BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0246.0031.p (272 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_836889.1| AraC family transcriptional regulator [Burkhold... 334 7e-90 ref|YP_778385.1| AraC family transcriptional regulator [Burkhold... 333 1e-89 ref|YP_624761.1| AraC family transcriptional regulator [Burkhold... 332 5e-89 ref|YP_159139.1| putative transcriptional regulator [Aromatoleum... 311 6e-83 ref|YP_001352738.1| AraC family transcriptional regulator [Janth... 284 1e-74 >ref|YP_836889.1| AraC family transcriptional regulator [Burkholderia cenocepacia HI2424] ref|YP_001117828.1| AraC family transcriptional regulator [Burkholderia vietnamiensis G4] gb|ABK09996.1| transcriptional regulator, AraC family [Burkholderia cenocepacia HI2424] gb|ABO58363.1| transcriptional regulator, AraC family [Burkholderia vietnamiensis G4] Length = 273 Score = 334 bits (857), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 156/263 (59%), Positives = 197/263 (74%) Query: 6 LRINYDPIDPDQFDRPITSFCIETGEDNDELPLHSHKKGQLVVASHGSVMCRAPGGLWIV 65 ++INY P DPD D P+ S +ET DELP+H H+KGQLVVA GSVMCR+P G WIV Sbjct: 11 VKINYQPFDPDSVDLPVISVLLETSGKEDELPMHVHRKGQLVVALSGSVMCRSPSGWWIV 70 Query: 66 PPQGAVWIPAGVMHSNCVSNNGKVYVVFIDPQASTLPSTCCTFTISSLVRELIHRLSVFP 125 PP GAVWIP G+ HSN S+ K+YV+FI P + LP+ C +FTI+ L+RELI L+ FP Sbjct: 71 PPNGAVWIPGGIPHSNHASDFAKLYVIFIPPDEAGLPTDCRSFTITPLIRELIRSLARFP 130 Query: 126 PLYPVDGPTSRLGRVLLDELVQMSTEQMYLPISTDSRLQHLAASLLNDPGDRSTIDELAT 185 P YP DGP RL RVLLD+L ++ + ++LPIS + RLQ +A++LL++P DRSTI E Sbjct: 131 PDYPKDGPVGRLARVLLDQLALLAPDDVFLPISDNPRLQQIASALLDNPADRSTIAEWGR 190 Query: 186 RYAMSVRTFARLVLKETGMTFGRWRQRLHILVALQRLSAGSSVQAVSLDLGYETPSAFIT 245 RYAMS RT ARLV ETGMTFGRWR+RLHI++ALQRLSAG+SV AV+L+LGYE P++FIT Sbjct: 191 RYAMSERTLARLVRSETGMTFGRWRERLHIIIALQRLSAGASVHAVALELGYEGPNSFIT 250 Query: 246 MFKKAMGKSPRRFLAERSSFVGR 268 MFKK MG+SP +F ++ R Sbjct: 251 MFKKTMGQSPGKFRVDQKEASSR 273 >ref|YP_778385.1| AraC family transcriptional regulator [Burkholderia ambifaria AMMD] gb|ABI92051.1| transcriptional regulator, AraC family [Burkholderia ambifaria AMMD] Length = 273 Score = 333 bits (855), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 155/263 (58%), Positives = 196/263 (74%) Query: 6 