Ralstonia eutropha H16] Length = 288 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 102/282 (36%), Positives = 142/282 (50%), Gaps = 10/282 (3%) Query: 6 FQFERPSTIADAVRAVGDSGDGM-FYAGGTELLLAMKMRVIRADRLIDIKGIPGLDCIAV 64 F F P+T+A+A + + + GD AGGT L+L M+ R++ L+ + + L I Sbjct: 4 FAFLEPATVAEASQMLAELGDSCRILAGGTALMLGMRQRMLTPGHLVSLGRLKALRGITF 63 Query: 65 NDMNEIEIGARCTHKKIAGDSVIREHVPALASLCAEVANIRVRNVGTIGGNLCFGEPHAD 124 + + IGA H ++A +++ H P LAS+ + VAN +VRN GTIGGNLC+ +P D Sbjct: 64 DAREGLRIGALTLHAEVARSPLVQAHYPMLASMASRVANPQVRNQGTIGGNLCYADPATD 123 Query: 125 PPTMLAALKARLVLEGSKGTREIHAEDFIRSEMETVREPDELLRVIVFPRPAGPVT--YR 182 PP L AL AR+V+ G G REI EDF+ T PDE++ I P P Y Sbjct: 124 PPGCLMALGARIVVSGRGGEREIDIEDFLVDYYVTALAPDEIVTQIRVPAPGAGADGRYA 183 Query: 183 RFKHG---ERPSVNVAMAWSLNAGGSTIRSARVRVGALGSRPQPLTAVEDALRNVAVAEA 239 RF RP +VA+A + G+ AR+ VGA P L E L AV A Sbjct: 184 RFLRTAAEHRPLASVALA--VRREGAFCVEARLAVGASTPIPARLRRAEALLAGKAVT-A 240 Query: 240 RRAIETALPAALDQLEVNADRHGGADYKRHLAGVLLLRNADE 281 A ETA A D + +D G Y+R + V+ R E Sbjct: 241 ELAEETAAIVAAD-INAVSDMRGSESYRREMVRVVARRTIAE 281