BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0246.0034.p         (126 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003692236.1| MarR family transcriptional regulator [Stark...   137   6e-31
ref|NP_105647.1| transcriptional regulator [Mesorhizobium loti M...   112   1e-23
ref|YP_004609185.1| MarR family transcriptional regulator [Mesor...   112   2e-23
ref|ZP_05050446.1| transcriptional regulator, MarR family [Octad...   111   3e-23
ref|YP_004139808.1| MarR family transcription regulator [Mesorhi...   110   8e-23

>ref|YP_003692236.1| MarR family transcriptional regulator [Starkeya novella DSM 506]
 gb|ADH87617.1| transcriptional regulator, MarR family [Starkeya novella DSM 506]
          Length = 166

 Score =  137 bits (344), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 65/123 (52%), Positives = 89/123 (72%)

Query: 1   LRVALRTHTSIFVAKMIEELTPPQFSTLAKLREVGSCSQNHLGRLIHYDSATITGVINRL 60
           +RVA + HT++F A+MIE LTPPQF+TLAKLREVG CSQN LGRL++ D+ATI GV++RL
Sbjct: 43  MRVANQRHTALFAARMIENLTPPQFATLAKLREVGPCSQNRLGRLVYLDAATIKGVVDRL 102

Query: 61  KSRGLIKSSKDPLDPRRRQIELTDKGRRTADAAIETIGEISGETFAPLTREEFRTLTEIL 120
           ++RG + ++ DPLD RRR + L+++GR  AD AI    EI+  T  PL   E      +L
Sbjct: 103 RARGFVLTADDPLDRRRRAVGLSERGRAVADEAILVAREITEATLEPLDEAERAEALRLL 162

Query: 121 KKI 123
           +K+
Sbjct: 163 RKL 165


>ref|NP_105647.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 dbj|BAB51433.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 153

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/123 (50%), Positives = 82/123 (66%), Gaps = 1/123 (0%)

Query: 1   LRVALRTHTSIFVAKMIEELTPPQFSTLAKLREVGSCSQNHLGRLIHYDSATITGVINRL 60
           LR A + H SIF A  I +LTPPQF+ LAKLR+VG  SQN LG LI  D+AT+ GVI+RL
Sbjct: 31  LRKAHQRHVSIFAAH-IGDLTPPQFAALAKLRDVGETSQNQLGTLIAMDAATVKGVIDRL 89

Query: 61  KSRGLIKSSKDPLDPRRRQIELTDKGRRTADAAIETIGEISGETFAPLTREEFRTLTEIL 120
           K+RGL++ SK  +D RR  + LT +GR   +  I    EI+ ET APL+ +E  T  ++L
Sbjct: 90  KARGLVELSKHEVDKRRLLVNLTAEGRDAIERLIPLAREITRETLAPLSAKEIATFMKLL 149

Query: 121 KKI 123
            K+
Sbjct: 150 AKL 152


>ref|YP_004609185.1| MarR family transcriptional regulator [Mesorhizobium opportunistum
           WSM2075]
 gb|AEH85091.1| transcriptional regulator, MarR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 153

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/123 (49%), Positives = 81/123 (65%), Gaps = 1/123 (0%)

Query: 1   LRVALRTHTSIFVAKMIEELTPPQFSTLAKLREVGSCSQNHLGRLIHYDSATITGVINRL 60
           LR A + H SIF A  I +LTPPQF+ LAKLR+VG  SQN LG LI  D+AT+ GV++RL
Sbjct: 31  LRKAHQRHVSIFAAH-IGDLTPPQFAALAKLRDVGETSQNQLGTLIAMDAATVKGVVDRL 89

Query: 61  KSRGLIKSSKDPLDPRRRQIELTDKGRRTADAAIETIGEISGETFAPLTREEFRTLTEIL 120
           K+RGL++ SK  +D RR  + LT +GR   +  I    EI+ ET APL+ +E  T   +L
Sbjct: 90  KARGLVELSKHEVDKRRLLVNLTAEGREAIERLIPLAREITAETLAPLSAKEAATFMRLL 149

Query: 121 KKI 123
            K+
Sbjct: 150 VKL 152


>ref|ZP_05050446.1| transcriptional regulator, MarR family [Octadecabacter antarcticus
           307]
 gb|EDY76712.1| transcriptional regulator, MarR family [Octadecabacter antarcticus
           307]
          Length = 146

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 82/124 (66%), Gaps = 2/124 (1%)

Query: 1   LRVALRTHTSIFVAKMIEELTPPQFSTLAKLREVGSCSQNHLGRLIHYDSATITGVINRL 60
           LR+A + H++IF    +E LTP QFSTL +L E+G  SQNHLGR+   D AT+ GV++RL
Sbjct: 23  LRLASQRHSTIFQKHALENLTPTQFSTLIRLSEMGEISQNHLGRIAAMDVATVKGVVDRL 82

Query: 61  KSRGLIKSSKDPLDPRRRQIELTDKGRRTADAAIETIG-EISGETFAPLTREEFRTLTEI 119
           K++GL+ S  D +D RR  I LT+KG       +E IG +I+ ET +PLT  E R L  +
Sbjct: 83  KTKGLVDSRPDQIDKRRAVITLTEKGSALV-RDLEVIGKDITQETLSPLTANEQRNLVNL 141

Query: 120 LKKI 123
           L+KI
Sbjct: 142 LRKI 145


>ref|YP_004139808.1| MarR family transcription regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gb|ADV09758.1| regulatory protein MarR [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 153

 Score =  110 bits (274), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 60/123 (48%), Positives = 81/123 (65%), Gaps = 1/123 (0%)

Query: 1   LRVALRTHTSIFVAKMIEELTPPQFSTLAKLREVGSCSQNHLGRLIHYDSATITGVINRL 60
           LR A + H +IF A  I +LTPPQF+ LAKLR+VG  SQN LG LI  D+AT+ GVI+RL
Sbjct: 31  LRKAHQRHVAIFAAH-IGDLTPPQFAALAKLRDVGETSQNQLGTLIAMDAATVKGVIDRL 89

Query: 61  KSRGLIKSSKDPLDPRRRQIELTDKGRRTADAAIETIGEISGETFAPLTREEFRTLTEIL 120
           K+RGL++ S+  +D RR  + LT  GR   +  I    EI+ ET APL+ +E  T  ++L
Sbjct: 90  KARGLVELSRHEVDKRRLLVNLTAAGRDAIERLIPLAREITKETLAPLSAKEIATFMKLL 149

Query: 121 KKI 123
            K+
Sbjct: 150 VKL 152