LRINYDPIDPDQFDRPITSFCIETGEDNDELPLHSHKKGQLVVASHGSVMCRAPGGLWIV 65 ++INY P DPD D P+ S +ET DELP+H H+KGQ+VVA GSVMCR+P G WIV Sbjct: 11 VKINYQPFDPDSVDLPVISVLLETSGKEDELPMHVHRKGQMVVALSGSVMCRSPSGWWIV 70 Query: 66 PPQGAVWIPAGVMHSNCVSNNGKVYVVFIDPQASTLPSTCCTFTISSLVRELIHRLSVFP 125 PP GAVWIP G+ HSN S+ K+YV+FI P + LP+ C +FTI+ L+RELI L+ FP Sbjct: 71 PPNGAVWIPGGIPHSNHASDFAKLYVIFIPPDEAGLPTDCRSFTITPLIRELIRSLARFP 130 Query: 126 PLYPVDGPTSRLGRVLLDELVQMSTEQMYLPISTDSRLQHLAASLLNDPGDRSTIDELAT 185 P YP DGP RL RVLLD+L ++ + ++LPIS + RLQ +A++LL++P DRSTI E Sbjct: 131 PDYPKDGPVGRLARVLLDQLALLAPDDVFLPISDNPRLQQIASALLDNPADRSTIAEWGR 190 Query: 186 RYAMSVRTFARLVLKETGMTFGRWRQRLHILVALQRLSAGSSVQAVSLDLGYETPSAFIT 245 RYAMS RT ARLV ETGMTFGRWR+RLHI++ALQRLSAG+SV AV+L+LGYE P++FIT Sbjct: 191 RYAMSERTLARLVRSETGMTFGRWRERLHIIIALQRLSAGASVHAVALELGYEGPNSFIT 250 Query: 246 MFKKAMGKSPRRFLAERSSFVGR 268 MFKK MG+SP +F + R Sbjct: 251 MFKKTMGQSPGKFRVDNKEASSR 273 >ref|YP_624761.1| AraC family transcriptional regulator [Burkholderia cenocepacia AU 1054] gb|ABF79788.1| transcriptional regulator, AraC family [Burkholderia cenocepacia AU 1054] Length = 273 Score = 332 bits (850), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 155/263 (58%), Positives = 196/263 (74%) Query: 6 LRINYDPIDPDQFDRPITSFCIETGEDNDELPLHSHKKGQLVVASHGSVMCRAPGGLWIV 65 ++INY P DPD D P+ S +ET DELP+H H+KGQLVVA GSVMCR+P G WIV Sbjct: 11 VKINYQPFDPDSVDLPVISVLLETSGKEDELPMHVHRKGQLVVALSGSVMCRSPSGWWIV 70 Query: 66 PPQGAVWIPAGVMHSNCVSNNGKVYVVFIDPQASTLPSTCCTFTISSLVRELIHRLSVFP 125 PP GAVWIP G+ HSN S+ K+YV+FI P + LP+ C +FTI+ L+RELI L+ FP Sbjct: 71 PPNGAVWIPGGIPHSNHASDFAKLYVIFIPPDEAGLPTDCRSFTITPLIRELIRSLARFP 130 Query: 126 PLYPVDGPTSRLGRVLLDELVQMSTEQMYLPISTDSRLQHLAASLLNDPGDRSTIDELAT 185 P YP DGP RL RVL D+L ++ + ++LPIS + RLQ +A++LL++P DRSTI E Sbjct: 131 PDYPKDGPVGRLARVLPDQLALLAPDDVFLPISDNPRLQQIASALLDNPADRSTIAEWGR 190 Query: 186 RYAMSVRTFARLVLKETGMTFGRWRQRLHILVALQRLSAGSSVQAVSLDLGYETPSAFIT 245 RYAMS RT ARLV ETGMTFGRWR+RLHI++ALQRLSAG+SV AV+L+LGYE P++FIT Sbjct: 191 RYAMSERTLARLVRSETGMTFGRWRERLHIIIALQRLSAGASVHAVALELGYEGPNSFIT 250 Query: 246 MFKKAMGKSPRRFLAERSSFVGR 268 MFKK MG+SP +F ++ R Sbjct: 251 MFKKTMGQSPGKFRVDQKEASSR 273 >ref|YP_159139.1| putative transcriptional regulator [Aromatoleum aromaticum EbN1] emb|CAI08238.1| putative transcriptional regulator [Aromatoleum aromaticum EbN1] Length = 275 Score = 311 bits (797), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 143/249 (57%), Positives = 188/249 (75%) Query: 14 DPDQFDRPITSFCIETGEDNDELPLHSHKKGQLVVASHGSVMCRAPGGLWIVPPQGAVWI 73 DPD P + ++ +++ ELP+H H+KGQLV+A+ GSV C P GLWIVPP GAVWI Sbjct: 12 DPDDLYSPAVALTVDIRDNSRELPVHQHRKGQLVLAARGSVTCEVPSGLWIVPPHGAVWI 71 Query: 74 PAGVMHSNCVSNNGKVYVVFIDPQASTLPSTCCTFTISSLVRELIHRLSVFPPLYPVDGP 133 P G+ H+N VS NG++ ++FI+P A+ LP++CCT ++S L+RELI RL P Y +DGP Sbjct: 72 PGGMAHTNRVSLNGRICLLFIEPDAAVLPASCCTLSVSPLLRELILRLVELPQSYSIDGP 131 Query: 134 TSRLGRVLLDELVQMSTEQMYLPISTDSRLQHLAASLLNDPGDRSTIDELATRYAMSVRT 193 T RL VLLDELVQM EQ++LPI+ + RL+ +A +L+NDP DRST+ E A R ++ RT Sbjct: 132 TGRLVAVLLDELVQMPAEQLHLPITAEPRLRRIADALMNDPADRSTMAEWARRVSIGERT 191 Query: 194 FARLVLKETGMTFGRWRQRLHILVALQRLSAGSSVQAVSLDLGYETPSAFITMFKKAMGK 253 ARL++ ETGMTFGRWRQ+LHI++ALQRLS G +VQ V+ DLGYE+ SAFITMFKK +GK Sbjct: 192 LARLIVGETGMTFGRWRQQLHIVIALQRLSTGMTVQRVAQDLGYESVSAFITMFKKVLGK 251 Query: 254 SPRRFLAER 262 P R+L ER Sbjct: 252 PPARYLVER 260 >ref|YP_001352738.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR89134.1| transcriptional regulator, AraC family [Janthinobacterium sp. Marseille] Length = 259 Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 134/255 (52%), Positives = 184/255 (72%), Gaps = 3/255 (1%) Query: 8 INYDPIDPDQFDRPITSFCIETGEDNDELPLHSHKKGQLVVASHGSVMCRAPGGLWIVPP 67 I+Y+ D+ +P + I+T E P+H H+KGQLVVA HG V C PGGLW+VPP Sbjct: 8 IDYNA---DRLFQPAVALRIDTEGSESESPIHMHRKGQLVVALHGGVTCEVPGGLWMVPP 64 Query: 68 QGAVWIPAGVMHSNCVSNNGKVYVVFIDPQASTLPSTCCTFTISSLVRELIHRLSVFPPL 127 Q VWIP G+ HSN + N ++ +F++P A++LP C T ++ L+RE+I L+ P Sbjct: 65 QCGVWIPGGMPHSNRATANARLCFLFVEPGAASLPGECATLALTPLIREMILHLADLPQH 124 Query: 128 YPVDGPTSRLGRVLLDELVQMSTEQMYLPISTDSRLQHLAASLLNDPGDRSTIDELATRY 187 YP DG T++L VLL ELV M TEQ++LP+S +RL+ +A++L P DRST+ E R+ Sbjct: 125 YPPDGHTAKLVEVLLSELVMMPTEQLHLPVSDHARLRQIASALTQHPDDRSTVAEWGERF 184 Query: 188 AMSVRTFARLVLKETGMTFGRWRQRLHILVALQRLSAGSSVQAVSLDLGYETPSAFITMF 247 AMS RT ARLVL ETGMTFGRWR++LH+++ALQRL++G+SVQ VS DLGY++ SAFITMF Sbjct: 185 AMSERTLARLVLNETGMTFGRWRRQLHLIIALQRLASGASVQRVSEDLGYDSVSAFITMF 244 Query: 248 KKAMGKSPRRFLAER 262 KKA+GKSP R+ +++ Sbjct: 245 KKALGKSPARYFSDK 259